mRNA_Ecto-sp13_S_contig18448.5749.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18448.5749.1
Unique NamemRNA_Ecto-sp13_S_contig18448.5749.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18448.5749.1 vs. uniprot
Match: D8LB36_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.180e-10
Identity = 35/40 (87.50%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  170 MSPLTFAAEKGSSSVVKILLKHGANVSIKENCGSTALHLS 289
            MSPL FAAEKGS SVVKILLK+GANVSIKEN G TALHLS
Sbjct:    1 MSPLMFAAEKGSCSVVKILLKYGANVSIKENGGFTALHLS 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18448.5749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB36_ECTSI9.180e-1087.50EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18448contigEcto-sp13_S_contig18448:2621..3197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score67.4
Seed ortholog evalue5.8e-09
Seed eggNOG ortholog2880.D8LB36
Model size577
KEGG koko:K10334
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size399
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.1917145-UTR-Ecto-sp13_S_contig18448:2620..27741681462948.1917145-UTR-Ecto-sp13_S_contig18448:2620..2774Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18448 2621..2774 +
1681462948.2148182-UTR-Ecto-sp13_S_contig18448:3173..31971681462948.2148182-UTR-Ecto-sp13_S_contig18448:3173..3197Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18448 3174..3197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.2041612-CDS-Ecto-sp13_S_contig18448:2774..31731681462948.2041612-CDS-Ecto-sp13_S_contig18448:2774..3173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18448 2775..3173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18448.5749.1prot_Ecto-sp13_S_contig18448.5749.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18448 2775..3173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18448.5749.1

>prot_Ecto-sp13_S_contig18448.5749.1 ID=prot_Ecto-sp13_S_contig18448.5749.1|Name=mRNA_Ecto-sp13_S_contig18448.5749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MCLDGMSPLTFAAEKGSSSVVKILLKHGANVSIKENCGSTALHLSSQHGH
PTVTRLLASAGASLEAVNKRHCTPLHLAAQRGQWKAMVTLIEAGANVNSR
MLDGATPLLIASTQGYKDAIKELLRAKADPQF*
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mRNA from alignment at Ecto-sp13_S_contig18448:2621..3197+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18448.5749.1 ID=mRNA_Ecto-sp13_S_contig18448.5749.1|Name=mRNA_Ecto-sp13_S_contig18448.5749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=577bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18448:2621..3197+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCACAGCTCAAAATCAACAGATAGCGTGCCCCCAACACCCCACCCAAAG
CAGACATCTCGAGGCCCCGAGAATGCACTGCACAACGCTTCCCGTCGTGG
CGCCTCCGAGCTCGTAACAGCTCTTCCTTCAAGCGGAGCTGTTGATGTGA
ACCAATGTGCCTGGATGGCATGAGCCCTCTCACGTTTGCCGCCGAGAAGG
GTAGCTCCAGCGTTGTCAAGATCCTCCTAAAACACGGAGCCAACGTATCA
ATCAAGGAGAATTGCGGCTCCACAGCTCTCCATCTTTCTTCGCAACACGG
ACACCCGACCGTGACCAGGCTCCTTGCGTCGGCCGGGGCATCCCTCGAAG
CGGTCAACAAACGGCACTGTACACCGCTTCACTTGGCAGCGCAACGAGGG
CAATGGAAGGCGATGGTAACTCTGATTGAGGCAGGAGCGAACGTTAACAG
CCGTATGTTGGATGGAGCGACACCGCTGTTGATAGCATCCACTCAGGGAT
ACAAGGACGCCATCAAGGAGCTCCTTCGAGCGAAAGCGGATCCGCAGTTC
TAGCAGAACACGTCGGGGAACCTCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18448:2621..3197+

>mRNA_Ecto-sp13_S_contig18448.5749.1 ID=mRNA_Ecto-sp13_S_contig18448.5749.1|Name=mRNA_Ecto-sp13_S_contig18448.5749.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18448:2621..3197+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCCTGGATGGCATGAGCCCTCTCACGTTTGCCGCCGAGAAGGGTAG
CTCCAGCGTTGTCAAGATCCTCCTAAAACACGGAGCCAACGTATCAATCA
AGGAGAATTGCGGCTCCACAGCTCTCCATCTTTCTTCGCAACACGGACAC
CCGACCGTGACCAGGCTCCTTGCGTCGGCCGGGGCATCCCTCGAAGCGGT
CAACAAACGGCACTGTACACCGCTTCACTTGGCAGCGCAACGAGGGCAAT
GGAAGGCGATGGTAACTCTGATTGAGGCAGGAGCGAACGTTAACAGCCGT
ATGTTGGATGGAGCGACACCGCTGTTGATAGCATCCACTCAGGGATACAA
GGACGCCATCAAGGAGCTCCTTCGAGCGAAAGCGGATCCGCAGTTCTAG
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