mRNA_Ecto-sp13_S_contig18384.5706.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18384.5706.1
Unique NamemRNA_Ecto-sp13_S_contig18384.5706.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18384.5706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18384contigEcto-sp13_S_contig18384:2718..3399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size156
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462944.9537492-CDS-Ecto-sp13_S_contig18384:2718..27931681462944.9537492-CDS-Ecto-sp13_S_contig18384:2718..2793Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18384 2719..2793 -
1681462944.9630084-CDS-Ecto-sp13_S_contig18384:3321..33991681462944.9630084-CDS-Ecto-sp13_S_contig18384:3321..3399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18384 3322..3399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18384.5706.1prot_Ecto-sp13_S_contig18384.5706.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18384 2719..3399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18384.5706.1

>prot_Ecto-sp13_S_contig18384.5706.1 ID=prot_Ecto-sp13_S_contig18384.5706.1|Name=mRNA_Ecto-sp13_S_contig18384.5706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
HSGFCVHEVSQCQSTLSVDAEHAAAQIDDVEAAIAGGSGYLGMTDPEALF
R
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mRNA from alignment at Ecto-sp13_S_contig18384:2718..3399-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18384.5706.1 ID=mRNA_Ecto-sp13_S_contig18384.5706.1|Name=mRNA_Ecto-sp13_S_contig18384.5706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=682bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18384:2718..3399- (Ectocarpus species13 EcNAP12_S_4_19m)
CACTCTGGTTTCTGTGTGCACGAAGTTTCGCAATGTCAATCCACACTGAG
TGTCGATGCCGAGCACGCAGCAGCACAGGTATAGCGAGGAGAGAGAGGGA
GATCGCACAAACACGCACGCACGCACGCACGCACGCTCGAATAATTATGT
CGAGCTACGCAGCACAGCAGTACCCACACCCAGGGATCCATGCATGTTTT
TACATCATCTGCACGCCCGTCCTCTCGCCAGAACACTTCAAGTAACGTGA
TGATGATGATGCTCTGGCACCTCCTTCTCTGCGTTGTTTTTTTTCGCTCT
CTTGACCCATTATCTAAAATCGGTGGGTTCGTTGGAGTGAACACCCGCCC
ACCCAAAGCAATCGCCATCAATCATCCATCCCCACGCGTCGGGTTGCTGA
CAGCCCGCATGGTAGAATATACGCACGTTGATTTCTTTGCTGCCCCGGTG
ACGGCACCTCTGCTCTGGTGTCTCATTGCCTTCATTGATTCATTGAGTGA
GGTGCAACAATTTGAAAGTATGTGGCCCTCAGATGAATGGGTTTCACCGT
GTGTTGGCAGGCTTCGCCCGCGTAATTAAACTCCTAAAAGCTCTGTCCCG
GTACAGATTGATGATGTTGAGGCAGCTATTGCCGGGGGCTCCGGGTACCT
CGGAATGACCGACCCCGAAGCCCTGTTCAGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18384:2718..3399-

>mRNA_Ecto-sp13_S_contig18384.5706.1 ID=mRNA_Ecto-sp13_S_contig18384.5706.1|Name=mRNA_Ecto-sp13_S_contig18384.5706.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18384:2718..3399- (Ectocarpus species13 EcNAP12_S_4_19m)
CACTCTGGTTTCTGTGTGCACGAAGTTTCGCAATGTCAATCCACACTGAG
TGTCGATGCCGAGCACGCAGCAGCACAGATTGATGATGTTGAGGCAGCTA
TTGCCGGGGGCTCCGGGTACCTCGGAATGACCGACCCCGAAGCCCTGTTC
AGG
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