prot_Ecto-sp13_S_contig18453.5750.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18453.5750.1
Unique Nameprot_Ecto-sp13_S_contig18453.5750.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length217
Homology
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 1.450e-76
Identity = 188/202 (93.07%), Postives = 189/202 (93.56%), Query Frame = 0
Query:    1 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKV------------AYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLETLVADLKRLVIPGSRAA 190
            RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKV            AYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RDLETLVADLKRLVIPG+RAA
Sbjct: 1022 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVKLQRRSRARGQVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDLETLVADLKRLVIPGNRAA 1223          
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: D8LI68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI68_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.580e-41
Identity = 140/190 (73.68%), Postives = 141/190 (74.21%), Query Frame = 0
Query:    1 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLETLVADLKRLVIPGSRAA 190
            RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVA                                                ALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RDLETLVADLKRLVIPG+RAA
Sbjct: 1332 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVA------------------------------------------------ALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDLETLVADLKRLVIPGNRAA 1473          
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A835Z5T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.390e-24
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 0
Query:    1 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVS 135
            R+D  +ELAELR+  + LE+RSDDD LIG+LQR+L A + A+R+ ARKHE T+ANLRRK A LR+LE  L+ RE AL  L ERS+ +VAALKGAL+  AD      AG+T  +     ++ L + R R+ A RV+
Sbjct:  589 RQDEAEELAELRRHAAALEARSDDDLLIGRLQRRLLALRGAHRALARKHEATRANLRRKAAALRLLEGHLEAREGALGALAERSRAQVAALKGALVQLAD------AGVTSDE----LQQQLNLARGRDFAERVA 713          
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A7S2WLQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLQ0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.910e-8
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0
Query:   33 RKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDF 98
            R+LT T+ +YR+FARK+++     RRK AL R LE RLD+R+ ALH + E  + +V ALK AL + 
Sbjct:    1 RQLTTTRTSYRAFARKYDVALVRARRKEALARKLEERLDERDKALHAVSEEKRLQVGALKAALSEL 66          
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A7S1XKY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKY7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.800e-6
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 0
Query:    7 ELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADG 101
            EL +LR+ + D+E +SDD+ +IG+LQR++   +   +   ++H   +A +R++ A+ RVL++RL+ REDA     + +      L+ A+   ADG
Sbjct:  144 ELEQLRQALMDMEQQSDDNVIIGKLQRQIFGFRAKMQELEQEHGSLRAQMRKREAMARVLDARLEVREDAFAKYRDEATRAREELEAAVRTLADG 238          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTB3_9PHAE1.450e-7693.07Reverse transcriptase domain-containing protein n=... [more]
D8LI68_ECTSI1.580e-4173.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z5T3_9STRA5.390e-2451.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WLQ0_9STRA4.910e-848.48Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1XKY7_9STRA8.800e-633.68Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 148..182
NoneNo IPR availableCOILSCoilCoilcoord: 63..83
NoneNo IPR availableCOILSCoilCoilcoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18453contigEcto-sp13_S_contig18453:299..2293 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18453.5750.1mRNA_Ecto-sp13_S_contig18453.5750.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18453 299..2295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18453.5750.1 ID=prot_Ecto-sp13_S_contig18453.5750.1|Name=mRNA_Ecto-sp13_S_contig18453.5750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHE
MTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFAD
GKSGSDAGITGPDGAAGPERGLTITRAREIAARVSELTAALETSEAGLRA
AELSRRSAEVDAETAEERRRDLETLVADLKRLVIPGSRAAAAAGGGSSGV
ATASRDKDDDDDHAVGG
back to top