mRNA_Ecto-sp13_S_contig18524.5786.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18524.5786.1
Unique NamemRNA_Ecto-sp13_S_contig18524.5786.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18524.5786.1 vs. uniprot
Match: D7FWD5_ECTSI (PX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD5_ECTSI)

HSP 1 Score: 295 bits (755), Expect = 4.860e-92
Identity = 196/206 (95.15%), Postives = 198/206 (96.12%), Query Frame = 1 
Query:    1 GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQRLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSSGSAXXXXXXXXXXXXXXXXXXXXXRLLRPIPDFXXXXXXXXXXXXXXXXXGAVPTLIAEAAAEACSAGVETTGASKHARGMSGKGGRTADVPGSRGGQRGGAGALE 618
            GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQRLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSS   XXXXXXXXXXXXXXXXXXXXXRLLRPIPDFXXXXXXXXXXXXXXXXX AVPT+IAEAAAEAC AGV TTGA+KH RGMSGKGGRTADVPGSRGGQRGGAGA E
Sbjct:    7 GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQRLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSSAXXXXXXXXXXXXXXXXXXXXXXXRLLRPIPDFXXXXXXXXXXXXXXXXXAAVPTMIAEAAAEACPAGVGTTGANKHPRGMSGKGGRTADVPGSRGGQRGGAGASE 212
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BLAST of mRNA_Ecto-sp13_S_contig18524.5786.1 vs. uniprot
Match: A0A6H5KCW0_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW0_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 5.220e-84
Identity = 184/200 (92.00%), Postives = 185/200 (92.50%), Query Frame = 1 
Query:    1 GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQRLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSSGSAXXXXXXXXXXXXXXXXXXXXX-RLLRPIPDFXXXXXXXXXXXXXXXXXGA-VPTLIAEAAAEACSAGVETTGASKHARGMSGKGGRTADVPGSRGGQ 594
            GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQRLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSS SA   XXXXXXXXXXXXXXXXX  RLLRPIPDF    XXXXXXXXXXXXX   VPT+IAEAAAEAC AGVETTGASKHARGMSGK GRTADVPGSRGGQ
Sbjct:   22 GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQRLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSSASAPLPXXXXXXXXXXXXXXXXXAGRLLRPIPDFFLDGXXXXXXXXXXXXXXXXVPTMIAEAAAEACPAGVETTGASKHARGMSGKAGRTADVPGSRGGQ 221
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18524.5786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWD5_ECTSI4.860e-9295.15PX domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KCW0_9PHAE5.220e-8492.00PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18524contigEcto-sp13_S_contig18524:151..1951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score297.0
Seed ortholog evalue6.9e-78
Seed eggNOG ortholog2880.D7FWD5
Model size621
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.phosphatidylinositol binding
EggNOG OGsCOG5391@1,KOG2527@2759
Cds size618
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.327824-CDS-Ecto-sp13_S_contig18524:150..3291681462951.327824-CDS-Ecto-sp13_S_contig18524:150..329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18524 151..329 +
1681462951.3421977-CDS-Ecto-sp13_S_contig18524:1511..19501681462951.3421977-CDS-Ecto-sp13_S_contig18524:1511..1950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18524 1512..1950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18524.5786.1prot_Ecto-sp13_S_contig18524.5786.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18524 151..1950 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18524.5786.1

>prot_Ecto-sp13_S_contig18524.5786.1 ID=prot_Ecto-sp13_S_contig18524.5786.1|Name=mRNA_Ecto-sp13_S_contig18524.5786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
GRSLYFTPRETVIFGYLFDLADTDDDGLVGGNDGGHALLGRSRLPQSTLQ
RLWAEAGGESPDECLARPQWFVLVALVALAQAGRPCTLRDLLNTCDVVSS
GSAPPPPLQAFQQQSSSSGSSNAGRLLRPIPDFFLDGGTPPPPPVAAAAA
GAVPTLIAEAAAEACSAGVETTGASKHARGMSGKGGRTADVPGSRGGQRG
GAGALE
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mRNA from alignment at Ecto-sp13_S_contig18524:151..1951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18524.5786.1 ID=mRNA_Ecto-sp13_S_contig18524.5786.1|Name=mRNA_Ecto-sp13_S_contig18524.5786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18524:151..1951+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGAAGCCTGTACTTCACCCCTCGCGAGACGGTAATCTTCGGGTACCT
CTTTGACCTAGCGGACACGGACGATGACGGTCTCGTCGGCGGGAACGATG
GAGGCCATGCTCTCCTCGGCCGCTCGCGCTTGCCGCAGTCCACCCTGCAG
CGCCTGTGGGCGGAGGCCGGGGGGGAAAGGTGTGTGGCTCAATTGTGTTT
TGTTTTCGTTTCCTGAGTCAGTTGTGCTGGGACTGATTGGATTTCTTGTT
TGCTGCTGTTGGTTGGTGCTGCTGTCGCTTGTTATCGTTATTGATGCATG
TCGTGTTGTCGTCGCTGCTGTTGTTCATCATTCGGTTGTCGTTGTTGTTT
GTGGTGGTGGGTGGTGGTGCTGCTGCTGCTGCTGCTTCATTTCTGCAGCT
GGCCGACAAACTGGAGTTTTAAAATGTTTCGTGTTTCACCCGCCCCCAAC
CACTTGCATTGCTGTTGTAGAAATGAGCCCTCTTATTGACACCTGTCTCG
CTGCTTGCGCTGGTGTAGACCTCAGCGTTGCTTTCGTCGGCGTCTGTGTT
TTGACCGAACCTGCTTCTCCGAATCGTTATCAGTCAAATTGGGATTTTCC
CAGGCATCCTTCCGTCGTTTCGTGTGTGCGTGTTTTTTTTTTTTCATGAA
AAGCCACGAGTGTTTCGGGGGGGGAAGCGTGTTTTCGACGGATGTATGCA
TTCTATGTCGTTGTGTGCGGAGGCTCGATCCAAATATTTGTGGACGCTAA
AACAATTTTACGTCGACAAAAGCTTTTCACGAATGGTGCAACGTACATGG
CGACAGCAGATTCTCTCAACTCAAGCGCCTCTTGGCCGTGGCGGAACGGT
CGCGTTTTTTTCTTCGTTCTTCGGCCTGGCCGCTGAGATCGTATACTGGT
GAAAGACTCCGCTGGCGTTCAAAACCTCCTTCTCCCACATGACGAAAACA
GTCCCGTCTGCGTCAACGACGGACGAGGATGATTCCGATTTGGCTTGGTG
TCGAGCCTTGTACCTTATTATGTTCGCTTTCTTGCTGTCCCCGGTAGATA
CGTGTCGGTAGTGCTCCAAGCCGGTTTTCCCGAAGTTATGTTTGGGATGA
ATTCAAGCGGCAGGGTGTTCCCTCCAAGTAACTCTTTCGCGGCCAAACGA
GCATGTCCCCTCCTCTCGCCCACTACCCAGCAACTATACTCCCCCGCCCC
CCGCCGCCCTCAATGCCCCAATGCTCCGTCCTCTCGAAGACGCCTGGTCG
ATGATCTGAGTAACCGCTAAGGCATGCAAAACATGGGAGTACGACCCCGC
CGCCACCCCCTCCCCACGATCGCTGCCTGTTTCGGTCTTGCCGTGTCTTG
TGCCCGAGCAGCCCGGACGAGTGCCTGGCGCGTCCGCAGTGGTTCGTGCT
TGTTGCTCTCGTGGCGCTAGCGCAGGCCGGACGGCCCTGCACCCTGCGCG
ACCTGCTAAACACCTGCGACGTGGTGTCGTCCGGGAGCGCGCCGCCACCG
CCTCTGCAGGCGTTCCAGCAGCAGAGCAGCAGCAGCGGCAGCAGCAACGC
GGGGCGACTGCTGCGGCCGATCCCTGACTTCTTCCTGGACGGGGGTACCC
CGCCCCCCCCGCCGGTGGCGGCGGCGGCGGCGGGAGCCGTGCCGACGTTG
ATTGCGGAGGCGGCGGCGGAGGCGTGCTCGGCTGGAGTAGAAACAACAGG
GGCGAGCAAGCACGCCAGAGGGATGTCGGGGAAGGGGGGACGAACGGCCG
ATGTCCCCGGCTCGCGTGGTGGACAACGAGGGGGGGCCGGCGCCTTGGAA
C
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18524:151..1951+

>mRNA_Ecto-sp13_S_contig18524.5786.1 ID=mRNA_Ecto-sp13_S_contig18524.5786.1|Name=mRNA_Ecto-sp13_S_contig18524.5786.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18524:151..1951+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCGAAGCCTGTACTTCACCCCTCGCGAGACGGTAATCTTCGGGTACCT
CTTTGACCTAGCGGACACGGACGATGACGGTCTCGTCGGCGGGAACGATG
GAGGCCATGCTCTCCTCGGCCGCTCGCGCTTGCCGCAGTCCACCCTGCAG
CGCCTGTGGGCGGAGGCCGGGGGGGAAAGCCCGGACGAGTGCCTGGCGCG
TCCGCAGTGGTTCGTGCTTGTTGCTCTCGTGGCGCTAGCGCAGGCCGGAC
GGCCCTGCACCCTGCGCGACCTGCTAAACACCTGCGACGTGGTGTCGTCC
GGGAGCGCGCCGCCACCGCCTCTGCAGGCGTTCCAGCAGCAGAGCAGCAG
CAGCGGCAGCAGCAACGCGGGGCGACTGCTGCGGCCGATCCCTGACTTCT
TCCTGGACGGGGGTACCCCGCCCCCCCCGCCGGTGGCGGCGGCGGCGGCG
GGAGCCGTGCCGACGTTGATTGCGGAGGCGGCGGCGGAGGCGTGCTCGGC
TGGAGTAGAAACAACAGGGGCGAGCAAGCACGCCAGAGGGATGTCGGGGA
AGGGGGGACGAACGGCCGATGTCCCCGGCTCGCGTGGTGGACAACGAGGG
GGGGCCGGCGCCTTGGAA
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