prot_Ecto-sp13_S_contig18510.5778.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18510.5778.1
Unique Nameprot_Ecto-sp13_S_contig18510.5778.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length128
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18510.5778.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.020e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 0 
Query:   17 ELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKRDSSNAGLVVLAPPLAGRSGVSGVGG 128
            ELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEK+D SNAGLVVLAPPLAGRSGVSGVGG
Sbjct:  554 ELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDISNAGLVVLAPPLAGRSGVSGVGG 665
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BLAST of mRNA_Ecto-sp13_S_contig18510.5778.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 2.260e-69
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 
Query:   18 LPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKRDSSNAGLVVLAPPLAGRSGVSGVGG 128
            LPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEK+DSSNAGLVVLA PL+GRSGVSGVGG
Sbjct:  431 LPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDSSNAGLVVLASPLSGRSGVSGVGG 541
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18510.5778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC98_9PHAE1.020e-7098.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPU7_ECTSI2.260e-6997.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 21..86
e-value: 4.2E-5
score: 33.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 16..100
e-value: 1.9E-7
score: 33.1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 16..128
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..15

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18510contigEcto-sp13_S_contig18510:614..997 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18510.5778.1mRNA_Ecto-sp13_S_contig18510.5778.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18510 614..998 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18510.5778.1 ID=prot_Ecto-sp13_S_contig18510.5778.1|Name=mRNA_Ecto-sp13_S_contig18510.5778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
GAEAAAAVAAAAAAAAELPPPCFICKDDITHWGPNAGNGEAISCARDGCG
RVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLG
EKRDSSNAGLVVLAPPLAGRSGVSGVGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD