mRNA_Ecto-sp13_S_contig18405.5724.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18405.5724.1
Unique NamemRNA_Ecto-sp13_S_contig18405.5724.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18405.5724.1 vs. uniprot
Match: A0A6H5KG55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG55_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.130e-65
Identity = 111/126 (88.10%), Postives = 117/126 (92.86%), Query Frame = 1 
Query:    4 GRRGDKGLVGAGRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQDTQGIGPGPTGAGEDGGGGVVGEGIRGCAEW 381
            G +G KG VG+G SSSGTAP DLRQHLSL RTA+RLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGD DVASPP+VLGSRSGFGVQ+TQGI PGPTGA EDGGGGVVGEGI+GCAEW
Sbjct:   30 GSKGGKGAVGSGTSSSGTAPLDLRQHLSLTRTAQRLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDSDVASPPNVLGSRSGFGVQETQGIEPGPTGAREDGGGGVVGEGIKGCAEW 155
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BLAST of mRNA_Ecto-sp13_S_contig18405.5724.1 vs. uniprot
Match: A0A6H5JHW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW4_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 6.370e-63
Identity = 119/129 (92.25%), Postives = 122/129 (94.57%), Query Frame = 1 
Query:    1 QGRRGDKGLVGAGRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQDTQGIGPGPTG--AGEDGGGGVVGEGIRGCAEW 381
            QGRRG KG VG+G SSSGTAPPDLRQHLSLPRTARRLGRRP+HSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQ+TQGI PGPTG  A EDGGGGVVGEGIRGCAEW
Sbjct: 1114 QGRRGGKGAVGSGTSSSGTAPPDLRQHLSLPRTARRLGRRPNHSSGSLVPGEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQETQGIEPGPTGDRAREDGGGGVVGEGIRGCAEW 1242
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BLAST of mRNA_Ecto-sp13_S_contig18405.5724.1 vs. uniprot
Match: D8LH28_ECTSI (UDENN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH28_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.030e-61
Identity = 117/128 (91.41%), Postives = 120/128 (93.75%), Query Frame = 1 
Query:    1 QGRRGDKGLVGAGRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPTEEADSSAGVGGSTQ-GGGGGVAGDLDVASPPDVLGSRSGFGVQDTQGIGPGPTGAGEDGGGGVVGEGIRGCAEW 381
            QGRRG+KG VG GRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEP +EADSSAGVGGST  GGGGGVAGDLDVASPPDVLGSRSGFGVQ+TQGI PGPTGA EDGG GVVGEGIRGCAEW
Sbjct:  341 QGRRGEKGAVGTGRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVPGEPPKEADSSAGVGGSTHAGGGGGVAGDLDVASPPDVLGSRSGFGVQETQGIEPGPTGAREDGGSGVVGEGIRGCAEW 468
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18405.5724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KG55_9PHAE6.130e-6588.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHW4_9PHAE6.370e-6392.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH28_ECTSI1.030e-6191.41UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18405contigEcto-sp13_S_contig18405:783..1634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score221.9
Seed ortholog evalue1.7e-55
Seed eggNOG ortholog2880.D8LH28
Model size382
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG3569@1,KOG3569@2759
Ec32 ortholog descriptionDENN domain
Ec32 orthologEc-06_010990.1
Cds size381
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.1641457-CDS-Ecto-sp13_S_contig18405:782..11051681462946.1641457-CDS-Ecto-sp13_S_contig18405:782..1105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18405 783..1105 -
1681462946.2938473-CDS-Ecto-sp13_S_contig18405:1576..16341681462946.2938473-CDS-Ecto-sp13_S_contig18405:1576..1634Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18405 1577..1634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18405.5724.1prot_Ecto-sp13_S_contig18405.5724.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18405 783..1634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18405.5724.1

>prot_Ecto-sp13_S_contig18405.5724.1 ID=prot_Ecto-sp13_S_contig18405.5724.1|Name=mRNA_Ecto-sp13_S_contig18405.5724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
QGRRGDKGLVGAGRSSSGTAPPDLRQHLSLPRTARRLGRRPSHSSGSLVP
GEPTEEADSSAGVGGSTQGGGGGVAGDLDVASPPDVLGSRSGFGVQDTQG
IGPGPTGAGEDGGGGVVGEGIRGCAEW
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mRNA from alignment at Ecto-sp13_S_contig18405:783..1634-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18405.5724.1 ID=mRNA_Ecto-sp13_S_contig18405.5724.1|Name=mRNA_Ecto-sp13_S_contig18405.5724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18405:783..1634- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGCGAAGGGGGGACAAGGGTTTGGTGGGGGCGGGAAGGTCTTCGAG
CGGCACAGGTGATGTTTGTGGCATTTGGTCTCCTTGGCAGATGCATACTC
TTGGTTATTTTCATATGTACGATGAGAGTGATTTGGATTGGGCGTGTTCA
TGGCCAGAGCGGTTTTGTCAGAAGAGCGGTAGAGCTGCTTCGGCTGCATT
CTAGCGCGTCGATTCGGGTAAAGTGTTACAGCAGTTTCCTCTCACGGTTG
ATATCGGTCTGGTCTGGATGCATGAATAGCGCCAGGGACGAAACGTCTAG
GTCACTGTTTTGTGTTCTCAAGCATGTTCCCGCGTTCGCTGCACGGGTGG
AAGGTCCTGGATACCTATATCTCGTGTTGTAGGAAATTACTCCTTCCGAC
GGAAATACCCGAGGGATCAACCATGGGGGTACGACAGCCCTTCATCGTCC
AACCTTGACCCTTCCTTCCTTCCTTCCTTCCGTTTCCGTCTTTTCTGCCC
AACCCGTTTCCCTTTTTCATGCCAACCAGCCCCTCCCGATCTGCGCCAGC
ACTTGTCTCTCCCTCGCACGGCGAGAAGGTTAGGCCGTCGGCCCAGCCAC
TCGTCAGGCTCTCTCGTCCCAGGAGAGCCCACCGAAGAAGCAGATTCTTC
CGCAGGCGTTGGCGGCAGCACGCAAGGAGGCGGCGGCGGCGTAGCCGGCG
ACTTGGATGTAGCATCTCCCCCTGATGTTCTGGGAAGTCGCTCGGGATTC
GGTGTACAAGATACCCAGGGGATAGGTCCAGGGCCTACAGGGGCGGGAGA
AGACGGTGGTGGTGGGGTTGTCGGGGAAGGAATCAGGGGCTGCGCAGAAT
GG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18405:783..1634-

>mRNA_Ecto-sp13_S_contig18405.5724.1 ID=mRNA_Ecto-sp13_S_contig18405.5724.1|Name=mRNA_Ecto-sp13_S_contig18405.5724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18405:783..1634- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGGCGAAGGGGGGACAAGGGTTTGGTGGGGGCGGGAAGGTCTTCGAG
CGGCACAGCCCCTCCCGATCTGCGCCAGCACTTGTCTCTCCCTCGCACGG
CGAGAAGGTTAGGCCGTCGGCCCAGCCACTCGTCAGGCTCTCTCGTCCCA
GGAGAGCCCACCGAAGAAGCAGATTCTTCCGCAGGCGTTGGCGGCAGCAC
GCAAGGAGGCGGCGGCGGCGTAGCCGGCGACTTGGATGTAGCATCTCCCC
CTGATGTTCTGGGAAGTCGCTCGGGATTCGGTGTACAAGATACCCAGGGG
ATAGGTCCAGGGCCTACAGGGGCGGGAGAAGACGGTGGTGGTGGGGTTGT
CGGGGAAGGAATCAGGGGCTGCGCAGAATGG
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