mRNA_Ecto-sp13_S_contig18494.5771.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18494.5771.1
Unique NamemRNA_Ecto-sp13_S_contig18494.5771.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: D7FY84_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY84_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 3.060e-30
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MIAHALGKVENGKGAFTQIC+IIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR
Sbjct:  439 MIAHALGKVENGKGAFTQICNIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 496
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: T0R4L9_SAPDV (Fork-head domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R4L9_SAPDV)

HSP 1 Score: 84.7 bits (208), Expect = 2.430e-20
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  +  G+G F  IC+ IE Q+   LNWKLESD RK+PVWKSSVRKILFSNSR
Sbjct:    1 MISHALRSMPRGEGTFKDICEYIEAQYESQLNWKLESDQRKSPVWKSSVRKILFSNSR 58
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: A0A067BXK9_SAPPC (PHD domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BXK9_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 2.960e-19
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  +  G+G F  IC+ IE Q+   LNWKLESD RK+PVWKSSVRKILFSNSR
Sbjct:   98 MISHALRSMPRGEGTFKDICEYIEAQYESQLNWKLESDQRKSPVWKSSVRKILFSNSR 155
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: K3XC02_GLOUD (PHD-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XC02_GLOUD)

HSP 1 Score: 87.8 bits (216), Expect = 4.680e-19
Identity = 39/58 (67.24%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  +  GKG F +ICD +E+Q+   LNWKLESD RK+PVWKSSVRKILFSN R
Sbjct:  323 MISHALAVLPQGKGTFKEICDFVEKQYESQLNWKLESDQRKSPVWKSSVRKILFSNMR 380
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: A0A5D6XIM9_9STRA (PHD-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XIM9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 5.520e-19
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  +  GKG+F +ICD +E+Q+   LNWKLESD RK+PVWKSSVRKILFSN R
Sbjct:  301 MISHALTVLPQGKGSFKEICDFVEKQYESQLNWKLESDQRKSPVWKSSVRKILFSNMR 358
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: A0A8K1CP40_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP40_PYTOL)

HSP 1 Score: 87.0 bits (214), Expect = 6.900e-19
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  + +GKG F +ICD +E+Q+   LNWKLESD RK+PVWKSSVRKILFSN R
Sbjct:  287 MISHALTVLPDGKGTFKEICDFVEKQYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 344
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: A0A3R7JYC0_9STRA (PHD-type domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JYC0_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.730e-18
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  + +GKG+F +ICD +E ++   LNWKLESD RK+PVWKSSVRKILFSN R
Sbjct:  246 MISHALAILPDGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 303
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: A0A067C5A6_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C5A6_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 1.790e-18
Identity = 39/58 (67.24%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  +  G+G F  IC+ IE Q+   LNWKLESD RK+PVWKSSVRKILFSNSR
Sbjct:  193 MISHALRSMPRGEGTFKDICEYIEAQYESQLNWKLESDQRKSPVWKSSVRKILFSNSR 250
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BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: H3GPF2_PHYRM (PHD-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPF2_PHYRM)

HSP 1 Score: 85.1 bits (209), Expect = 3.400e-18
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  + +GKG+F +ICD +E ++   LNWKLESD RK+PVWKSSVRKILFSN R
Sbjct:  282 MISHALTDLPDGKGSFKEICDFVETKYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 339
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Match: A0A329SI52_9STRA (PHD-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SI52_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.650e-18
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVRKILFSNSR 174
            MI+HAL  + +GKG+F +ICD +E ++   LNWKLESD RK+PVWKSSVRKILFSN R
Sbjct:  291 MISHALTVLPSGKGSFKEICDFVETEYESQLNWKLESDQRKSPVWKSSVRKILFSNVR 348
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18494.5771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY84_ECTSI3.060e-3098.28SGF29 C-terminal domain-containing protein n=2 Tax... [more]
T0R4L9_SAPDV2.430e-2067.24Fork-head domain-containing protein n=1 Tax=Saprol... [more]
A0A067BXK9_SAPPC2.960e-1967.24PHD domain-containing protein n=1 Tax=Saprolegnia ... [more]
K3XC02_GLOUD4.680e-1967.24PHD-type domain-containing protein n=1 Tax=Globisp... [more]
A0A5D6XIM9_9STRA5.520e-1967.24PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8K1CP40_PYTOL6.900e-1967.24Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7JYC0_9STRA1.730e-1865.52PHD-type domain-containing protein n=4 Tax=Phytoph... [more]
A0A067C5A6_SAPPC1.790e-1867.24Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
H3GPF2_PHYRM3.400e-1865.52PHD-type domain-containing protein n=1 Tax=Phytoph... [more]
A0A329SI52_9STRA3.650e-1865.52PHD-type domain-containing protein n=2 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18494contigEcto-sp13_S_contig18494:1739..2191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score119.4
Seed ortholog evalue5.6e-25
Seed eggNOG ortholog2880.D7FY84
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG OGs2CZEN@1,2SA0N@2759
Cds size174
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.8845968-CDS-Ecto-sp13_S_contig18494:1738..18481681462949.8845968-CDS-Ecto-sp13_S_contig18494:1738..1848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18494 1739..1848 +
1681462949.8946645-CDS-Ecto-sp13_S_contig18494:2127..21911681462949.8946645-CDS-Ecto-sp13_S_contig18494:2127..2191Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18494 2128..2191 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18494.5771.1prot_Ecto-sp13_S_contig18494.5771.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18494 1739..2191 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18494.5771.1

>prot_Ecto-sp13_S_contig18494.5771.1 ID=prot_Ecto-sp13_S_contig18494.5771.1|Name=mRNA_Ecto-sp13_S_contig18494.5771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
MIAHALGKVENGKGAFTQICDIIERQFSEYLNWKLESDVRKTPVWKSSVR
KILFSNSR
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mRNA from alignment at Ecto-sp13_S_contig18494:1739..2191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18494.5771.1 ID=mRNA_Ecto-sp13_S_contig18494.5771.1|Name=mRNA_Ecto-sp13_S_contig18494.5771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18494:1739..2191+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGCCCACGCTCTAGGCAAGGTGGAGAACGGAAAGGGCGCCTTCAC
GCAGATCTGCGATATCATCGAGCGGCAGTTCTCCGAGTATCTAAACTGGA
AGCTCGAGAGGTACGTACGCGATATGACGACGCCAAAACCAACCGCCCAT
GAATATGGAACTCTGCAACATGGAATTCCGCAGGCTTCCAACTAGAATGG
CCTGAACCACCAAATATGGTTTTCTTCTAGATGTATATGTTGCGCCTGGT
TTGTGTTCGTTTTCACTGCCACTCGATGTGTTCCGTTTCGCGAATACTGA
CCTGTGGTTTTCGGTTCACTCTTTTTGCCGTTGTCGTTTCGTGTCGGCTT
TTGGTTTGTGGTTGCGGTTCGCGTTCTACCTGAGCACAGCGATGTCCGTA
AGACCCCGGTGTGGAAGTCATCCGTCCGGAAGATCCTCTTCTCCAATAGC
AGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18494:1739..2191+

>mRNA_Ecto-sp13_S_contig18494.5771.1 ID=mRNA_Ecto-sp13_S_contig18494.5771.1|Name=mRNA_Ecto-sp13_S_contig18494.5771.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18494:1739..2191+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGCCCACGCTCTAGGCAAGGTGGAGAACGGAAAGGGCGCCTTCAC
GCAGATCTGCGATATCATCGAGCGGCAGTTCTCCGAGTATCTAAACTGGA
AGCTCGAGAGCGATGTCCGTAAGACCCCGGTGTGGAAGTCATCCGTCCGG
AAGATCCTCTTCTCCAATAGCAGG
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