mRNA_Ecto-sp13_S_contig18442.5747.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18442.5747.1
Unique NamemRNA_Ecto-sp13_S_contig18442.5747.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: D7FSK5_ECTSI (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK5_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.610e-54
Identity = 89/94 (94.68%), Postives = 90/94 (95.74%), Query Frame = 1
Query:    1 MGKHVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVPSFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEALG 282
            MGKHVFVTVGTTKFDSLVQAVDNAVVLS+LCSKGF SLTVQIGHGQHVPSFPVDQ TALDC WYRFKQTLHEDMARADVVVSHAGAG VMEALG
Sbjct:    1 MGKHVFVTVGTTKFDSLVQAVDNAVVLSSLCSKGFTSLTVQIGHGQHVPSFPVDQ-TALDCRWYRFKQTLHEDMARADVVVSHAGAGSVMEALG 93          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: G4Z1Z7_PHYSP (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=4 Tax=Phytophthora TaxID=4783 RepID=G4Z1Z7_PHYSP)

HSP 1 Score: 94.0 bits (232), Expect = 2.870e-22
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 HVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVP--SFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            H FVTVGTTKFD+L+ A+D    LS L ++GF SL +QIGHG+HVP  SFP      L+   YR      +D+ARAD+V+SHAGAG +M+ L
Sbjct:    2 HAFVTVGTTKFDALISALDTDACLSALVARGFTSLRMQIGHGEHVPRASFP-----GLELSHYRHDPQYKKDVARADLVISHAGAGSIMDGL 88          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: A0A662WVV2_9STRA (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVV2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.870e-22
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:   13 VFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVP--SFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            VFVTVGTTKFD+LV+A+D+   L+ L ++GF  L +QIGHG+HVP  SFP      L+  +YR      +D+ARAD+V+SHAGAG +M+AL
Sbjct:    3 VFVTVGTTKFDALVRALDSDACLAALVARGFSRLRLQIGHGEHVPRASFP-----GLELSYYRHDAGYKQDVARADLVISHAGAGSIMDAL 88          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: A0A3R7KHJ4_9STRA (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KHJ4_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.990e-22
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   10 HVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVP--SFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            H FVTVGTTKF++L++A+D    LS L ++GF SL +QIGHG H+P  SFP      L+  +YR      +D+ RAD+++SHAGAG +M+AL
Sbjct:    2 HAFVTVGTTKFEALIEALDTDACLSALVARGFNSLRLQIGHGDHIPRMSFP-----GLELSYYRHDPQYKQDVNRADLIISHAGAGSIMDAL 88          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: UPI000359DB7A (UDP-N-acetylglucosamine transferase subunit ALG13 homolog n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI000359DB7A)

HSP 1 Score: 92.4 bits (228), Expect = 1.210e-21
Identity = 45/97 (46.39%), Postives = 65/97 (67.01%), Query Frame = 1
Query:    1 MGKHVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVPSFPVDQQT---ALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEALG 282
            MGK +FVTVGTT+FDSL++ + +   L TL + G+  LT QIG G++ PS    +     A+   W+R K ++ +D+A +D+VVSHAGAG VM+ LG
Sbjct:    1 MGKTIFVTVGTTQFDSLIKKITSEEALETLAALGYSQLTAQIGRGEYEPSESTSRTNGHPAVSVSWFRLKASIEDDIAASDLVVSHAGAGSVMDCLG 97          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: A0A2R5GZU5_9STRA (UDP-N-acetylglucosamine transferase subunit ALG13-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZU5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 3.020e-21
Identity = 50/105 (47.62%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    7 KHVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVP--------------SFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            K VFVTVGTT FD+LV+A+D+  V+  L  +GF SLT+QIG G +VP              + P    T   C +YRFK TL  DM  A ++VSHAGAG +ME+L
Sbjct:   15 KPVFVTVGTTSFDALVEALDDESVVQALRQRGFTSLTIQIGRGTYVPKRIGAVEEGSAEAATQPAASATFFPCRYYRFKSTLENDMKSAALIVSHAGAGSIMESL 119          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: UPI000C6D85AD (UDP-N-acetylglucosamine transferase subunit ALG13 homolog isoform X1 n=2 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D85AD)

HSP 1 Score: 90.1 bits (222), Expect = 3.670e-21
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    7 KHVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVPSFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            K +FVTVGTT FD L++ + +  VL  + S  F  L +Q+G+G + P   +++   ++  WYR+K++LH DM  A +V+SHAGAGC++EAL
Sbjct:    6 KSIFVTVGTTSFDKLIRRICSLEVLQIIKSHNFTKLVLQVGNGSYEPE--LEKNNDIEISWYRYKESLHNDMKEASLVISHAGAGCILEAL 94          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: A0A2P8ZG67_BLAGE (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Blattella germanica TaxID=6973 RepID=A0A2P8ZG67_BLAGE)

HSP 1 Score: 90.5 bits (223), Expect = 6.500e-21
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    7 KHVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVPSFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            KHVF TVGTTKFD  + A+ +  +L+ L S+G+ SLT+QIGHG  +P  P  ++  ++   +RFK +L  D+  AD+V+SHAGAG  +EAL
Sbjct:    4 KHVFATVGTTKFDLFISALSSQNILNALASRGYGSLTMQIGHGSTIP--PSGKREGIEVDHFRFKDSLTSDVRSADLVISHAGAGSCLEAL 92          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: M4BYJ6_HYAAE (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYJ6_HYAAE)

HSP 1 Score: 90.1 bits (222), Expect = 9.200e-21
Identity = 49/92 (53.26%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   10 HVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVP--SFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            HVFVTVGTT+FD+LV A+D    LS L  +GF SL +QIGHG +VP  SFP      L+  +YR       D+A+AD+VVSHAGAG +M++L
Sbjct:    2 HVFVTVGTTRFDALVAALDTDACLSALVDRGFTSLRMQIGHGVYVPRPSFP-----GLELSFYRHDPHYKNDVAKADLVVSHAGAGSIMDSL 88          
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Match: A0A0P1AQ85_PLAHL (N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQ85_PLAHL)

HSP 1 Score: 89.0 bits (219), Expect = 2.600e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   10 HVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVPSFPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEAL 279
            H FVTVGTTKFD+L++A+D    LS L S+GF S+ +QIGHG+HVP       + L   +YR       D+A AD+++SHAGAG +M+ L
Sbjct:    2 HAFVTVGTTKFDALIEALDTDACLSALVSRGFTSIRMQIGHGKHVPRASF---SGLLMSYYRHDPQYKRDVAAADLIISHAGAGSIMDGL 88          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18442.5747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSK5_ECTSI1.610e-5494.68N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
G4Z1Z7_PHYSP2.870e-2253.26N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A662WVV2_9STRA2.870e-2253.85N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A3R7KHJ4_9STRA6.990e-2250.00N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
UPI000359DB7A1.210e-2146.39UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
A0A2R5GZU5_9STRA3.020e-2147.62UDP-N-acetylglucosamine transferase subunit ALG13-... [more]
UPI000C6D85AD3.670e-2143.96UDP-N-acetylglucosamine transferase subunit ALG13 ... [more]
A0A2P8ZG67_BLAGE6.500e-2148.35N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
M4BYJ6_HYAAE9.200e-2153.26N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]
A0A0P1AQ85_PLAHL2.600e-2048.89N-acetylglucosaminyldiphosphodolichol N-acetylgluc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18442contigEcto-sp13_S_contig18442:204..1300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score176.4
Seed ortholog evalue6.4e-42
Seed eggNOG ortholog2880.D7FSK5
Preferred nameALG13
Model size288
KEGG koko:K07432,ko:K07441,ko:K10742,ko:K11855,ko:K20045
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,ko03030,map00510,map00513,map01100,map03030
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004577,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019898,GO:0031090,GO:0031312,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042406,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons2
EggNOG free text desc.Glycosyltransferase family 28 C-terminal domain
EggNOG OGsCOG5017@1,KOG3349@2759
EC2.4.1.141,3.4.19.12,3.6.4.12
Cds size288
COG Functional cat.T
CAZyGT1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko01003,ko03032,ko04121,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.0508237-CDS-Ecto-sp13_S_contig18442:203..3261681462948.0508237-CDS-Ecto-sp13_S_contig18442:203..326Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18442 204..326 -
1681462948.0642157-CDS-Ecto-sp13_S_contig18442:1135..13001681462948.0642157-CDS-Ecto-sp13_S_contig18442:1135..1300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18442 1136..1300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18442.5747.1prot_Ecto-sp13_S_contig18442.5747.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18442 204..1300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18442.5747.1

>prot_Ecto-sp13_S_contig18442.5747.1 ID=prot_Ecto-sp13_S_contig18442.5747.1|Name=mRNA_Ecto-sp13_S_contig18442.5747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MGKHVFVTVGTTKFDSLVQAVDNAVVLSTLCSKGFKSLTVQIGHGQHVPS
FPVDQQTALDCGWYRFKQTLHEDMARADVVVSHAGAGCVMEALGES
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mRNA from alignment at Ecto-sp13_S_contig18442:204..1300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18442.5747.1 ID=mRNA_Ecto-sp13_S_contig18442.5747.1|Name=mRNA_Ecto-sp13_S_contig18442.5747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1097bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18442:204..1300- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAGCACGTGTTCGTTACGGTGGGCACCACCAAGTTCGACTCTCT AGTCCAAGCCGTCGACAACGCGGTGGTACTGTCCACCCTGTGCTCAAAAG GATTCAAGTCGCTTACTGTGCAGATCGGCCACGGACAGCACGTGCCTTCC TTCCCTGTTGACCAGGTGGTGTGTGCGTGTGTCTCTGTGATGCGAACATG TGTGGTATCATTTGGGAGAGGGGAATCAAGACCAAACAACAAAGTTGCTT CAGACAATAGTCCGGCTTTCGGTGCAAGACTCACCGCTTTGGGACCAGCC CGCTTTGGAACCAAGCCTTTGCGGTTCGCCGGTCGTGTGGTGCCACATGC CTCATGCGCCGCAGAGGCAAGCTTGTCCGAAAGCTGTTCCAAGTAGTCTC AACTACTTGTGTCGTCTAGGTAAAGGACGATTTCCTAGCGAAAAGGGAGA GAAATGATGCTGGTAGGCAAGGGTTTGCAGGCCCTTGATTTGAGTTATAA TATACTCTCATCTGACAGCGGCCACAGGGTTGCGGAGTAATCGGCCACCA TCGATAGCAAAGGTCGACCTCGTCCCGTCTCTTGCCAACCTAGTGAGAGA GCATTTTGCTGCATGTTGGTTGTTATGATGTCCGAGAAGCTGTGTAGGCC TCTAGAAAAGGAAACTTGAGCTCGAGTCGTGGGACGTCTGTTCTTCAATA CCGGATCAAAAGCATCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCCCTC TCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCCCTCTCTCTCTCCC TCTCTCTCCCCCTCTCCCTCCCCCTCTCTCTCCCCCTCTCTCTCCCCCTC TCCCTCCCCCTCTCTCTCCCCCTCTCTCCTCTCTCGGCCTGTCTGTCTTG CTGACTCTGCCTTGCTTCGAATAACCCGATTTTCGACGACGTCAATTCGT TTTTGTCTGTACCGTACATGAGAGCAGACAGCCCTCGATTGTGGATGGTA CCGCTTCAAGCAGACGTTGCACGAGGATATGGCACGAGCGGACGTTGTCG TGAGCCATGCAGGGGCTGGCTGTGTCATGGAGGCTCTAGGTGAGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18442:204..1300-

>mRNA_Ecto-sp13_S_contig18442.5747.1 ID=mRNA_Ecto-sp13_S_contig18442.5747.1|Name=mRNA_Ecto-sp13_S_contig18442.5747.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18442:204..1300- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAAGCACGTGTTCGTTACGGTGGGCACCACCAAGTTCGACTCTCT
AGTCCAAGCCGTCGACAACGCGGTGGTACTGTCCACCCTGTGCTCAAAAG
GATTCAAGTCGCTTACTGTGCAGATCGGCCACGGACAGCACGTGCCTTCC
TTCCCTGTTGACCAGCAGACAGCCCTCGATTGTGGATGGTACCGCTTCAA
GCAGACGTTGCACGAGGATATGGCACGAGCGGACGTTGTCGTGAGCCATG
CAGGGGCTGGCTGTGTCATGGAGGCTCTAGGTGAGTCC
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