mRNA_Ecto-sp13_S_contig18413.5729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig18413.5729.1
Unique Name	mRNA_Ecto-sp13_S_contig18413.5729.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: D8LP50_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP50_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 9.840e-25
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1

Query:    7 DYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            DYYRL+GVLVDCD  EI++AYRRLMLVHHPDKGG V  SKILNHA+D LQDT+ R +YD
Sbjct:  125 DYYRLLGVLVDCDSSEIQRAYRRLMLVHHPDKGGDVSISKILNHAHDVLQDTICRARYD 183

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A5C3LZV7_9AGAR (J domain-containing protein n=1 Tax=Crucibulum laeve TaxID=68775 RepID=A0A5C3LZV7_9AGAR)

HSP 1 Score: 73.6 bits (179), Expect = 8.520e-14
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1

Query:    7 DYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            DYY+++GV  DC +GE+KKAYRR  L HHPDKGG  E  K++  AN  L D  RR++YD
Sbjct:  448 DYYKILGVARDCTEGEVKKAYRRESLKHHPDKGGDEEKFKLVVEANAVLSDPQRRERYD 506

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A074RQM6_9AGAM (DnaJ family C protein n=3 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A074RQM6_9AGAM)

HSP 1 Score: 72.0 bits (175), Expect = 2.970e-13
Identity = 31/61 (50.82%), Postives = 41/61 (67.21%), Query Frame = 1

Query:    1 STDYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            S DYY+++ +  DC   +IKKAYRR  L+HHPDKGG VE  K++  A   L D  RR++YD
Sbjct:  427 SKDYYKILNIARDCSDADIKKAYRRESLIHHPDKGGDVEKFKLVGEAYQVLSDPQRRRRYD 487

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A0C3C7C8_HEBCY (J domain-containing protein n=1 Tax=Hebeloma cylindrosporum h7 TaxID=686832 RepID=A0A0C3C7C8_HEBCY)

HSP 1 Score: 72.0 bits (175), Expect = 2.970e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1

Query:    7 DYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            DYY+++GV  DC + EIKKAYRR  L+HHPDKGG  E  K++  AN  L D  RR++YD
Sbjct:  455 DYYKILGVSRDCTEVEIKKAYRRESLIHHPDKGGDEEKFKLVVEANAVLSDARRRERYD 513

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A8H3D6W6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3D6W6_9AGAM)

HSP 1 Score: 71.6 bits (174), Expect = 4.050e-13
Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1

Query:    1 STDYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            S DYY+++ +  DC   EIKKAYRR  L+HHPDKGG  E  K++  A   L D  RR++YD
Sbjct:  404 SKDYYKILSIARDCSDAEIKKAYRRESLIHHPDKGGDAEKFKLVGEAYQVLSDPQRRRRYD 464

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A0D7B1X2_9AGAR (TPR-like protein n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7B1X2_9AGAR)

HSP 1 Score: 71.6 bits (174), Expect = 4.060e-13
Identity = 33/61 (54.10%), Postives = 42/61 (68.85%), Query Frame = 1

Query:    1 STDYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            S DYY+++G+  DCD  EIKKAYRR  L HHPDKGG  E  K++  A+  L D  RR++YD
Sbjct:  435 SKDYYKILGLARDCDSSEIKKAYRRESLRHHPDKGGDEEKFKLVVEAHTVLSDPQRRERYD 495

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A8H3C6K6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3C6K6_9AGAM)

HSP 1 Score: 71.2 bits (173), Expect = 5.540e-13
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1

Query:    1 STDYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            S DYY+++ V  DC   EIKKAYRR  L+HHPDKGG  E  K++  A   L D  RR++YD
Sbjct:  426 SKDYYKILSVPRDCSDAEIKKAYRRESLIHHPDKGGDAEKFKLVGEAYQVLSDPQRRRRYD 486

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A8H7FH23_9AGAM (J domain-containing protein n=2 Tax=Athelia sp. TMB TaxID=2748771 RepID=A0A8H7FH23_9AGAM)

HSP 1 Score: 71.2 bits (173), Expect = 5.560e-13
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    7 DYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            DYY+++GV  DC  GEIKKAYRR  L HHPDKGG  E  K++  A+  L D  RR++YD
Sbjct:  483 DYYKILGVPRDCGTGEIKKAYRRESLKHHPDKGGDEEKFKLVVEAHGVLSDPARRERYD 541

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: UPI0004407D3F (DnaJ-domain-containing protein n=1 Tax=Fomitiporia mediterranea (strain MF3/22) TaxID=694068 RepID=UPI0004407D3F)

HSP 1 Score: 70.9 bits (172), Expect = 7.580e-13
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    7 DYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            DYY+++GV  DC  GE+KKAYRR  L HHPDKGG  E  K++  A+  L D  +R++YD
Sbjct:  443 DYYKILGVQRDCSDGELKKAYRRESLKHHPDKGGDEEKFKLVVEAHSVLSDPTKRQRYD 501

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BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Match: A0A8H7XSR3_PSICU (J domain-containing protein n=1 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H7XSR3_PSICU)

HSP 1 Score: 70.9 bits (172), Expect = 7.590e-13
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    7 DYYRLMGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRRKQYD 183
            DYY+++GV   C + EIKKAYRR  L+HHPDKGG  E  K++  AN  L D  RR++YD
Sbjct:  451 DYYKILGVSRGCSEAEIKKAYRRESLIHHPDKGGDEEKFKLVVEANAVLSDPKRRERYD 509

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18413.5729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LP50_ECTSI	9.840e-25	76.27	Heat shock protein 40 like protein/ DnaJ domain co...	[more]
A0A5C3LZV7_9AGAR	8.520e-14	55.93	J domain-containing protein n=1 Tax=Crucibulum lae...	[more]
A0A074RQM6_9AGAM	2.970e-13	50.82	DnaJ family C protein n=3 Tax=Rhizoctonia solani T...	[more]
A0A0C3C7C8_HEBCY	2.970e-13	55.93	J domain-containing protein n=1 Tax=Hebeloma cylin...	[more]
A0A8H3D6W6_9AGAM	4.050e-13	50.82	Hypothetical protein n=1 Tax=Rhizoctonia solani Ta...	[more]
A0A0D7B1X2_9AGAR	4.060e-13	54.10	TPR-like protein n=1 Tax=Cylindrobasidium torrendi...	[more]
A0A8H3C6K6_9AGAM	5.540e-13	52.46	Hypothetical protein n=1 Tax=Rhizoctonia solani Ta...	[more]
A0A8H7FH23_9AGAM	5.560e-13	55.93	J domain-containing protein n=2 Tax=Athelia sp. TM...	[more]
UPI0004407D3F	7.580e-13	52.54	DnaJ-domain-containing protein n=1 Tax=Fomitiporia...	[more]
A0A8H7XSR3_PSICU	7.590e-13	54.24	J domain-containing protein n=1 Tax=Psilocybe cube...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18413	contig	Ecto-sp13_S_contig18413:3029..3211 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Fungi
Stop	0
Start	1
Seed ortholog score	62.0
Seed ortholog evalue	9.8e-08
Seed eggNOG ortholog	208960.XP_007269494.1
Model size	183
KEGG ko	ko:K09527
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0005488,GO:0005515,GO:0006457,GO:0006458,GO:0008150,GO:0009987,GO:0030544,GO:0031072,GO:0051084,GO:0051085,GO:0061077
Exons	1
EggNOG free text desc.	TPR-like protein
EggNOG OGs	228A9@155619,38CD1@33154,3H0SI@355688,3NV1Y@4751,3UY69@5204,COG0484@1,KOG0550@2759
Ec32 ortholog description	Heat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 ortholog	Ec-06_006620.1
Cds size	162
COG Functional cat.	O
Best tax level	Agaricomycetes incertae sedis
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03110

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462946.5811212-UTR-Ecto-sp13_S_contig18413:3028..3049	1681462946.5811212-UTR-Ecto-sp13_S_contig18413:3028..3049	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig18413 3029..3049 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462946.6071165-CDS-Ecto-sp13_S_contig18413:3049..3211	1681462946.6071165-CDS-Ecto-sp13_S_contig18413:3049..3211	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18413 3050..3211 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18413.5729.1	prot_Ecto-sp13_S_contig18413.5729.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig18413 3050..3211 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig18413:3029..3211+
coding sequence from alignment at Ecto-sp13_S_contig18413:3029..3211+

protein sequence of mRNA_Ecto-sp13_S_contig18413.5729.1

>prot_Ecto-sp13_S_contig18413.5729.1 ID=prot_Ecto-sp13_S_contig18413.5729.1|Name=mRNA_Ecto-sp13_S_contig18413.5729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MGVLVDCDQGEIKKAYRRLMLVHHPDKGGCVETSKILNHANDWLQDTVRR
KQYD

mRNA from alignment at Ecto-sp13_S_contig18413:3029..3211+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig18413.5729.1 ID=mRNA_Ecto-sp13_S_contig18413.5729.1|Name=mRNA_Ecto-sp13_S_contig18413.5729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18413:3029..3211+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGACAGATTACTACCGACTTATGGGGGTGCTTGTCGACTGCGACCAGGG
GGAGATCAAGAAGGCGTATCGTCGTCTGATGCTGGTGCACCATCCGGACA
AGGGTGGTTGCGTGGAAACCAGTAAAATCCTAAACCACGCCAATGATTGG
CTGCAAGACACCGTTCGTCGCAAACAGTACGAT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18413:3029..3211+

>mRNA_Ecto-sp13_S_contig18413.5729.1 ID=mRNA_Ecto-sp13_S_contig18413.5729.1|Name=mRNA_Ecto-sp13_S_contig18413.5729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18413:3029..3211+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGTGCTTGTCGACTGCGACCAGGGGGAGATCAAGAAGGCGTATCG
TCGTCTGATGCTGGTGCACCATCCGGACAAGGGTGGTTGCGTGGAAACCA
GTAAAATCCTAAACCACGCCAATGATTGGCTGCAAGACACCGTTCGTCGC
AAACAGTACGAT