prot_Ecto-sp13_S_contig1856.5803.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1856.5803.1
Unique Nameprot_Ecto-sp13_S_contig1856.5803.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length407
Homology
BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Match: A0A6H5L1F7_9PHAE (MMR_HSR1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F7_9PHAE)

HSP 1 Score: 746 bits (1925), Expect = 6.880e-271
Identity = 385/406 (94.83%), Postives = 396/406 (97.54%), Query Frame = 0
Query:    1 MVDSTLGVRVALIGRNSACKSLFLKAASSSDKLLADTASDAEVWWTSPLAPREADLAHTPEHGFAPSGERLLPAQLNHASAASVLGEESKQSNGDRCEQAVADAARQGAGEATPAVLMVVGAEMAFHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQSTAMKAFLESMNDEMALEGVPIVAVSPRTELWLREQESEGGRVSYRRGDSQFRIRPAFESLMDKKEITNARAAFDVCGGTGILAAVSTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAEPLPIDLDAPIGNGAWLVRLAGSRKAAKMWNAGPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 406
            MVDSTLGVRVALIGRNS CKSLFLKAASSSDKLL DTASDAEVWWTSPLAPREADLAH PEHGFAPSGERLLPAQLNHAS ASVLGEESK+S+GDRCEQAVADAARQGA EATPAVLMVVGAE++FHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQS+AMKAFL+S+ DEMALEGVP+VA+SPRTELWLREQESEGGRVSYRRGDSQFRI PAF+SLMDKKEITNARAAFDVCGGTGILAA STAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRA PLP+DLDAPIGNGAWLVRLAGSRKAAKMWNA PAAATGGKGGKPLASVQFGDLRSKDRRRGKS
Sbjct:    1 MVDSTLGVRVALIGRNSTCKSLFLKAASSSDKLLPDTASDAEVWWTSPLAPREADLAHAPEHGFAPSGERLLPAQLNHASVASVLGEESKKSDGDRCEQAVADAARQGADEATPAVLMVVGAEISFHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQSSAMKAFLQSVKDEMALEGVPVVAISPRTELWLREQESEGGRVSYRRGDSQFRIHPAFQSLMDKKEITNARAAFDVCGGTGILAAASTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAGPLPLDLDAPIGNGAWLVRLAGSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 406          
BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Match: A0A836CLS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.440e-25
Identity = 91/227 (40.09%), Postives = 118/227 (51.98%), Query Frame = 0
Query:  197 IVAVSPRTELWLREQESEGGRVSYRRGDSQF---RIRPAFESLMDKKEITNARAAFDVCGGTGILAAVSTAIGL-DPP-TLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKK--EGILAGELVGAEA-SLAPTNSAGRAEPLP-------------IDLDAPIGNGAWLVRLAGSRKAAKMWNAGPAAATGGKGGKPLASVQFGDLRSKDRR 402
            + AVSP  E WL EQ+ EGGR+S+RRG   F    I+PAF S++   E   A AA   CGG+GI AA+  A+GL  PP TLV PVGD  TLQS GW G GAP A LR C  +   ++A  L  + K      L+GELV A A S++ + +A                    +  +  IG G  +V +  +R+   MW               L SVQFGDLRSK+R+
Sbjct:   82 VFAVSPWLERWLAEQQ-EGGRLSHRRGSDSFVASAIKPAFASVIPAAEAWRAAAACRACGGSGIPAAIVAAVGLCSPPLTLVLPVGDLATLQSLGWEGVGAPRAALRDCLQVWPGTTAAQLCEILKSPPHERLSGELVQATALSVSWSRAAAXXXXXXXXXXXXXXXVVRQLRSNEAIGAGCHVVAIETTRRPVPMWQGEXXXXXXXXXXAKLPSVQFGDLRSKNRK 307          
BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Match: A0A7S3R6V4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R6V4_DUNTE)

HSP 1 Score: 59.7 bits (143), Expect = 7.200e-6
Identity = 54/170 (31.76%), Postives = 77/170 (45.29%), Query Frame = 0
Query:  191 ALEGVPIVAVSPRTELWLREQESEGGRVSYRRGDSQFRIRPAFESLMDKKEITNA-RAAFDVCGGTGILAAVSTAIGLDPPTLVFPVGDF--------LTLQSSGWC---GDGAPV------ATLRTCRLMRRNSSARDLFAVEKKEG--ILAGELVGAEASLAPTNSAG 340
            AL   P VA+S  +E WL     +G +V Y+       + P  +     +++    R      GGTG L AVSTA+ + PP +VFPVGD          T+ + G     G+ A          LR   LM+  S+  DLF+V  +    +L GE V AEA +    S+G
Sbjct:  881 ALPQEPAVAMSAASERWLATTARKG-QVVYQDAAPSASVAPGCDDASVARQVAELNRRVLGPFGGTGALLAVSTAVAMRPPAVVFPVGDLNTCTALPARTIATGGGLLLGGEDAKARAAEGPTVLRDAVLMKPGSTPADLFSVLVRPPWQLLEGEFVRAEARVLQCGSSG 1049          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1F7_9PHAE6.880e-27194.83MMR_HSR1_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CLS2_9STRA2.440e-2540.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3R6V4_DUNTE7.200e-631.76Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013646Uncharacterised GTP-binding protein, C-terminalPFAMPF08438MMR_HSR1_Ccoord: 180..278
e-value: 1.2E-8
score: 35.5
NoneNo IPR availablePANTHERPTHR23305:SF1coord: 194..333
NoneNo IPR availablePANTHERPTHR23305GTP-BINDING PROTEIN-RELATEDcoord: 194..333

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1856contigEcto-sp13_S_contig1856:4321..5952 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1856.5803.1mRNA_Ecto-sp13_S_contig1856.5803.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1856 4321..5952 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1856.5803.1 ID=prot_Ecto-sp13_S_contig1856.5803.1|Name=mRNA_Ecto-sp13_S_contig1856.5803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MVDSTLGVRVALIGRNSACKSLFLKAASSSDKLLADTASDAEVWWTSPLA
PREADLAHTPEHGFAPSGERLLPAQLNHASAASVLGEESKQSNGDRCEQA
VADAARQGAGEATPAVLMVVGAEMAFHKGYPRPNRGGVTPVKAAVSRVRE
RLGGGQVPLAVAVSFDVEWDGGPSQSTAMKAFLESMNDEMALEGVPIVAV
SPRTELWLREQESEGGRVSYRRGDSQFRIRPAFESLMDKKEITNARAAFD
VCGGTGILAAVSTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTC
RLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAEPLPIDLD
APIGNGAWLVRLAGSRKAAKMWNAGPAAATGGKGGKPLASVQFGDLRSKD
RRRGKS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013646MMR_HSR1_C