mRNA_Ecto-sp13_S_contig18219.5641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18219.5641.1
Unique NamemRNA_Ecto-sp13_S_contig18219.5641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18219.5641.1 vs. uniprot
Match: D8LEY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY8_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.300e-48
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 1 
Query:    4 GLACVVKMYDFREGQVKLNDTTEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV 243
            GLACV+KMYDFREGQVKLNDT EFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV
Sbjct:  197 GLACVIKMYDFREGQVKLNDTAEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV 276
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18219.5641.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 7.520e-47
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 1 
Query:    1 AGLACVVKMYDFREGQVKLNDTTEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV 243
            AGLACVVKMYDFREGQ+KLND TEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV
Sbjct:  278 AGLACVVKMYDFREGQIKLNDMTEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV 358
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18219.5641.1 vs. uniprot
Match: UPI000C1D676A (mini-chromosome maintenance complex-binding protein n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D676A)

HSP 1 Score: 52.0 bits (123), Expect = 8.870e-6
Identity = 30/77 (38.96%), Postives = 40/77 (51.95%), Query Frame = 1 
Query:   13 CVVKMYDFREGQVKLNDTTEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV 243
            C+VK+YDF E  +KLND  EFVG+  +D  +T  ++D D      G            ED    +PP S  PRLHC+
Sbjct:  226 CLVKIYDFPETDLKLNDVFEFVGIFTFDPDLTVEKDDSDELAHSFG------------EDVLNHMPP-SKVPRLHCL 289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18219.5641.1 vs. uniprot
Match: A0A103Y971_CYNCS (Mini-chromosome maintenance complex-binding protein n=2 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y971_CYNCS)

HSP 1 Score: 51.2 bits (121), Expect = 1.650e-5
Identity = 34/78 (43.59%), Postives = 42/78 (53.85%), Query Frame = 1 
Query:   10 ACVVKMYDFREGQVKLNDTTEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNPFQGLEDFSRKVPPPSLAPRLHCV 243
            AC+VK+YD  E  +KLND  EF+GVL YD          +V   +GG      N F   ED S  +PP S  PRLHC+
Sbjct:  219 ACLVKIYDSPESDLKLNDVFEFIGVLTYDT---------EVKFDKGGDN-ELANSFP--EDESVNLPP-SKVPRLHCL 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18219.5641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LEY8_ECTSI1.300e-4897.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW72_9PHAE7.520e-4797.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C1D676A8.870e-638.96mini-chromosome maintenance complex-binding protei... [more]
A0A103Y971_CYNCS1.650e-543.59Mini-chromosome maintenance complex-binding protei... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18219contigEcto-sp13_S_contig18219:313..567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score154.8
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D8LEY8
Preferred nameMCMBP
Model size255
KEGG koko:K06997
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0098813,GO:1901360,GO:1901576,GO:1902969,GO:1903047
Exons1
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsKOG2545@1,KOG2545@2759
Cds size231
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.5045085-CDS-Ecto-sp13_S_contig18219:312..5431681462939.5045085-CDS-Ecto-sp13_S_contig18219:312..543Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18219 313..543 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.5190046-UTR-Ecto-sp13_S_contig18219:543..5671681462939.5190046-UTR-Ecto-sp13_S_contig18219:543..567Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18219 544..567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18219.5641.1prot_Ecto-sp13_S_contig18219.5641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18219 313..543 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18219.5641.1

>prot_Ecto-sp13_S_contig18219.5641.1 ID=prot_Ecto-sp13_S_contig18219.5641.1|Name=mRNA_Ecto-sp13_S_contig18219.5641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MYDFREGQVKLNDTTEFVGVLGYDQAVTPPQEDEDVPMGEGGAGGATGNP
FQGLEDFSRKVPPPSLAPRLHCVCEWR
back to top

mRNA from alignment at Ecto-sp13_S_contig18219:313..567-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18219.5641.1 ID=mRNA_Ecto-sp13_S_contig18219.5641.1|Name=mRNA_Ecto-sp13_S_contig18219.5641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18219:313..567- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGGCTCGCGTGCGTGGTCAAGATGTATGATTTCCGGGAGGGGCAGGT
CAAGCTCAACGACACGACCGAGTTTGTCGGGGTGCTGGGGTACGACCAGG
CGGTGACCCCGCCCCAGGAGGACGAAGACGTGCCAATGGGAGAGGGAGGG
GCAGGGGGGGCGACGGGGAATCCGTTTCAGGGCCTCGAGGACTTCTCGAG
AAAGGTTCCTCCGCCCAGTCTTGCGCCACGGCTCCACTGTGTGTGTGAGT
GGCGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18219:313..567-

>mRNA_Ecto-sp13_S_contig18219.5641.1 ID=mRNA_Ecto-sp13_S_contig18219.5641.1|Name=mRNA_Ecto-sp13_S_contig18219.5641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18219:313..567- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTATGATTTCCGGGAGGGGCAGGTCAAGCTCAACGACACGACCGAGTT
TGTCGGGGTGCTGGGGTACGACCAGGCGGTGACCCCGCCCCAGGAGGACG
AAGACGTGCCAATGGGAGAGGGAGGGGCAGGGGGGGCGACGGGGAATCCG
TTTCAGGGCCTCGAGGACTTCTCGAGAAAGGTTCCTCCGCCCAGTCTTGC
GCCACGGCTCCACTGTGTGTGTGAGTGGCGT
back to top