mRNA_Ecto-sp13_S_contig18225.5646.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18225.5646.1
Unique NamemRNA_Ecto-sp13_S_contig18225.5646.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: D7FHT0_ECTSI (Polyketide Synthase III (C-terminal region) Polyketide Synthase III (N-terminal region) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHT0_ECTSI)

HSP 1 Score: 416 bits (1069), Expect = 2.900e-144
Identity = 211/214 (98.60%), Postives = 213/214 (99.53%), Query Frame = 1
Query:    1 MPADHAIQIVLAYCIVPLLSFLVVLRSVRKAKGFYSGDGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFVI 642
            MPADHAIQIVLAYCIVPLLSFLVVLRSVRKAKGFYS DGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDV+LRAIKESG+DVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFVI
Sbjct:    1 MPADHAIQIVLAYCIVPLLSFLVVLRSVRKAKGFYSRDGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVSLRAIKESGVDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFVI 214          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: D8LJ35_ECTSI (Polyketide Synthase III n=3 Tax=Phaeophyceae TaxID=2870 RepID=D8LJ35_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.450e-79
Identity = 133/213 (62.44%), Postives = 164/213 (77.00%), Query Frame = 1
Query:    1 MPADHAIQIVLAYCIVPLLSFLVVLRSVRKAKGFYSGDGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFV 639
            M AD  +QI LA C+V  +S  VVL+SV+K+K            TV+ VIA +A G PQYRCTQ +AL VASK PG +S++P LER+Y N+ IGSR+FAVPDFTP + A+GD   +PADGSY+VPVDVRL KFK+KA PLV DVA RAIKE+G++V  I+KLVVVSSTGF GPGLDC+LIKNLGL RSVDRT++G MGCA A++G R A+D+V
Sbjct:    8 MLADPTVQIALA-CLV--VSLFVVLQSVKKSK---------DEQTVYPVIAGMAIGNPQYRCTQNEALAVASKCPGLESIKPVLERIYGNSRIGSRYFAVPDFTPGRAAKGDPLFYPADGSYQVPVDVRLDKFKEKAVPLVSDVARRAIKEAGLNVEDISKLVVVSSTGFLGPGLDCELIKNLGLTRSVDRTLIGFMGCAAAMNGFRNANDYV 208          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A836CMD8_9STRA (Polyketide synthase III n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD8_9STRA)

HSP 1 Score: 211 bits (537), Expect = 4.130e-63
Identity = 100/175 (57.14%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  115 GERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFV 639
            G +   T++ VI  +ATG P YRCTQ+QAL +A KVPG +SV+P LER+Y N+ I SR+FAVPDFTP   +  D   +PADGS++VPV  RL KF++ A PLVC VA RAI E+G+    + KLVVVSSTGF GPGLDC++IK L + RSVDR+++G MGCA A++G R+A+D+V
Sbjct:   42 GRKREETMYPVIIGLATGNPPYRCTQKQALAIAQKVPGCESVKPVLERIYGNSRIASRYFAVPDFTPDVASPDDPLFYPADGSFQVPVSARLDKFRECAVPLVCSVARRAIMEAGLHPEDLDKLVVVSSTGFLGPGLDCEIIKRLRMKRSVDRSLIGFMGCAAAMNGFRIANDYV 216          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A7S2V1U6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1U6_9STRA)

HSP 1 Score: 204 bits (518), Expect = 4.330e-60
Identity = 102/194 (52.58%), Postives = 137/194 (70.62%), Query Frame = 1
Query:   55 LSFLVVLRSVRKAKGFYSGDGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDF 636
            L+  VV+ ++       S  GE+     + VI  +ATG P Y+CTQ++AL VA KVPG + V+  L R+Y N+ IG+RHFAVPDFTP +   GD+  FPAD S++VPV+ RLAKFK+ A PLV  +A  AI+ + + +S I KLVVVSSTGF GPGLDC+LI  LGL RSVDR+++G MGCA A++G R+A+D+
Sbjct:   56 LAVAVVVAAITFVLMKSSSSGEKKR---YPVIIGMATGNPPYKCTQQEALAVAQKVPGIEKVQAVLPRIYGNSRIGTRHFAVPDFTPDRALPGDEMFFPADHSFKVPVETRLAKFKEVAVPLVTRIAREAIENANVAISDIHKLVVVSSTGFLGPGLDCELINQLGLARSVDRSLIGFMGCAAAMNGFRIANDY 246          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A8J2SDG4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDG4_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.000e-55
Identity = 92/163 (56.44%), Postives = 120/163 (73.62%), Query Frame = 1
Query:  148 IASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDF 636
            I  +ATG P YR +QEQAL+VA   P   S++P L R+Y N+ I  R+ AVPDFTP++R EGD   F  D ++ +PV+ RL KF++ A PLV DV  RA+K++G+  S+I KLVVVSSTGF GPGLDC LIK LGL RSVDR+++G MGCA A++G RVA+D+
Sbjct:   48 IMGMATGNPPYRASQEQALQVAESCPECTSIKPVLARIYGNSRIDYRYMAVPDFTPEQRLEGDDNFFDDDLNFRMPVEKRLDKFREVAVPLVTDVCARALKDAGVQASEIGKLVVVSSTGFLGPGLDCSLIKTLGLERSVDRSLIGFMGCAAAMNGFRVANDY 210          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A7S4D871_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D871_HETAK)

HSP 1 Score: 182 bits (461), Expect = 1.020e-53
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  124 SGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVR-PTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFV 639
            S S  + VI  +ATG P Y+ TQE+A ++A  VP     R P +ER+Y NT I SR+F +PDFTP+K   GD   F  D  +  PV+ RL KF++KA PLV +V   AI ++G+ +  I KLVVVSSTGF GPGLDC+LIK+LGL R VDR+++G MGCA A++G RV +D+V
Sbjct:   33 SQSKRYPVIIGMATGNPAYKVTQEEACKIACSVPALPKDRIPVVERIYGNTRINSRYFCIPDFTPEKALPGDALFFDEDRMFRKPVEQRLDKFREKAVPLVTEVCRNAINQAGVAIDDIHKLVVVSSTGFLGPGLDCELIKSLGLSRGVDRSLIGFMGCAAAMNGFRVCNDYV 205          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A7S3NPW3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPW3_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.780e-52
Identity = 95/216 (43.98%), Postives = 139/216 (64.35%), Query Frame = 1
Query:    1 MPADHAIQIVLAYCIVPLLSFLVVLRSVRKAKGFYSGDGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFVIVS 648
            MP +  + I  A C+V   + ++VL + +  +             V+ VI  +ATG P YR +Q++AL +A   P   S++P L R+Y N+ I  R+ AVPDFTP++  +GD+  FP D S+++PV+ RL  F++KA PLV  V   A++++ I    I KLVVVSSTGF GPGLDC+LIK LGL RSVDR+++G MGCA A++G RVA+D+ + +
Sbjct:    7 MPIEAKVAI--AGCVVLATALILVLTTTKSGQ-----------DKVYPVILGMATGNPPYRVSQQEALAIAESCPDCGSIKPVLARIYGNSRIDYRYMAVPDFTPEQAIKGDEIFFPKDKSFKMPVEKRLDMFREKAIPLVTRVCKAALEDAKIAPELIGKLVVVSSTGFLGPGLDCELIKTLGLSRSVDRSLIGFMGCAAAMNGFRVANDYAVAN 209          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A6V1RDH2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RDH2_HETAK)

HSP 1 Score: 182 bits (461), Expect = 4.750e-52
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  124 SGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVR-PTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFV 639
            S S  + VI  +ATG P Y+ TQE+A ++A  VP     R P +ER+Y NT I SR+F +PDFTP+K   GD   F  D  +  PV+ RL KF++KA PLV +V   AI ++G+ +  I KLVVVSSTGF GPGLDC+LIK+LGL R VDR+++G MGCA A++G RV +D+V
Sbjct:   33 SQSKRYPVIIGMATGNPAYKVTQEEACKIACSVPALPKDRIPVVERIYGNTRINSRYFCIPDFTPEKALPGDALFFDEDRMFRKPVEQRLDKFREKAVPLVTEVCRNAINQAGVAIDDIHKLVVVSSTGFLGPGLDCELIKSLGLSRGVDRSLIGFMGCAAAMNGFRVCNDYV 205          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A7S2WPY4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPY4_9STRA)

HSP 1 Score: 178 bits (451), Expect = 3.050e-50
Identity = 93/200 (46.50%), Postives = 129/200 (64.50%), Query Frame = 1
Query:   52 LLSFLVVLRSVRKAKGFYSGDGERSGSTVHAVIASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFP--ADGS--YEVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDFV 639
            LL+F+VV+ S+    G    D      TV+ +I   ATG P YR +Q++A  +A + P  + V+P ++R+Y N  I  R+ AVPDFTP++   GD+  FP   DGS  Y++PV  RL KF++KA PLV  V  +AI ++GI    + KLVVVSSTGF GPGLDC +I+ +GL R VDR ++G MGCA A++G RV  D+V
Sbjct:   44 LLAFVVVVVSLVLVLGPRQKD---KPETVYPIILGFATGNPPYRVSQQEAANIAEQAPAVQEVKPLIQRIYGNGKISHRYMAVPDFTPEQTLAGDELFFPPTTDGSDYYKIPVQQRLDKFREKAVPLVAKVCNQAIADAGISKEDVGKLVVVSSTGFLGPGLDCHIIQEIGLSRGVDRALIGFMGCAAAMNGFRVGMDYV 240          
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Match: A0A7S2FTW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FTW7_9STRA)

HSP 1 Score: 166 bits (420), Expect = 7.690e-49
Identity = 82/156 (52.56%), Postives = 109/156 (69.87%), Query Frame = 1
Query:  175 QYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAVPDFTPQKRAEGDKALFPA-DGSY-EVPVDVRLAKFKQKAAPLVCDVALRAIKESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCAGALHGLRVASDF 636
            +YR +QEQA+ +A K PG  SVRP L R+Y N+ I  R  AVPDFTP++  E D   +P  +G Y ++PV  RL KF+  A PLV +V  +AIK++G++V  I KLVVVSSTGF GPGLDC +I+ +GL R VDR ++G MGCA A++G RV  D+
Sbjct:    1 KYRVSQEQAVSIAEKAPGIDSVRPVLRRIYGNSKISYRFMAVPDFTPEQVTESDPLFYPTGEGDYYKLPVQTRLDKFRTTAVPLVTEVCKKAIKDAGLNVEDIGKLVVVSSTGFIGPGLDCHIIQEVGLSRGVDRALIGFMGCAAAMNGFRVGMDY 156          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18225.5646.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHT0_ECTSI2.900e-14498.60Polyketide Synthase III (C-terminal region) Polyke... [more]
D8LJ35_ECTSI1.450e-7962.44Polyketide Synthase III n=3 Tax=Phaeophyceae TaxID... [more]
A0A836CMD8_9STRA4.130e-6357.14Polyketide synthase III n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1U6_9STRA4.330e-6052.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SDG4_9STRA3.000e-5556.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4D871_HETAK1.020e-5352.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3NPW3_9STRA1.780e-5243.98Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6V1RDH2_HETAK4.750e-5252.02Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WPY4_9STRA3.050e-5046.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2FTW7_9STRA7.690e-4952.56Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18225contigEcto-sp13_S_contig18225:694..3263 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score255.8
Seed ortholog evalue1.9e-65
Seed eggNOG ortholog2880.D8LJ35
Model size651
KEGG rclassRC00004,RC02726,RC02970
KEGG koko:K00660,ko:K13234,ko:K21384
KEGG ReactionR01613,R06568,R07987,R07988,R07989,R08808,R08810
KEGG Pathwayko00941,ko00945,ko01100,ko01110,ko04712,map00941,map00945,map01100,map01110,map04712
KEGG ModuleM00137
Hectar predicted targeting categorysignal anchor
GOsGO:0000325,GO:0001101,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0006810,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009314,GO:0009411,GO:0009416,GO:0009611,GO:0009628,GO:0009629,GO:0009705,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009812,GO:0009813,GO:0009889,GO:0009914,GO:0009926,GO:0009962,GO:0010033,GO:0010224,GO:0010817,GO:0012505,GO:0016020,GO:0019222,GO:0031090,GO:0031537,GO:0031540,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0060918,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0098588,GO:0098805,GO:1901576,GO:1901700
Exons4
EggNOG free text desc.naringenin-chalcone synthase activity
EggNOG OGs2S4A6@2759,COG3424@1
Ec32 ortholog descriptionType III Polyketide Synthase
Ec32 orthologEc-07_006660.1
EC2.3.1.177,2.3.1.208,2.3.1.217,2.3.1.74
Cds size651
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01008
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462940.030233-CDS-Ecto-sp13_S_contig18225:693..9751681462940.030233-CDS-Ecto-sp13_S_contig18225:693..975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18225 694..975 -
1681462940.041169-CDS-Ecto-sp13_S_contig18225:1527..16981681462940.041169-CDS-Ecto-sp13_S_contig18225:1527..1698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18225 1528..1698 -
1681462940.04954-CDS-Ecto-sp13_S_contig18225:2262..23901681462940.04954-CDS-Ecto-sp13_S_contig18225:2262..2390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18225 2263..2390 -
1681462940.0578215-CDS-Ecto-sp13_S_contig18225:3193..32631681462940.0578215-CDS-Ecto-sp13_S_contig18225:3193..3263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18225 3194..3263 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18225.5646.1prot_Ecto-sp13_S_contig18225.5646.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18225 694..3263 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18225.5646.1

>prot_Ecto-sp13_S_contig18225.5646.1 ID=prot_Ecto-sp13_S_contig18225.5646.1|Name=mRNA_Ecto-sp13_S_contig18225.5646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MPADHAIQIVLAYCIVPLLSFLVVLRSVRKAKGFYSGDGERSGSTVHAVI
ASVATGTPQYRCTQEQALRVASKVPGTKSVRPTLERLYRNTCIGSRHFAV
PDFTPQKRAEGDKALFPADGSYEVPVDVRLAKFKQKAAPLVCDVALRAIK
ESGIDVSQIAKLVVVSSTGFSGPGLDCDLIKNLGLPRSVDRTMVGLMGCA
GALHGLRVASDFVIVS*
back to top

mRNA from alignment at Ecto-sp13_S_contig18225:694..3263-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18225.5646.1 ID=mRNA_Ecto-sp13_S_contig18225.5646.1|Name=mRNA_Ecto-sp13_S_contig18225.5646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18225:694..3263- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCCGACCATGCGATCCAAATAGTCCTGGCGTACTGCATCGTCCC CCTGCTGTCGTTCCTCGTGGGTGAGTTTTGGTGCGGTCTGCCTCGCGAGC CCCGCGAGGTCTCCGCCTTCCTGTATCAAATGTCGAAACGTCATGGCGAC CACACCTCCTCTGTCGCCACGCACCTTTTGTGAAAGGCGTGGGGGAAAAA AGGCAACGGTTTGCCCCGGTGCTTAAGAGACCTGAAGGCCCGTGCTTGGT GACTGTCGTTGCCAGCCGATTGCAAGTGTTGTCGTTGGGATTTCTCAGAT GAACTTTTCGTGTCCCCATCTCTCAAGACGCCGCGCGCACGAACGATCCT CCTGAATGAAGCAAATGATCGTGTAGCTGCGAGCGACCTTTCCCTCAGTG CCGGTCTTCGCACACCAGGGTTGCTTCTTAACTGCTGGGTGTTTTGACTA GCCTTCAGCGAGCACGGTGTGCAGACAGAAGTAGCAGCCACGGCTATTAC TGTGAGAGAGTTGGGTCGAAAAGCGCTGAAATTGGCGGGAGATTGAAGTA TGTAAACAAAGGCTGCCGTTGTCATTGTCACTCCTGTTGACACGTACACA TGCTGTTGTTGGCAGACAATCATTATTGTGTTCATGTTGGTTCCATGACG CTGCAGCCTGGCCACGTTCGACCTGCGTAGGCTTGAGGTGTTGCTCTATG TACTTCGGTTGGAAGTCCTCAACAGGGAGGCTTACATGTGTGTGGCAGCA TCAGCGCTGCTGCTGGTTTTACGCAAGGCTTGAGTCGTGGGGCTCCGTGG AACGCAGGTTTACCTCGGAAATAACGAAATAACCCTTGCCGCGCATCTCT TCCCATCCCACCCCGCCGCACAGTGCTGCGATCAGTGAGAAAGGCGAAGG GCTTCTATTCCGGGGACGGAGAGAGATCGGGCTCTACCGTACACGCCGTC ATCGCTTCCGTTGCTACCGGCACCCCGCAATATCGCTGCACACAGGAGCA GGTGCACTGATAAATTATTTTGTAAATTTCGCAACGATTGGGAAATGCTT GTAGAGAGGTTTCCTGACTTCGGAGAGGACTCAAGCTGCCTAGATGCGTT CCTGCAGTGCTTTTGAAAGACGTTGATAGTAGCATGGGGCGTGCTGGTTG GAATGGGTACTGCTGCAGACGCAATTGGAAAATGTGTTTGATGTGGAACA GAGACTACTGCTGTAAATCGCGAGCAGTTGCGGCAGAAGAGAAAGGCAAG ATTTCCATTCCCTGATCCGTGTAACGTGTAGACCCGGTGTAGTCAGCATT GCGGTGTGCGACCGATGTTGCCGAACTTTACATATACTATTTCCAACAGA TTTTTTTGCCGTATCGATGCCACAAACATGGCCTTCATACACGCACGGCG ATCAAAGCGCACCGCTCCTTGAAAGATAGCATGCGGCTTTCACGATGGGC AAGTACTGCGGTGCCAAGACGTGTCCTGCAGAGTGGCAGGCCGTCAACCA CAGGGGGATCACTCCCGACTCAAAACCAACCAACCGTTCGTGCGAAAAAC CCAATCACCCCACAGGCACTTCGCGTAGCTTCGAAGGTACCCGGGACCAA GAGCGTGAGACCAACGCTCGAGCGCCTGTACCGCAACACGTGCATCGGCA GCCGACACTTTGCGGTGCCGGACTTCACCCCGCAGAAGCGGGCCGAGGGA GACAAGGCGCTGTTCCCGGCTGACGGGAGCTATGAGGTGTGGGGTGAACG GTTGCTGCTGCTGCTGTCGTCGTTGTTTTAGTTCGTGGTTCATTGACGGT GCTGCGGCTGGTGCTCCCGCTGTCTGTCGTCACAGCTGCTGCTGCTGCTG CTTTTGTGGTTGTTTTAGTTCGTGGTTTGTTGACAGTACTGCTGCTGGTG CTGCCGCTGTCTGTTGTCACAGCCTCTGCTTCTGCTGCGTATGTGGTTGT GTTGTGCACGGTTCTTCTGCTGCCGTTGCCGCTGGTGTAGTTGTTGCAGT TTGGTAGGGGGGGGGTGTTGTTTTGGCGGTCCTGCTTCGGCTGCTGCTGC CGCTGGTTGTGGCCGTTTCCCTTGCTCCGTGATGAAGAGTACTACACACA CGCACGAAACACGTCGTCAGATGTACCTCCCACACCGACAGCATCTGGAT TCGCTTGTATGGCGCCCCTCTACACATCTCTCTCACACGGCCTTAATACA GACCACCATCACCCTCATCCCCTGCCGCCATTGCCGTGCCGCCGTCATCC ATCCAACAACCACCGCAACCGCTGCACACCTCGAAAAGGTGCCCGTGGAT GTCCGCCTCGCCAAGTTTAAGCAAAAGGCGGCCCCGCTCGTGTGCGACGT GGCGCTTCGGGCCATCAAAGAGTCAGGCATCGATGTCTCCCAGATAGCGA AGCTAGTGGTCGTATCGTCGACGGGTTTTTCCGGCCCTGGCCTAGATTGC GACCTCATCAAGAACCTGGGTCTGCCGCGATCCGTGGACCGGACCATGGT GGGCCTGATGGGATGCGCGGGCGCGTTGCACGGCCTGCGTGTGGCGAGCG ATTTCGTGATTGTGAGTTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18225:694..3263-

>mRNA_Ecto-sp13_S_contig18225.5646.1 ID=mRNA_Ecto-sp13_S_contig18225.5646.1|Name=mRNA_Ecto-sp13_S_contig18225.5646.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18225:694..3263- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGCCGACCATGCGATCCAAATAGTCCTGGCGTACTGCATCGTCCC
CCTGCTGTCGTTCCTCGTGGTGCTGCGATCAGTGAGAAAGGCGAAGGGCT
TCTATTCCGGGGACGGAGAGAGATCGGGCTCTACCGTACACGCCGTCATC
GCTTCCGTTGCTACCGGCACCCCGCAATATCGCTGCACACAGGAGCAGGC
ACTTCGCGTAGCTTCGAAGGTACCCGGGACCAAGAGCGTGAGACCAACGC
TCGAGCGCCTGTACCGCAACACGTGCATCGGCAGCCGACACTTTGCGGTG
CCGGACTTCACCCCGCAGAAGCGGGCCGAGGGAGACAAGGCGCTGTTCCC
GGCTGACGGGAGCTATGAGGTGCCCGTGGATGTCCGCCTCGCCAAGTTTA
AGCAAAAGGCGGCCCCGCTCGTGTGCGACGTGGCGCTTCGGGCCATCAAA
GAGTCAGGCATCGATGTCTCCCAGATAGCGAAGCTAGTGGTCGTATCGTC
GACGGGTTTTTCCGGCCCTGGCCTAGATTGCGACCTCATCAAGAACCTGG
GTCTGCCGCGATCCGTGGACCGGACCATGGTGGGCCTGATGGGATGCGCG
GGCGCGTTGCACGGCCTGCGTGTGGCGAGCGATTTCGTGATTGTGAGTTG
A
back to top