prot_Ecto-sp13_S_contig1841.5727.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1841.5727.1
Unique Name	prot_Ecto-sp13_S_contig1841.5727.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	90

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 3.460e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR
Sbjct:  570 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 659

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 3.460e-56
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR
Sbjct:  618 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 707

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A7R9U7G4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7G4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.120e-28
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHE---RPSSEH---RPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++ YQLEG+N+LRQ+WW+ T+VILADEMGLGKTIQ+  F RSIL E   R   E    RP+LV+ PLST +NWERE  +W PELN + F G+  SR
Sbjct:  325 LHDYQLEGVNWLRQAWWNETSVILADEMGLGKTIQSATFSRSILEEQVWRSKQEGHTLRPILVVAPLSTLENWEREFALWAPELNVIVFTGDRSSR 420

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A7C9EPY0_OPUST (DNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPY0_OPUST)

HSP 1 Score: 106 bits (265), Expect = 3.730e-28
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E       P LV+ PLST  NWERE   W P++N V +VG+ ++R
Sbjct:    8 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGIY----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQAR 93

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A1D1YBA8_9ARAE (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBA8_9ARAE)

HSP 1 Score: 115 bits (289), Expect = 3.880e-28
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++PYQLEGLNFLR SW  NT+VILADEMGLGKTIQ++AF+ S+L E PS    P L++ PLST  NWERE   W P++N V + G+ ++R
Sbjct:  287 LHPYQLEGLNFLRYSWSKNTHVILADEMGLGKTIQSIAFLASLLEENPS----PHLIVAPLSTLRNWEREFATWAPQMNVVMYFGSAQAR 372

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A2N9GH18_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GH18_FAGSY)

HSP 1 Score: 113 bits (283), Expect = 2.450e-27
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E PS    P LV+ PLST  NWERE   W P++N V +VG+ ++R
Sbjct:   87 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENPS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQAR 172

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A6P3ZYN5_ZIZJJ (CHD3-type chromatin-remodeling factor PICKLE-like n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZYN5_ZIZJJ)

HSP 1 Score: 112 bits (280), Expect = 3.380e-27
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E  S    P LV+ PLST  NWERE   W P++NCV +VG  ++R
Sbjct:  286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGENIS----PHLVVAPLSTLRNWEREFATWAPQMNCVMYVGTSQAR 371

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A843U219_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U219_COLES)

HSP 1 Score: 110 bits (276), Expect = 5.700e-27
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++PYQLEGLNFLR SW  NT+VILADEMGLGKTIQ++AF+ S+  E  S    P LV+ PLST  NWERE   W P +N V + G+ +SR
Sbjct:  181 LHPYQLEGLNFLRYSWSKNTHVILADEMGLGKTIQSIAFLASLFKENLS----PHLVVAPLSTLRNWEREFATWAPHMNIVMYFGSSQSR 266

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: R0F8D0_9BRAS (Uncharacterized protein n=3 Tax=Capsella rubella TaxID=81985 RepID=R0F8D0_9BRAS)

HSP 1 Score: 112 bits (280), Expect = 6.350e-27
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++ YQLEGLNFL+ SW+  TNVILADEMGLGKTIQT+AF+ ++L E  +    P LV+ PLST  NWERE   W P+LN V + GN ++R
Sbjct:  259 LHEYQLEGLNFLKYSWFQGTNVILADEMGLGKTIQTIAFLATLLEENQA----PHLVVAPLSTLRNWEREFSTWTPQLNVVMYTGNSEAR 344

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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A6P6G962_ZIZJJ (CHD3-type chromatin-remodeling factor PICKLE n=5 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6G962_ZIZJJ)

HSP 1 Score: 112 bits (280), Expect = 6.350e-27
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 0

Query:    1 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 90
            ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E  S    P LV+ PLST  NWERE   W P++NCV +VG  ++R
Sbjct:  286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGENIS----PHLVVAPLSTLRNWEREFATWAPQMNCVMYVGTSQAR 371

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JZW8_9PHAE	3.460e-56	100.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7G7A4_ECTSI	3.460e-56	100.00	Similar to chromodomain helicase DNA binding prote...	[more]
A0A7R9U7G4_9STRA	1.120e-28	58.33	Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi...	[more]
A0A7C9EPY0_OPUST	3.730e-28	56.67	DNA helicase (Fragment) n=1 Tax=Opuntia streptacan...	[more]
A0A1D1YBA8_9ARAE	3.880e-28	58.89	CHD3-type chromatin-remodeling factor PICKLE n=1 T...	[more]
A0A2N9GH18_FAGSY	2.450e-27	58.89	Uncharacterized protein n=1 Tax=Fagus sylvatica Ta...	[more]
A0A6P3ZYN5_ZIZJJ	3.380e-27	58.89	CHD3-type chromatin-remodeling factor PICKLE-like ...	[more]
A0A843U219_COLES	5.700e-27	58.89	Uncharacterized protein n=1 Tax=Colocasia esculent...	[more]
R0F8D0_9BRAS	6.350e-27	57.78	Uncharacterized protein n=3 Tax=Capsella rubella T...	[more]
A0A6P6G962_ZIZJJ	6.350e-27	58.89	CHD3-type chromatin-remodeling factor PICKLE n=5 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 19..86 e-value: 9.8E-17 score: 60.7
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 1..90 e-value: 4.1E-34 score: 119.6
None	No IPR available	PANTHER	PTHR45623	FAMILY NOT NAMED	coord: 1..90
None	No IPR available	PANTHER	PTHR45623:SF17	CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED	coord: 1..90
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 13..90 score: 9.755
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 1..88

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1841	contig	Ecto-sp13_S_contig1841:1258..2043 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1841.5727.1	mRNA_Ecto-sp13_S_contig1841.5727.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1841 1258..2049 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1841.5727.1 ID=prot_Ecto-sp13_S_contig1841.5727.1|Name=mRNA_Ecto-sp13_S_contig1841.5727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSS
EHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000330	SNF2_N
IPR038718	SNF2-like_sf
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase