mRNA_Ecto-sp13_S_contig1826.5661.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1826.5661.1
Unique NamemRNA_Ecto-sp13_S_contig1826.5661.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1826.5661.1 vs. uniprot
Match: D7FU53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU53_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 4.080e-5
Identity = 24/27 (88.89%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:   74 TRLSKDGSSRDGKIPPPKDGVREIASR 154
            TRLS+D SSR GKIPPPKDGVREIASR
Sbjct:   45 TRLSRDESSRGGKIPPPKDGVREIASR 71
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BLAST of mRNA_Ecto-sp13_S_contig1826.5661.1 vs. uniprot
Match: A0A6H5JJU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU8_9PHAE)

HSP 1 Score: 47.0 bits (110), Expect = 6.780e-5
Identity = 23/27 (85.19%), Postives = 25/27 (92.59%), Query Frame = 2 
Query:   74 TRLSKDGSSRDGKIPPPKDGVREIASR 154
            TRL+KDGSSRDGKIPPPK+GVR IA R
Sbjct:   23 TRLTKDGSSRDGKIPPPKEGVRVIALR 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1826.5661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU53_ECTSI4.080e-588.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJU8_9PHAE6.780e-585.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1826contigEcto-sp13_S_contig1826:9329..10360 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462941.0767-CDS-Ecto-sp13_S_contig1826:9328..94061681462941.0767-CDS-Ecto-sp13_S_contig1826:9328..9406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1826 9329..9406 -
1681462941.0867152-CDS-Ecto-sp13_S_contig1826:10282..103601681462941.0867152-CDS-Ecto-sp13_S_contig1826:10282..10360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1826 10283..10360 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1826.5661.1prot_Ecto-sp13_S_contig1826.5661.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1826 9329..10360 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1826.5661.1

>prot_Ecto-sp13_S_contig1826.5661.1 ID=prot_Ecto-sp13_S_contig1826.5661.1|Name=mRNA_Ecto-sp13_S_contig1826.5661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
YYIVVWTETARVSRSSRTRGEKHVHEIEQRRVLAGRKNTATEGRGPGDSL
TT
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mRNA from alignment at Ecto-sp13_S_contig1826:9329..10360-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1826.5661.1 ID=mRNA_Ecto-sp13_S_contig1826.5661.1|Name=mRNA_Ecto-sp13_S_contig1826.5661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1826:9329..10360- (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACATTGTAGTCTGGACGGAAACCGCGAGGGTATCACGTTCCAGCAG
GACGCGAGGAGAAAAACATGTCCACGAGGTGGGCGTGTTGCGAGGGTGTC
GTGTTTTTTTTTCATACGACTCGATACCATGATACTGCAAGTAAGCAGGG
TGGTGCATCTGAGTGTCTCTAGCATGAAACGCACGCAACGAAACGGCGGT
ACAAGAAAACGCCCAAAATGTTGGGGCGTCGCCGATCTGTCGGCCGCGTC
AGTCGCCGTTCTGCCCGGCCCTCGTATCGTGTTTCGCCGGTATGGGTATA
TTCGCTGCCCACCTGCTCCTTTGCCGGGATACCACCGGCGATGGACGTGG
TCATTTTGATACGAAAAGAAAAACTTCTTTGACATATCCCTTTTTGGTAT
GGTGCTGTCTCCAATCAATCCATGAGAACCTCGACGACAGAGTGTGGTGG
GGTGGACTTTTTTTTGTTTTGGGAAAAGGCATAAGAGTTGGCACCGACCG
GAGGCTAATTTACTCGTGGCCGTCGACGTTACTTCTTTTCAGCTACAATA
TCCCGTGATCCTCGTCACCAAAAAAGCGACGGTTGCACACAGTGTGATCA
ACGGGATAAGAGCTCATCGTGACAAGCTCGCATGAGAAAAAAATAATCCA
TGCGCGTTCTACATGTATGCATATCAAAAACATCCTTTGATGGATGGGTG
TTCTATCACCCCCCCCCTTCCGCCCTAGCTAGGTTTTTGCCTGCAGCAAA
TCGTTTGGTTGAACCCATTCATTCGTTCGTTCTTTCGCGCGTGGCTCGAC
CAACGACCTAAAATAGAGCACCTGCTGCCCGCTCCCACCAGGTCCACCGA
TCAAGGTACTAGTCGGAATCGAGCCAGGGAACTATGTGCGTGCCGGTTAT
TATTTCTGAAGTGTCGATGGTCTGTGACGCGGGGTCGGTTTCCCGTCCCA
CCAGATTGAGCAAAGACGGGTCCTCGCGGGACGGAAAAATACCGCCACCG
AAGGACGGGGTCCGGGAGATAGCCTCACGACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1826:9329..10360-

>mRNA_Ecto-sp13_S_contig1826.5661.1 ID=mRNA_Ecto-sp13_S_contig1826.5661.1|Name=mRNA_Ecto-sp13_S_contig1826.5661.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1826:9329..10360- (Ectocarpus species13 EcNAP12_S_4_19m)
TACTACATTGTAGTCTGGACGGAAACCGCGAGGGTATCACGTTCCAGCAG
GACGCGAGGAGAAAAACATGTCCACGAGATTGAGCAAAGACGGGTCCTCG
CGGGACGGAAAAATACCGCCACCGAAGGACGGGGTCCGGGAGATAGCCTC
ACGACC
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