mRNA_Ecto-sp13_S_contig18523.5785.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18523.5785.1
Unique NamemRNA_Ecto-sp13_S_contig18523.5785.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18523.5785.1 vs. uniprot
Match: D7FKK7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK7_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 5.690e-78
Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 1 
Query:    1 ILETKQPILYQMKKAKEAKPPTSPLMLQLLIPKGMAQVSLTMEITFQLPVVDAGTREFLPLEEEVNKRLSKQIDWAPPGSEPLTRGVRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDDTLVSGVFIEMCGEGTGN 411
            +LETKQPIL QMKKAKEAKPPTSPL+LQLLIPKGMAQ       TFQLPVVDAGTREFLPL+EEVN+RL KQIDW+PPGSEPLTRG+RPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGD+TLVSGVFIEMCGEG  N
Sbjct:    2 VLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQS------TFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLVSGVFIEMCGEGMEN 132
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BLAST of mRNA_Ecto-sp13_S_contig18523.5785.1 vs. uniprot
Match: D7G8I7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I7_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 6.440e-67
Identity = 107/123 (86.99%), Postives = 114/123 (92.68%), Query Frame = 1 
Query:    1 ILETKQPILYQMKKAKEAKPPTSPLMLQLLIPKGMAQVSLTMEITFQLPVVDAGTREFLPLEEEVNKRLSKQIDWAPPGSEPLTRGVRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDDTLV 369
            +LETKQPIL QMKKAKEAKPPTSPL+LQLLIPKGMAQ       TFQLPVVDAGTREFLPL+EEVN+RL KQIDW+PPGSEPLTRG+RPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGD+TLV
Sbjct:    2 VLETKQPILDQMKKAKEAKPPTSPLILQLLIPKGMAQS------TFQLPVVDAGTREFLPLDEEVNRRLLKQIDWSPPGSEPLTRGLRPLKTRLFAMRAKGDGNCLPHAVSLSLWGHGDNTLV 118
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BLAST of mRNA_Ecto-sp13_S_contig18523.5785.1 vs. uniprot
Match: A0A6H5L7A1_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A1_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 2.810e-35
Identity = 76/110 (69.09%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:   34 MKKAKEAKPPTSPLMLQLLIPKGMAQVSLTMEITF-------QLPVVDAGTREFLPLEEEVNKRLSKQIDWAPPGSEPLT-----------RGVRPLKTRLFAMRAKGDG 309
            MKKAK AKPPTSPL+LQLLIPKGMAQ +  +           QLPVVDAGTRE LPLEEEVN+RL KQIDWAPPGSEPLT           RGVRPLK+RLFAMRAKG G
Sbjct:    1 MKKAKGAKPPTSPLILQLLIPKGMAQPASAVGYILSHKVEHLQLPVVDAGTRESLPLEEEVNRRLLKQIDWAPPGSEPLTSPSLRADPRAHRGVRPLKSRLFAMRAKGTG 110
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18523.5785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKK7_ECTSI5.690e-7886.86OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G8I7_ECTSI6.440e-6786.99OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7A1_9PHAE2.810e-3569.09OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18523contigEcto-sp13_S_contig18523:1113..1852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score211.5
Seed ortholog evalue2.5e-52
Seed eggNOG ortholog2880.D7G8I7
Preferred nameZRANB1
Model size411
KEGG koko:K11860,ko:K11862
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
Exons3
EggNOG free text desc.protein deubiquitination involved in ubiquitin-dependent protein catabolic process
EggNOG OGsKOG4345@1,KOG4345@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002370.1
EC3.4.19.12
Cds size411
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.2821014-CDS-Ecto-sp13_S_contig18523:1112..12691681462951.2821014-CDS-Ecto-sp13_S_contig18523:1112..1269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18523 1113..1269 -
1681462951.2929206-CDS-Ecto-sp13_S_contig18523:1402..15251681462951.2929206-CDS-Ecto-sp13_S_contig18523:1402..1525Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18523 1403..1525 -
1681462951.301732-CDS-Ecto-sp13_S_contig18523:1721..18521681462951.301732-CDS-Ecto-sp13_S_contig18523:1721..1852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18523 1722..1852 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18523.5785.1prot_Ecto-sp13_S_contig18523.5785.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18523 1113..1852 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18523.5785.1

>prot_Ecto-sp13_S_contig18523.5785.1 ID=prot_Ecto-sp13_S_contig18523.5785.1|Name=mRNA_Ecto-sp13_S_contig18523.5785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
ILETKQPILYQMKKAKEAKPPTSPLMLQLLIPKGMAQVSLTMEITFQLPV
VDAGTREFLPLEEEVNKRLSKQIDWAPPGSEPLTRGVRPLKTRLFAMRAK
GDGNCLPHAVSLSLWGHGDDTLVSGVFIEMCGEGTGN
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mRNA from alignment at Ecto-sp13_S_contig18523:1113..1852-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18523.5785.1 ID=mRNA_Ecto-sp13_S_contig18523.5785.1|Name=mRNA_Ecto-sp13_S_contig18523.5785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18523:1113..1852- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCGAAACCAAGCAGCCGATACTATACCAGATGAAGAAAGCAAAGGA
GGCGAAACCGCCGACCAGCCCCCTGATGTTACAGCTGCTCATCCCTAAAG
GGATGGCACAGGTGAGTCTGACGATGGAGATGTTATCTCACGTAGCACTT
CTTCAATCTTCGTTAAACACAGAGGTACACGGCCCGTTCCGTCATGACAA
AACCCATCTCAGCCTGCTCCGGCCGTGGGGTATATCCTCAGCCACAAGGT
AGGTTTGCCGCAGATTACGTCCATGCTTTTTTGCGCGCCCCTGTTTCGTT
TTCGGCCACACGTTTGATATCGCAAAGCACCTTCCAGCTGCCTGTGGTGG
ACGCTGGAACCCGCGAGTTCTTGCCGCTGGAAGAGGAGGTCAACAAACGG
CTGTCGAAGCAAATCGACTGGGCGCCGCCCGGCTCTGAGCCTCTAACAAG
GTGCGGGTGTTTTTCCGTGCCCGTGTTCGGCTCGACTTGGTGCTCGCGAG
TCGTGGCACTCGCAAGAGATGAACACCGCTTTGTTTTGTCCCAACCTTGG
CCCCTCGCCCCGGGCCGACCCGCACGCGTACAGAGGGGTCCGCCCTTTGA
AGACAAGACTGTTCGCGATGAGGGCAAAGGGAGACGGGAACTGTCTACCG
CACGCTGTTTCACTGTCGCTGTGGGGCCATGGAGACGACACGCTGGTGAG
CGGTGTGTTCATCGAGATGTGCGGAGAGGGAACGGGGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18523:1113..1852-

>mRNA_Ecto-sp13_S_contig18523.5785.1 ID=mRNA_Ecto-sp13_S_contig18523.5785.1|Name=mRNA_Ecto-sp13_S_contig18523.5785.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18523:1113..1852- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCTCGAAACCAAGCAGCCGATACTATACCAGATGAAGAAAGCAAAGGA
GGCGAAACCGCCGACCAGCCCCCTGATGTTACAGCTGCTCATCCCTAAAG
GGATGGCACAGGTGAGTCTGACGATGGAGATCACCTTCCAGCTGCCTGTG
GTGGACGCTGGAACCCGCGAGTTCTTGCCGCTGGAAGAGGAGGTCAACAA
ACGGCTGTCGAAGCAAATCGACTGGGCGCCGCCCGGCTCTGAGCCTCTAA
CAAGAGGGGTCCGCCCTTTGAAGACAAGACTGTTCGCGATGAGGGCAAAG
GGAGACGGGAACTGTCTACCGCACGCTGTTTCACTGTCGCTGTGGGGCCA
TGGAGACGACACGCTGGTGAGCGGTGTGTTCATCGAGATGTGCGGAGAGG
GAACGGGGAAC
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