mRNA_Ecto-sp13_S_contig18288.5672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18288.5672.1
Unique NamemRNA_Ecto-sp13_S_contig18288.5672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18288.5672.1 vs. uniprot
Match: A0A6H5KYC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYC2_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 7.750e-10
Identity = 48/77 (62.34%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:  418 RMPREGPDGATFMXXXXXXXXXXXXXXXXXXXXXXASANGCRMKHDLVAEAXXXXXXXXXRWLLRDSEEALEKKLSS 648
            RMPREGPDGATFM                      A ANGCRMKHDLVAE XXXXXXXXX  LLR SEE  EKKLSS
Sbjct:   19 RMPREGPDGATFMCPWDEDVTKWAVVGGHLDVLKWALANGCRMKHDLVAEXXXXXXXXXXXXLLRGSEEESEKKLSS 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18288.5672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYC2_9PHAE7.750e-1062.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18288contigEcto-sp13_S_contig18288:103..3236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1085
Hectar predicted targeting categoryother localisation
Exons4
Cds size651
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.9043326-UTR-Ecto-sp13_S_contig18288:102..5341681462941.9043326-UTR-Ecto-sp13_S_contig18288:102..534Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18288 103..534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.9157412-CDS-Ecto-sp13_S_contig18288:534..8701681462941.9157412-CDS-Ecto-sp13_S_contig18288:534..870Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18288 535..870 -
1681462941.9273365-CDS-Ecto-sp13_S_contig18288:1682..17631681462941.9273365-CDS-Ecto-sp13_S_contig18288:1682..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18288 1683..1763 -
1681462941.9430363-CDS-Ecto-sp13_S_contig18288:2435..26301681462941.9430363-CDS-Ecto-sp13_S_contig18288:2435..2630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18288 2436..2630 -
1681462941.953583-CDS-Ecto-sp13_S_contig18288:3197..32361681462941.953583-CDS-Ecto-sp13_S_contig18288:3197..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18288 3198..3236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18288.5672.1prot_Ecto-sp13_S_contig18288.5672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18288 535..3236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18288.5672.1

>prot_Ecto-sp13_S_contig18288.5672.1 ID=prot_Ecto-sp13_S_contig18288.5672.1|Name=mRNA_Ecto-sp13_S_contig18288.5672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
ATGCLWGPTTCSQAALGGHLRVLQWVRENKCKWNHQTTAAAVAGGHLDIL
KWVRSEGCHWKAKSCSQAARWGRFDLLKWLRANGCPWDASTCYEAAIAGR
LDILEWVRGDPEEEKKCPWNKRACHGAARAGHLHILRWLRMPREGPDGAT
FMCPWDEDVTKWAVVGGHLDVLKWASANGCRMKHDLVAEAAVAGHVHVRR
WLLRDSEEALEKKLSS*
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mRNA from alignment at Ecto-sp13_S_contig18288:103..3236-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18288.5672.1 ID=mRNA_Ecto-sp13_S_contig18288.5672.1|Name=mRNA_Ecto-sp13_S_contig18288.5672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3134bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18288:103..3236- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGGGGTGTTTGTGGGGGCCGACGACGTGCTCGCAGGTGTGTTGTGG
AGGGGGGCAGGCTTTTCGTCGTTGCCGTGGATGATGTTCCTTTTTTTTGT
GTGTGTTTTGTGCTGCTTCTGCTGCGTCTTCTTCTCCGCTGACAGGGCTT
GGCCCGAGAAGGGCTAGGGCGCTTTTGTTGTCGTTGCTTGCGTGTTTCGT
TTTTCTTCTTCGTTGTCTTTGTTGTTGTTATGTCGTTGTTGTTCTTCATC
GTTTTCTTTGTGGTTGTGTCTTGTTGCTGTTGTGTTTCGTTTTGTTTCTT
CGTTGTCTTTGCTGATGATGATGTCGTTGTTGTTCTTCATCGTTTTCTTT
ATTGTTGTTGTTGTTACGTTTCGGTTTCCTTCTTGGTTTGTCCTTGTTGC
TGTTGAGTTTCGGTTTGTTTCTTCGTTGTCTTTGGTGTTGATGGTGATGA
TGATGTCATTGTCGTTCTGTTTTGTTTCGCTTCGTCTTGGTGTTCTTCTC
TGCTGACACCGCCTCGCCCTCGAACAGATAGTAGCACCCACAGATCCATG
CATCACGCCAGCTACCCACCCGTCTCACTCGATTCCGCATCACCTCGCGA
ACGCAGGCCGCCTTGGGAGGTCACCTCCGCGTCCTGCAGTGGGTCCGGGA
GAACAAGTGCAAGTGGAACCACCAGACGACCGCAGCTGCGGTGGCGGGAG
GGCACCTCGACATCTTGAAGTGGGTTCGTTCTGAAGGGTGCCACTGGAAA
GCGAAGAGCTGCAGCCAGGCTGCAAGGTGGGGCCGTTTCGACCTCCTCAA
GGTAATACAAGGTAGAGTATATCGCTTTTTCGCGTGTGACTTTTTATTTT
ATTTGTCATTTTCATCGGCATCGGAGGCGCCTGGGTCTAGGCGACAGTCC
GGTCGATGCTGTCCTATGCGCACGCTTAGGTACCAGCCGGGGGGTCCACA
CAGAAGGGTAAGGGTTCCTGCTGCGACCATCGCCTTGCACGTTTGACGCG
AGAGTGGGCAGACGCGTGCCGTTGAAGACAATGGTTGTTATGTTTTCCAT
GACAACGTTTATCGTGCCATAGGCAGACAGGAGCACTGCTATGGAAGCAC
AAAACCGCAAGCAACCAACGAACGAGAAAGCTAATCTCGTGCTTGAGATT
TTTTGACGCTGTTGTAGTGGCCGATGGATGAACCAAGTGTTGACCCCACC
CGCTTGCTTACATTCAGCATCATGTACAGCGATCGGGACGACGGCCACGA
ACCAACGTATGATCGTTGCTTGTGTGGCCTCCAGTGACTCCCAGCCGGAA
ACTTGGTGACTCGTGACTTTTTTCGTTACATGCAGCGTCCATGATTTAGC
CGCATCTTTCACGGTGCGTACGACTCGCTCAGTGCTCGATCTCTCCTGAA
TACTTTCGCTTTGGTATTTCCCCAGCGCTACCTTCCCATTCGATTTTTGT
CGTTCAATGCGTACGTCATGCAGTGGTTGAGGGCAAACGGGTGCCCCTGG
GACGCCAGCACCTGCTACGAGGCCGCAATAGCCGGTCGGCTGGACATCCT
GGAGGTAGGCGACCGACGTGCCGTTACGCGATGTGCTTCTGCAGTAGTAG
AAGGAGAGACCCGGCGGTGCATATGATCTGGGTCTTTGGCGATTCTCTGG
CGCCCGTTAAGATCATGAAAGCTGTGTCGCGGGTTGTATATCTTGGCGGT
TAGAGAATTTACTTTTGGGTCAGGGAAGGCACCGCCGTGGTCCGTGATTC
GCCCCGGATGCCCGCTTCAGAAACGCTTTCCAAAGTAGATAGATCCGCTC
AACACAAATTGTGCACGCGTGAAATTTTTGATGCGGCACAACGTGTGACG
CACGACGCCATGTCATGCTCTCTTTTCCGGTTGCGTGCCCCCACGGGGGT
ACCTACGATCACATGGAGCGCCTTCGGGGGGAGATTCCGGGCATGATGAT
TCCCCCCCTGCGCGAACACAGAAAAAGGAAGGCCACCCATTCGCTCTGTA
GTAGAGATGCTCCTTCGCCCCGGCGCACGATGCGACTAAATATTCCCGGC
AAGCCTCTTTTTTGCCCACAAAATTTTCCCCCCCCCCCCCCCCCCCGGGA
TGTAAAGATTATATTTTAGGATGGATGAAAAGGTAGGGGAAGCATTTCCA
GCCACCTTTGGCAAAGTAGGAAGGAACGACTGACCGGCCATCGGTGATTG
GTCCTGTGGGAACAATACTCCGTCCTCTCGAGGACTCGTGGTCGATGCTA
TAACCGCCAAGGCATGCAAAACATGAGCGCCCCCCCCCCCCCCGCCCCAC
GTCCCTCCTCCTCCGACACACGCCTCTCTAAAAAAAAAACGCATTGAAAT
ACTTGAAAAACACAAGTGGGTGAGGGGCGATCCGGAAGAGGAGAAGAAGT
GTCCGTGGAACAAAAGGGCTTGCCACGGGGCGGCGCGCGCCGGGCACCTC
CACATCCTTCGGTGGCTGAGGATGCCGCGGGAGGGTCCGGACGGGGCGAC
GTTCATGTGCCCGTGGGACGAAGACGTGACCAAGTGGGCGGTTGTCGGGG
GCCACCTGGACGTGCTCAAGTGGGCCTCGGCGAACGGGTGTCGGATGAAG
CACGACCTCGTGGCGGAGGCGGCCGTTGCGGGCCACGTCCACGTGAGGAG
GTGGCTGCTGAGGGACTCGGAGGAGGCGTTAGAGAAAAAGCTGAGCTCGT
GAGCCACCCGCCGGCGGAGAGGGCGTAAGCGACGACTCGAAGGAAGACGC
CACGTACAATACCCCGAGAGTAGATCGAACCACCTGAGAACGATGCGTTT
TGCACGAGATAATGCACCGTAACAACGGCTTTCTTTGTGTGACGGGGTTC
AAGAACGAAGCTGCTTCCGTTGTGCCCCGCGGCAGTATCGCTCCCCGATG
TGAACCTAGCGGTCGTCGTCCCTTGCCAACGCTGTGGCTCGTGTTCTCCG
TCCTTTTTTTGCCGAAACGGTGTGTCGAGAACGAAGCTCATAGCGACATC
CCGTCGTCGGTTTTCTATCGGGCTGGTGGCCGGTGTGGGGCGGGTGAAAC
TTCTGGCACATAAAGATTATTCAGGTTGTTTTGTGCATTCAGGTGGGTGC
CCCCTATGGCGGGGTGAGTGGGCCTGGCACGCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18288:103..3236-

>mRNA_Ecto-sp13_S_contig18288.5672.1 ID=mRNA_Ecto-sp13_S_contig18288.5672.1|Name=mRNA_Ecto-sp13_S_contig18288.5672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18288:103..3236- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGGGGTGTTTGTGGGGGCCGACGACGTGCTCGCAGGCCGCCTTGGG
AGGTCACCTCCGCGTCCTGCAGTGGGTCCGGGAGAACAAGTGCAAGTGGA
ACCACCAGACGACCGCAGCTGCGGTGGCGGGAGGGCACCTCGACATCTTG
AAGTGGGTTCGTTCTGAAGGGTGCCACTGGAAAGCGAAGAGCTGCAGCCA
GGCTGCAAGGTGGGGCCGTTTCGACCTCCTCAAGTGGTTGAGGGCAAACG
GGTGCCCCTGGGACGCCAGCACCTGCTACGAGGCCGCAATAGCCGGTCGG
CTGGACATCCTGGAGTGGGTGAGGGGCGATCCGGAAGAGGAGAAGAAGTG
TCCGTGGAACAAAAGGGCTTGCCACGGGGCGGCGCGCGCCGGGCACCTCC
ACATCCTTCGGTGGCTGAGGATGCCGCGGGAGGGTCCGGACGGGGCGACG
TTCATGTGCCCGTGGGACGAAGACGTGACCAAGTGGGCGGTTGTCGGGGG
CCACCTGGACGTGCTCAAGTGGGCCTCGGCGAACGGGTGTCGGATGAAGC
ACGACCTCGTGGCGGAGGCGGCCGTTGCGGGCCACGTCCACGTGAGGAGG
TGGCTGCTGAGGGACTCGGAGGAGGCGTTAGAGAAAAAGCTGAGCTCGTG
A
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