mRNA_Ecto-sp13_S_contig10038.58.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10038.58.1
Unique NamemRNA_Ecto-sp13_S_contig10038.58.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A6H5KQK5_9PHAE (PSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KQK5_9PHAE)

HSP 1 Score: 627 bits (1617), Expect = 4.860e-215
Identity = 351/358 (98.04%), Postives = 353/358 (98.60%), Query Frame = 1
Query:    1 SVSQAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXXGAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF 1074
            S  +AKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHIS DLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXX AETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGL GDA+EAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF
Sbjct:  310 SQKKAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISSDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXXXAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLGGDATEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF 667          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A7S2W121_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W121_9STRA)

HSP 1 Score: 300 bits (768), Expect = 8.440e-90
Identity = 181/328 (55.18%), Postives = 231/328 (70.43%), Query Frame = 1
Query:    1 SVSQAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLA----ESDXXXXXXXXXXXXXXXXXXXGAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSD 972
            +++ AKQK R RV PKMGKIDIDYQVLHDAFFK+Q KP LT  GD+YYEGKEFE K +E KPG ++  L+ ALG+ E+ PPPWLINMQRYGPP +YP+L+IPGLNAPIP GA +G+    WGKPPVD    PLYGDVF  A  +  D   +D+S WG+L     ES XXXXXXXXXXXXXXX    G +TP  E G  S VSGLETP++++DLRKRAG DTPDT+G+ + P+ELY+VVQ + + VGAG +FG D+KYVLP          G SGD        V V+LNP++++ Q+++E+ L++ +E+        GGA+G   +S+
Sbjct:  211 ALASAKQKGRGRVQPKMGKIDIDYQVLHDAFFKYQNKPSLTLHGDIYYEGKEFEVKLREKKPGLLTEQLKHALGMPENAPPPWLINMQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDEYNRPLYGDVFGRAEPEAADQVLVDRSLWGELGSEDEESXXXXXXXXXXXXXXXXDDMSGLDTPSTEAGMSSVVSGLETPESVVDLRKRAGTDTPDTSGILSAPKELYQVVQEKSAKVGAG-VFGTDKKYVLP---------TGGSGD--------VAVALNPEQLESQVSNEDFLKKSYED--------GGAEGDAGLSE 512          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A836CFT2_9STRA (Proline-rich spliceosome-associated family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT2_9STRA)

HSP 1 Score: 298 bits (763), Expect = 1.290e-88
Identity = 193/353 (54.67%), Postives = 233/353 (66.01%), Query Frame = 1
Query:   13 AKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXXGAETPMFEGGGV-SSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPR---DVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYK 1059
            AKQ+ RERV PKMGKIDIDYQVLHDAFFK QTKP +T+ GDLY+EGKEFE + +E KPG +S +LR ALG+ +  PPPWLINMQRYGPP SYPHLRIPGL+APIP GA +G+    WGKPPV+  G PLYGDVF     + ++   +D+SHWG++AE  XXXXXXXXXXXXXX       E P     G  SS++GLETPD ++DLRKR G++TP   G  A P+ELY VV    + VG GALFG D++Y +       GGAA               DV VS+NPDE++ QL D E LRE++E   +AA        +EDVSDIVAEE RKR           AA K K +K
Sbjct:  239 AKQRSRERVQPKMGKIDIDYQVLHDAFFKWQTKPHMTSVGDLYFEGKEFEVRLREKKPGQLSEELRAALGMPDGAPPPWLINMQRYGPPPSYPHLRIPGLSAPIPPGASFGYHPGGWGKPPVNEAGVPLYGDVFGTMGVE-EEAAAIDRSHWGEMAEXXXXXXXXXXXXXXXXGGAGALTEAPPTPMEGTESSMTGLETPDALLDLRKR-GLETPSDIGTPA-PRELYTVVGETSAGVG-GALFGADKRYAV-------GGAAXXXXXXXXXXXXXAADVAVSINPDEIEAQLEDAEALRERYEASLQAARPE-----REDVSDIVAEEARKRKRKLEKGKERAAAKKSKDFK 575          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A7S2HBQ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HBQ5_9STRA)

HSP 1 Score: 288 bits (737), Expect = 7.570e-88
Identity = 170/293 (58.02%), Postives = 211/293 (72.01%), Query Frame = 1
Query:   13 AKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXX-GAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDE 888
            +KQK R +V PK G+IDIDYQVLHDAFFK+QTKP LT  GD+YYEGKEFE K +E KPG +S  L+ ALG+ E+ PPPWLINMQRYGPP SYP+L+IPGLNAPIP G+++G+    WGKPPVD  G PLYGDVF  A     D +++D++ WGDL   +XXXXXXXXXXXXXXX     G ETP  E G  S  SGL+TP+++ DLRKRAG DTPDT+G+++ P+ELY+VVQ +   VGAG LFG D+KY +P                SE    DVQV+LNPD++ + ++DE
Sbjct:    5 SKQKMRAKVTPKTGRIDIDYQVLHDAFFKYQTKPQLTLHGDMYYEGKEFEVKLREKKPGLLSSGLKTALGMPENAPPPWLINMQRYGPPPSYPNLKIPGLNAPIPEGSQFGYHPGGWGKPPVDEMGRPLYGDVFGQADPAAHDEQQVDRALWGDLGSDEXXXXXXXXXXXXXXXTTDVSGLETPSTEAGISSVTSGLDTPESI-DLRKRAGTDTPDTSGIASAPKELYQVVQEKQVRVGAG-LFGTDKKYSMP----------------SE----DVQVALNPDQLSQGVSDE 275          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A7S3XPZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPZ4_HETAK)

HSP 1 Score: 292 bits (747), Expect = 8.430e-88
Identity = 199/362 (54.97%), Postives = 242/362 (66.85%), Query Frame = 1
Query:    1 SVSQAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGI-GEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXX-GAETPMFEGG-GVSSV-SGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF 1074
            ++ +AKQKQRERV PKMGKIDIDYQVLHDAFFK QTKP +T  G+LYYEGKEFE + ++  PG +S  LREALG+ GE  PPPWL+NMQRYGPP SYP LRIPGL AP+P GA +G+ +  WGKPPVD  G PLYGDVF     DG++ E  D++HWG+L E  XXXXXXXXXXXXXXX     G ETP+ +   G++SV SGLETP  + DLRKRAG+DTP+T  LSAVP++LYKVVQ  + A  AG                              APP +VQV+LNPD+++EQL D   LRE++E Q  +  S      +EDVSDI+A+E RKR          + A K K+YKD FKF
Sbjct:  115 AMKRAKQKQRERVQPKMGKIDIDYQVLHDAFFKWQTKPRMTTHGELYYEGKEFEVRLRDKMPGALSQPLREALGMEGETAPPPWLVNMQRYGPPPSYPRLRIPGLTAPLPPGAAFGYHTGGWGKPPVDETGRPLYGDVFGTEG-DGEEAEAQDRAHWGELEEXXXXXXXXXXXXXXXXXADDASGLETPLDDAATGLTSVTSGLETPGAL-DLRKRAGLDTPETP-LSAVPKDLYKVVQ--EQAADAGXXXXXXXXXXXX-----------XXXXXXTAPP-EVQVALNPDQLEEQLGDAAALREQYELQMESQRSD-----REDVSDIMADEARKRKRKLEK----QKAGKEKKYKD-FKF 449          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A7S2MJ71_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MJ71_9STRA)

HSP 1 Score: 288 bits (737), Expect = 6.910e-85
Identity = 170/293 (58.02%), Postives = 211/293 (72.01%), Query Frame = 1
Query:   13 AKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXX-GAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDE 888
            +KQK R +V PK G+IDIDYQVLHDAFFK+QTKP LT  GD+YYEGKEFE K +E KPG +S  L+ ALG+ E+ PPPWLINMQRYGPP SYP+L+IPGLNAPIP G+++G+    WGKPPVD  G PLYGDVF  A     D +++D++ WGDL   +XXXXXXXXXXXXXXX     G ETP  E G  S  SGL+TP+++ DLRKRAG DTPDT+G+++ P+ELY+VVQ +   VGAG LFG D+KY +P                SE    DVQV+LNPD++ + ++DE
Sbjct:  240 SKQKMRAKVTPKTGRIDIDYQVLHDAFFKYQTKPQLTLHGDMYYEGKEFEVKLREKKPGLLSSGLKTALGMPENAPPPWLINMQRYGPPPSYPNLKIPGLNAPIPEGSQFGYHPGGWGKPPVDEMGRPLYGDVFGQADPAAHDEQQVDRALWGDLGSDEXXXXXXXXXXXXXXXTTDVSGLETPSTEAGISSVTSGLDTPESI-DLRKRAGTDTPDTSGIASAPKELYQVVQEKQVRVGAG-LFGTDKKYSMP----------------SE----DVQVALNPDQLSQGVSDE 510          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A812UK03_SYMMI (SF3B2 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UK03_SYMMI)

HSP 1 Score: 273 bits (698), Expect = 1.170e-81
Identity = 188/378 (49.74%), Postives = 241/378 (63.76%), Query Frame = 1
Query:    1 SVSQAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDV-EEMDKSHWGDLAESDXXXXXXXXXXXXXXXXXXX----------------GAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLND---EEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF 1074
            ++ + KQKQR+++ PKMGKIDIDYQVLHDAFFK+QTKP ++  GDLYYEGKE+E   +E KPG +S +L  ALG+ E+ PPPWLINMQRYGPP SYP LRIPGLNAPIP GA YG+    WGKPPVD  G PLYGDVF   A++   V E +D+SHWG+L  +    XXXXXXXXXXXXXXXX                G ETP+   G  S VSGLETPDT+ DLRKR GV+TPD  G     +ELYKV+Q R +   +G  FG DR YVL      G GA              V+VS+NPD+++ ++++   +EGLR  +E Q    A+ G  + ++D +D   ++ ++R          ++  + KR+KD FKF
Sbjct:   29 ALKKGKQKQRDKMTPKMGKIDIDYQVLHDAFFKYQTKPKMSGHGDLYYEGKEYEVDMKEKKPGVLSEELITALGMLENAPPPWLINMQRYGPPPSYPSLRIPGLNAPIPEGASYGYHPGGWGKPPVDEYGRPLYGDVFGTYAQEDHAVLESIDRSHWGELGAASSESXXXXXXXXXXXXXXXXXXXXXRREYGGEADSSGIETPLSLDGMSSVVSGLETPDTI-DLRKREGVETPDPGG----HRELYKVIQERKTQGNSGQFFGSDRGYVL------GKGA--------------VEVSINPDQLESEVSELGHKEGLRGTYEAQ---LAAQGEGEYEDDRNDDPRQKRKRRA---------ESGAQSKRHKD-FKF 368          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A7S0NUG2_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NUG2_9EUKA)

HSP 1 Score: 253 bits (647), Expect = 1.470e-74
Identity = 177/341 (51.91%), Postives = 218/341 (63.93%), Query Frame = 1
Query:   22 KQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSH--WGDLAESDXXXXXXXXXXXXXXXXXXXGAETPMFE--GGGVSSVS----GLETPDTMMDLRKRA------GVDTPDTTGLSAVPQ-ELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKR 999
            KQ+ER+ PKMGKIDIDYQVLHDAFFK+QTKP L+  GD YYEGKE EA  +E KPG +S  L +ALG+    PPPWL+NMQRYGPP SYP+L+IPGLNAPIP GA YG+    WGKPPVD  G PLYGDVF  AA + +D  + + S   WG + E D    XXXXXXXXXXXXXX    +   +    G+SSVS    GL TPD++  LRK A      GVDTP+++ +S+ P  +L++VV+ RDS VG GA FG    Y LP SK            A +     V V+L+P E+ E+L DE  L+ ++EEQ  A          EDVSDI+ E+ RKR
Sbjct:    7 KQKERMQPKMGKIDIDYQVLHDAFFKYQTKPRLSGHGDTYYEGKEQEAVLREKKPGQVSEALSKALGMEAGGPPPWLVNMQRYGPPPSYPNLKIPGLNAPIPEGASYGYHPGGWGKPPVDEFGRPLYGDVFGTAAPEPEDQVQANFSRDAWGAMEEGDDEEDXXXXXXXXXXXXXXDDRSSVTEDEINAGISSVSSVPSGLATPDSL-HLRKGADGIVTPGVDTPESSSVSSQPPPQLFQVVEQRDSRVG-GAAFGSSHTYNLPTSKG-----------APKTAQGGVAVALDPAEL-EKL-DEATLKARYEEQRNAEREANAP---EDVSDIIEEQERKR 329          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A8J9WSR4_9CHLO (Splicing factor 3B subunit 2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WSR4_9CHLO)

HSP 1 Score: 259 bits (661), Expect = 8.230e-73
Identity = 179/359 (49.86%), Postives = 228/359 (63.51%), Query Frame = 1
Query:   16 KQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKS-HWGDLAESDXXXXXXXXXXXXXXXXXXXGAE--TPMFEGGGVSSVSGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAA---GLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF 1074
            +QKQ++++ PKMGK+DIDYQVLHDAFFKHQTKP  +  GDLYYEGKEFEAK +  KPG +S DLR+ALG+GE  PPPWLINMQRYGPP SYP L+IPGLNAPIP GA++G+    WGKPPVD +GNPLYGDVF    +D DD E +DK+  WGDL   + XXXXXXXXXXXXXXX    A+  T +  G   S  SG+ETP+ ++DLRK    + P           LY+V++ + + VG  AL G D  YV+PG+ A  G  A         S   P DV+V+++P E++    D+ G+R  +EE+    A    A  +ED SD+VA     +          K   K K+ K+ FKF
Sbjct:  345 RQKQKDKMQPKMGKLDIDYQVLHDAFFKHQTKPSFSVMGDLYYEGKEFEAKIRGAKPGVLSEDLRKALGMGESSPPPWLINMQRYGPPPSYPDLKIPGLNAPIPPGAQFGYQPGGWGKPPVDEEGNPLYGDVFGQFEQDADD-ENVDKATRWGDLESEEEXXXXXXXXXXXXXXXTESLADGITSIASGYNSSLPSGIETPE-VIDLRKGKPGERP-----------LYQVLEQQAAPVG-NALMGSDHTYVIPGAGAAAGAGAKXXXXXAKRSGLAPGDVEVAIDPAELE--GLDDAGVRALYEER---LAQQRTASAREDFSDLVAA----KAAQQKRKAAEKKEGKAKKQKEQFKF 680          
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Match: A0A383VJH1_TETOB (PSP domain-containing protein n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A383VJH1_TETOB)

HSP 1 Score: 258 bits (658), Expect = 1.340e-72
Identity = 176/365 (48.22%), Postives = 233/365 (63.84%), Query Frame = 1
Query:   16 KQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHISPDLREALGIGED-DPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKS-HWGDLAESDXXXXXXXXXXXXXXXXXXXGAETPMFEG---------GGVSSV-SGLETPDTMMDLRKRAGVDTPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAAGLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGAKGKEDVSDIVAEENRKRXXXXXXXXXXKAADKGKRYKDSFKF 1074
            KQKQR+R++ K GK+DI Y+VL+DAFFKHQ KP L+  G+LYYEG+E+EA+ +  +PG +SP+LREALG+ E   PPPWL+NMQRYGPP SYP+L+IPGLNAPIP GA +G+ +  WGKPPVD+ GNP+YGDVF LA  DG+   E+DK   WG+L E +   XXXXXXXXX  XX     E  +  G          G+SS+ SGLETPD  ++LRK+ G     T   SA    LY V++ R ++VG G L G D  YV+PG++    GA    G    AP  DV+V+L+P+E++    D EG+R  +E +  AA     A+ +ED SD+VA     +          +AA   K+ KD+FKF
Sbjct:  308 KQKQRDRMSAKTGKMDIAYEVLYDAFFKHQRKPRLSGLGELYYEGREYEARLEHLRPGVLSPELREALGMSEPASPPPWLVNMQRYGPPPSYPNLKIPGLNAPIPPGASFGYHAGGWGKPPVDAAGNPIYGDVFGLAQDDGESDAEVDKGGRWGELEEYEEEEXXXXXXXXXADXXEGMPDEGDIMAGIATDATGIATGISSLQSGLETPDVALNLRKQ-GDSVAGTE--SAQHPALYTVLEQRKASVGTG-LLGTDHTYVIPGAE----GAKRKPGAPGAAP--DVEVTLSPEELE--GLDNEGIRALYEAKMAAAQQAAKAE-REDFSDMVARHAAAQKRKIAERAETRAA---KKQKDNFKF 656          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10038.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQK5_9PHAE4.860e-21598.04PSP domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2W121_9STRA8.440e-9055.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CFT2_9STRA1.290e-8854.67Proline-rich spliceosome-associated family protein... [more]
A0A7S2HBQ5_9STRA7.570e-8858.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XPZ4_HETAK8.430e-8854.97Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MJ71_9STRA6.910e-8558.02Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A812UK03_SYMMI1.170e-8149.74SF3B2 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S0NUG2_9EUKA1.470e-7451.91Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A8J9WSR4_9CHLO8.230e-7349.86Splicing factor 3B subunit 2 n=1 Tax=Coccomyxa sp.... [more]
A0A383VJH1_TETOB1.340e-7248.22PSP domain-containing protein n=2 Tax=Scenedesmace... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10038contigEcto-sp13_S_contig10038:1195..5414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score607.1
Seed ortholog evalue5.2e-171
Seed eggNOG ortholog2880.D7FNF6
Preferred nameSF3B2
Model size2142
KEGG koko:K12829,ko:K16061
KEGG Pathwayko03040,ko04120,ko04215,ko05145,ko05200,ko05222,map03040,map04120,map04215,map05145,map05200,map05222
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034622,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0065003,GO:0070013,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Exons5
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsCOG5182@1,KOG2330@2759
Cds size1029
COG Functional cat.AV
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10038.58.1prot_Ecto-sp13_S_contig10038.58.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10038 2260..5366 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462502.2089891-UTR-Ecto-sp13_S_contig10038:1194..22591681462502.2089891-UTR-Ecto-sp13_S_contig10038:1194..2259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10038 1195..2259 -
1681462502.2675407-UTR-Ecto-sp13_S_contig10038:5366..54141681462502.2675407-UTR-Ecto-sp13_S_contig10038:5366..5414Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10038 5367..5414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462502.2188058-CDS-Ecto-sp13_S_contig10038:2259..24311681462502.2188058-CDS-Ecto-sp13_S_contig10038:2259..2431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10038 2260..2431 -
1681462502.2266765-CDS-Ecto-sp13_S_contig10038:2858..33571681462502.2266765-CDS-Ecto-sp13_S_contig10038:2858..3357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10038 2859..3357 -
1681462502.2348185-CDS-Ecto-sp13_S_contig10038:3776..39691681462502.2348185-CDS-Ecto-sp13_S_contig10038:3776..3969Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10038 3777..3969 -
1681462502.2438169-CDS-Ecto-sp13_S_contig10038:4319..44571681462502.2438169-CDS-Ecto-sp13_S_contig10038:4319..4457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10038 4320..4457 -
1681462502.2531528-CDS-Ecto-sp13_S_contig10038:5339..53661681462502.2531528-CDS-Ecto-sp13_S_contig10038:5339..5366Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10038 5340..5366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10038.58.1

>prot_Ecto-sp13_S_contig10038.58.1 ID=prot_Ecto-sp13_S_contig10038.58.1|Name=mRNA_Ecto-sp13_S_contig10038.58.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=343bp
MGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHIS
PDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGF
GSSEWGKPPVDSKGNPLYGDVFNLAAKDGDDVEEMDKSHWGDLAESDDDD
DDEDEEEEEEEEEEDGGAETPMFEGGGVSSVSGLETPDTMMDLRKRAGVD
TPDTTGLSAVPQELYKVVQARDSAVGAGALFGGDRKYVLPGSKAGGGGAA
GLSGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQERAAASVGGA
KGKEDVSDIVAEENRKRKRKLEKKEKEKAADKGKRYKDSFKF*
back to top

mRNA from alignment at Ecto-sp13_S_contig10038:1195..5414-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10038.58.1 ID=mRNA_Ecto-sp13_S_contig10038.58.1|Name=mRNA_Ecto-sp13_S_contig10038.58.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4220bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10038:1195..5414- (Ectocarpus species13 EcNAP12_S_4_19m)
TCTGTCTCCCAGGCGAAGCAGAAGCAGAGGGAGAGAGTCGCTCCAAAGAT GGGGAAGATCGACATCGACTATCAGGTGCAGCGGTTGTGTACTGACATGA GCACGCGGCGTGTCGGCATGGGCTCCGGAATAGCTCGGACGGTGTCCTGT GGCTGTTGATGCTTGTTGGCCGTAACAATATTTTCCACCAGATTATGTAG TTCTGACACGAAACGAGAGCGAAGCTTTGATTGCTACGAAATGCAATGTA GTCAAACTTAACCATTCACAGCAGTGGAAGGAGGGTTGATTCTCCCGTTG TCACGATACATCGAACGCATGCGAGAAGTATAGCAGTGACAAAAAAGAAT TGAAACCTTCGTAAAAACCCTCCCAAATAAAACGTGAGAGTTATCCCGTT GGGCAATTTTGCCGATCAGCTTCACGTGAAAAGCCTTTCTCCGCATGAGA AAATCCCCGCCCGCCACCTATCGCGGCGAGCACGGAAAGTCTGGGGCATT CCGTCCTTGATATCATTTAATGATCCCGTTGAGATGTTTCGCCAACCCCC CCCCCACACACACACAACAGTCGCCGAAATGGTCTCAACGACTTTGGCAT CCCCCCGGGGGCTGTTCGCCCCGGGGTGTAAGTTGTATTGGCAGTTTTTT TCAGAGATCCTCTTAAAGGGGAGCTGGAATACGAAGGGACACAACGTAGT TGGGAACACATGGGGAAATGGGTTTCCGACGATGCGCACCGCCCATGCCC GCTGCATCTCCTTCCCTGCAACGGTGTTGGCGTCTATGCACACGACCTTG TTGCATTTTATTGCGGTGTCAAGCCGTTTCATCCGTCTCCAGAAAACCTT AGCCCTGACACTGTGTGTCTTGGGTCTTGGAAGTTCTTCCTGCAAACCGT ACCGCACGACATTGCTCACGTGTGTACTCCTACCACCCCCGCCCCCCCGA ATTGTAGGTGCTGCACGACGCATTCTTCAAGCACCAGACCAAGCCGCCGC TGACAAACCCGGGGGATCTGTACTACGAGGGCAAGGAGTTCGAGGCCAAG AACCAGGAGCACAAGCCCGGGCACATCAGCCCAGACTTGAGAGAGGTCCG ACGCTTTTTCCTTCTTGTCGTGTTTTTTTGTTTGCTGGTCACTTTTTGAT CGCGAGCAAGAGAAGCGTTGACAAATACGTGCGTCGAGGATGACACGGCA TCTACACGGCATGTACTCCGCGTGTTTGGTTGGTTGTCAGGCTCACGTAG CGAGTATTTTGTTCATTTCCGACGTGTCTCCCACGCAGTTAGTTGAGTGT GAAAGCGCTCGTGACGCGTGCGTACCAACAAAAGCTTGCAAATTGAGATG GGAGTTGACGCCCGGCCTTCATAACATCATCACGCTGCTGCTGCTGCCTC CCGGGGTGTTGCTGTCGGTGGCGCTTGGTTGGTGTGTGGCCGCAGGCGCT GGGCATCGGAGAGGACGATCCCCCGCCATGGCTCATCAACATGCAAAGAT ACGGGCCGCCGTTGTCCTACCCACACCTCCGAATCCCGGGGCTCAACGCT CCTATCCCAGCGGGGGCCCGGTACGGGTTCGGTTCGTCGGAGTGGGGGAA GCCTCCGGTGGACTCGAAGGGAAACCCTCTGTACGGAGGTGAGGCTGATC TATTCAGCTGCCGTCGTCTCTTCTGCCCGTGTTATTTTTGCTTGGCTGGG GGGCACTTTGGCCGTTGGGCGCGCTGTTTGCTACCACTTTGGCCGTAGGA CGAGCTGTTGAGCTGATTGCTACCGTATGAGTATGCGCCTTGCGGTGTGC TTGTAGTCACATGGTTGTGGGACATGACATTGTCGATCGTGCCGCCTCTT GCGTACACCCAACTAGGCGAATCGCCAACGATCGGGCCGGTTGTCGCACG TACACACGTCGTACACAACATACCGTGATGCCTACGCTGCTGTACTCTCG CGTAGAAACGCTCGCAATCACCCTCACGCATACCGCCACTGTGCCCCCCC CGCCGCCACTGTCCTCAACGGAACATGAACAACTACGCGGAAACACGATC AAATTAGACGTGTTCAATCTGGCCGCGAAGGACGGGGACGACGTCGAAGA GATGGACAAGTCTCACTGGGGAGATTTGGCCGAATCCGACGACGACGACG ACGACGAGGACGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGACGGCGGG GCGGAAACGCCTATGTTCGAGGGCGGCGGCGTCTCGAGTGTCTCCGGGCT CGAGACGCCGGACACGATGATGGACCTCCGCAAGAGGGCCGGGGTGGACA CCCCCGACACGACCGGGCTGTCCGCGGTGCCCCAGGAGCTCTACAAGGTG GTCCAGGCGAGGGATTCCGCCGTGGGGGCCGGGGCTCTGTTCGGCGGGGA CCGAAAGTACGTCCTGCCCGGCTCCAAGGCCGGCGGGGGCGGCGCGGCGG GGCTCAGCGGGGACGCTTCCGAGGCACCCCCGCGAGACGTGCAGGTGTCC CTTAACCCCGACGAGGTGGACGAGCAGCTCAACGACGAGGAGGGCCTCCG GGAGAAGTGAGAACAAGAAATAATTACCGGGAGGATTTTGTTTTTCTGCT GTGTACTTCGGTAGGGTAGTAATGATTTACGCGCAAGCAATGCCAGAGAA GTAGATGACTTTGCGCGTTCGAGATGGGGATGTGGAGATATCTGTTCGGG GTTCGCGTGCCTCCTGCCAAATATTGGACTTGGTGTTTGGAATTGTTGGG GCGGGAAGGAGGGTTGTTTGGGTTGCTGTCCTTATTTTCGCGGTTCATGG TGTGGAAAGTGGGGCTTTGTCTTTCGGTGCGTTCTCGTTTCCGCCGGAGG ATGTGCCGAATGACGGCGGGGATAACAATTGCTTGTCGTTGGTTGTGTTC CCAACAGCGTGTCTTTCCTCTCAGCTGACCTCCGTGCCCTCTTCTCAAAA CCGCCCTGCCCTCCTCCTCCTCTTGTCCTCTAGGTTCGAGGAGCAAGAGC GAGCGGCCGCGTCCGTCGGCGGCGCCAAGGGGAAGGAAGACGTGAGCGAT ATCGTGGCAGAGGAGAACCGTAAGCGCAAGCGCAAGCTCGAGAAGAAGGA GAAGGAAAAGGCGGCCGACAAGGGCAAGCGCTACAAGGACTCCTTCAAGT TTTAACGCTTTGGGGTACGCGTGGTTCTCGGCTCCAATTTTAATTTTGAT TTTTTGTTCGACAGGATTCGCGTGTGTGCTGTGCTTCTCTTGCCTCGTTT TTTTGCCCGGTTGGTTTGGTCTCTTGGTCGGTCGTTCGTGCCACCTGCTG TGGTCGTCGATCGTCTTGACCGTCGCTGCTTTGTTTCGTTTGACCTCGGC TGGTTTCGTTCATATTGTATTTTTGTCTCTTTTTTTTACTCACGCTCTCC CTGGTGGACTACTTTGGTTCAGCTTTTTCCTGTCGTGGCACTTGTATCCG CAGAGACAAGTGTTTGGATCAACCCTGCTCGGTCTTCTTAGATGGAAGAA GATTGACCTATGTAGACGGTCTAGCTCTCTCCGTCTATCGCGTTTGTCGT GCGCTTTATTTTGAGGCGACGGAGACGGTGACGATGTAAGAAGATGCCGA TCGATATGAAAACAATAAAAAAACAAAAAAAAGAAATGCCGGCTCACGTA GCGTTCAACGAGCGCGCGTGGCTTGAACAAATAGAAAAAAGGGGGGGAGC CCGTGGTTTCCTCTCGTCTTGAGAAGCAAGGCAAAAAGCGCGGCTATCGA AAGGGTCGGTGTTGCGGCGCCGAGTTATCCTCACGCTTATTTTTCTGTCT CCACCAGCTGAGGGACTGCTAGCAATGGTTGACTTGGGGGGCGATACTCC AAACGGAGGGGTTTTCATCCACGTGCAGGGGCGAGGCGCGTCTGGTTGTC ATCCCCGGCCGCGGTCAGAAGAGCGTGTGACGTCAAGCTCTTGGTTGTCT GTCTGACTGTCCGGTTTGAACACGGCCGTTCGGCGGAGAAGTCAGGGATA TATTTGTTGCCGCTTGTGACGGCGGCGGCGGCAGCGACGGCATAGTGCCG CAAGAATCGTTCGTTAGTGCCGACGGTAGGCTCTCGTTACACCAGTGGTC CACTTTGTGTGGTGTGTAGGGAGAGCAAGCGACGACGGCGTATGCGCGGT GTCTGACGTGTAGTGTGTTTTTGTTCGTTGCCCGCAAAAGCGTGGTAGAA GTACTGGGCGTATCCTAGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10038:1195..5414-

>mRNA_Ecto-sp13_S_contig10038.58.1 ID=mRNA_Ecto-sp13_S_contig10038.58.1|Name=mRNA_Ecto-sp13_S_contig10038.58.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10038:1195..5414- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAGATCGACATCGACTATCAGGTGCTGCACGACGCATTCTTCAA
GCACCAGACCAAGCCGCCGCTGACAAACCCGGGGGATCTGTACTACGAGG
GCAAGGAGTTCGAGGCCAAGAACCAGGAGCACAAGCCCGGGCACATCAGC
CCAGACTTGAGAGAGGCGCTGGGCATCGGAGAGGACGATCCCCCGCCATG
GCTCATCAACATGCAAAGATACGGGCCGCCGTTGTCCTACCCACACCTCC
GAATCCCGGGGCTCAACGCTCCTATCCCAGCGGGGGCCCGGTACGGGTTC
GGTTCGTCGGAGTGGGGGAAGCCTCCGGTGGACTCGAAGGGAAACCCTCT
GTACGGAGACGTGTTCAATCTGGCCGCGAAGGACGGGGACGACGTCGAAG
AGATGGACAAGTCTCACTGGGGAGATTTGGCCGAATCCGACGACGACGAC
GACGACGAGGACGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGACGGCGG
GGCGGAAACGCCTATGTTCGAGGGCGGCGGCGTCTCGAGTGTCTCCGGGC
TCGAGACGCCGGACACGATGATGGACCTCCGCAAGAGGGCCGGGGTGGAC
ACCCCCGACACGACCGGGCTGTCCGCGGTGCCCCAGGAGCTCTACAAGGT
GGTCCAGGCGAGGGATTCCGCCGTGGGGGCCGGGGCTCTGTTCGGCGGGG
ACCGAAAGTACGTCCTGCCCGGCTCCAAGGCCGGCGGGGGCGGCGCGGCG
GGGCTCAGCGGGGACGCTTCCGAGGCACCCCCGCGAGACGTGCAGGTGTC
CCTTAACCCCGACGAGGTGGACGAGCAGCTCAACGACGAGGAGGGCCTCC
GGGAGAAGTTCGAGGAGCAAGAGCGAGCGGCCGCGTCCGTCGGCGGCGCC
AAGGGGAAGGAAGACGTGAGCGATATCGTGGCAGAGGAGAACCGTAAGCG
CAAGCGCAAGCTCGAGAAGAAGGAGAAGGAAAAGGCGGCCGACAAGGGCA
AGCGCTACAAGGACTCCTTCAAGTTTTAA
back to top