mRNA_Ecto-sp13_S_contig18210.5639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18210.5639.1
Unique NamemRNA_Ecto-sp13_S_contig18210.5639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18210.5639.1 vs. uniprot
Match: D7FJE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE8_ECTSI)

HSP 1 Score: 863 bits (2231), Expect = 1.130e-305
Identity = 595/682 (87.24%), Postives = 609/682 (89.30%), Query Frame = 1 
Query:    1 VAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLAADGPHENGAAAXXXXGG-GSAPSRSVRGFKRRSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSDRAFFSNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTKRTLEETPDKRGASPKTGGASESPEATLSGREGGEGVGGDLIGIDGLEXXXXXXXXXXXXXXXXXXXXXTRVAGETRMEE-GEASLPDEEASPATPGAVQKALGEGGIGAGDSADEQRAGSPVPSSEAALTSSPSPETRVSGSSPDSAEKTVLVSLPPTEAGSLEGEYDGAGVVPDPDDGAVVPPSEGEPAVGAGGSVEGGGGRGEQPADDVTAKSSSDGVTAADSAPGDVSSDVKTGQEEEXXXXNSEKPALDAVVEPSVASGVQQEGEQDGGVVLGPGIKRGSLDPSQEEVGDIGRGEPAVPEADEEGATPSEAAGVRQQGGATVALSSKSAAGTSSGSDADDSTGGLKEATSEMEFSREMGRRGAGGGPSPLVVEAEVE--VVSSGEDTQSVEISDHGPENGIXXXXXXXLQKGPLGSS-SEQGGGGSVVVANGPGAKEETQVPVFEEIEL 2031
            VAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLA +G +ENGAAAXXXX G GSAPSRSVRGFKR+STGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSDRAFF NERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTK TLEETPDKRGASPKTGG SE PEATLSG EGGEGVGGDLIGIDGLEXXXXXXXXXXXXXXXXXXXXX       RMEE G+ASLPDEE SPA  G VQKALGEGGI A DSADEQRAGSP+PSSEA LTSSPSPE RVSGSSPDSAEKT L+SLPPTE GSLEG  DGAGVVPDP        SE EPAVGAGGSVEGGG +GEQ ADDVTAKSSSDG  AAD APGDVS  V+TGQEEEXXXX SEKPALD VVEPSVASGV+QEGEQDGGVVLG  ++RGSLDPSQEEV DIGRGEPAVPEADEEGA PSEAAGVRQQGGATV LSS SAAGTSSGS ADDSTGGLKE T+E EFSREMGR  AGGGPSPLVVEAE     VS+G  T SV ISDHGPEN  XXXXXXX  KGPLGSS SEQGGGGSVVVANGPGA+EE QVPVFEEIEL
Sbjct:  181 VAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLAPNGANENGAAAXXXXAGRGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSDRAFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALGVGNTKHTLEETPDKRGASPKTGGVSEPPEATLSGGEGGEGVGGDLIGIDGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXARMEEEGDASLPDEETSPAALGVVQKALGEGGIDAEDSADEQRAGSPLPSSEAVLTSSPSPEARVSGSSPDSAEKTALISLPPTEEGSLEGGDDGAGVVPDPXXXXXXXXSEEEPAVGAGGSVEGGGDQGEQAADDVTAKSSSDGEPAADGAPGDVSDHVRTGQEEEXXXXKSEKPALDVVVEPSVASGVRQEGEQDGGVVLGAVMERGSLDPSQEEVSDIGRGEPAVPEADEEGAMPSEAAGVRQQGGATVTLSSTSAAGTSSGSGADDSTGGLKEPTAETEFSREMGRGSAGGGPSPLVVEAEAXXXAVSAGVGT-SVVISDHGPENXXXXXXXXXXXKGPLGSSTSEQGGGGSVVVANGPGAEEEAQVPVFEEIEL 861
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18210.5639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJE8_ECTSI1.130e-30587.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18210contigEcto-sp13_S_contig18210:638..3047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2034
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006080.1
Cds size2025
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.3983843-UTR-Ecto-sp13_S_contig18210:637..6461681462939.3983843-UTR-Ecto-sp13_S_contig18210:637..646Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18210 638..646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462939.4073129-CDS-Ecto-sp13_S_contig18210:646..12671681462939.4073129-CDS-Ecto-sp13_S_contig18210:646..1267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18210 647..1267 +
1681462939.415513-CDS-Ecto-sp13_S_contig18210:1643..30471681462939.415513-CDS-Ecto-sp13_S_contig18210:1643..3047Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18210 1644..3047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18210.5639.1prot_Ecto-sp13_S_contig18210.5639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18210 647..3047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18210.5639.1

>prot_Ecto-sp13_S_contig18210.5639.1 ID=prot_Ecto-sp13_S_contig18210.5639.1|Name=mRNA_Ecto-sp13_S_contig18210.5639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=675bp
MDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSPSSPRPDSSRSPSP
ENGHRRTQTQRVRDLLSSIDGLVQESEEALTGMPSLAADGPHENGAAAAA
ATGGGSAPSRSVRGFKRRSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSH
SDRAFFSNERDWRGSRFGSATTPPPELAAARRASVVPAAPGGEEEDDPAS
ADMLLAEVDWLIAGTNAALGVGNTKRTLEETPDKRGASPKTGGASESPEA
TLSGREGGEGVGGDLIGIDGLEITPDKRELSPKRHDAPESADATRVAGET
RMEEGEASLPDEEASPATPGAVQKALGEGGIGAGDSADEQRAGSPVPSSE
AALTSSPSPETRVSGSSPDSAEKTVLVSLPPTEAGSLEGEYDGAGVVPDP
DDGAVVPPSEGEPAVGAGGSVEGGGGRGEQPADDVTAKSSSDGVTAADSA
PGDVSSDVKTGQEEEEEEENSEKPALDAVVEPSVASGVQQEGEQDGGVVL
GPGIKRGSLDPSQEEVGDIGRGEPAVPEADEEGATPSEAAGVRQQGGATV
ALSSKSAAGTSSGSDADDSTGGLKEATSEMEFSREMGRRGAGGGPSPLVV
EAEVEVVSSGEDTQSVEISDHGPENGIENGGQNGLQKGPLGSSSEQGGGG
SVVVANGPGAKEETQVPVFEEIEL*
back to top

mRNA from alignment at Ecto-sp13_S_contig18210:638..3047+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18210.5639.1 ID=mRNA_Ecto-sp13_S_contig18210.5639.1|Name=mRNA_Ecto-sp13_S_contig18210.5639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2410bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18210:638..3047+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTGGCAGCGATGGACAGCGACTGCGGTTCGCCCGGCTCGGCAGCGGGAGG
GCCTGGTTTGCAGATAGCCGGCGGCAACCGCAGCGCTTCCGCTAACCTTG
ACGAGAAAAGCCCTTCCCCGAGCAGCCCGAGACCGGACTCGTCTCGATCG
CCATCGCCGGAGAACGGCCACCGCCGCACCCAGACGCAGCGAGTGCGCGA
CCTCCTGAGCAGCATCGACGGCCTCGTGCAGGAGTCGGAGGAGGCCCTCA
CCGGCATGCCCTCGTTAGCCGCGGACGGCCCCCATGAGAACGGCGCGGCG
GCGGCGGCGGCGACGGGGGGGGGCAGCGCTCCTTCCCGCAGCGTCCGAGG
GTTCAAGCGCCGGAGCACCGGTGCCGTGGACTCGCGAAGCGGCCCGTCGT
CGCGGCTGAGCCTGCGCACGCCCCCGCCCCTAGATGGGGAAGGGGACGGG
AGTTCCCACTCTGACAGGGCGTTTTTCTCGAACGAGCGCGACTGGCGCGG
CAGCCGGTTTGGGTCGGCGACGACGCCTCCGCCAGAGCTGGCCGCCGCCC
GCCGAGCGTCCGTCGTGCCTGCTGCTCCGGGCGGGGAGGAGGAAGACGAC
CCGGCCTCGGCCGACATGCTTCTCGCTGAGGTGAGGGAGGGCCTGTTGTT
TGCTTGTTTCCCGTTGTCGGCTGGCCCGTACGTGTGTGTCGTTGTGCTTC
GGTCGATGCCGAGTCTGGCCGATGCCGGCGATGCGCCCGGTGCCACGATG
CCTAGAGGAACGTTTCTCCGCATGTATATGTGCATAAACTCGCCTCACAC
ACGATCTTTCAACTTTTGGTGTGTGTTTGAATTTTCATAAAGCATCGGCC
GCGCTAACCGGCTGATCGAAAACGCCGTGTTTTTGCTCGTGCGTGTGTAT
TTTTCTGTGAATTCAAATGCGTGCACTGTATTTTTCTGTGAATCCAAATG
TGTGCGCTATTAATCTAAACTCGACGCTTCGGGTCTTGACGACGAAATGA
AAACAGGTGGACTGGCTCATCGCGGGGACGAATGCTGCCCTCGGCGTCGG
GAACACGAAACGCACCCTCGAGGAGACCCCCGACAAGCGCGGGGCCTCTC
CAAAGACGGGAGGTGCCTCCGAGTCGCCGGAGGCGACGCTGTCGGGGAGA
GAAGGGGGGGAGGGCGTGGGTGGAGACCTCATCGGCATCGACGGCCTTGA
GATCACCCCAGACAAACGCGAACTGTCTCCCAAGAGGCACGACGCCCCTG
AGTCTGCGGATGCGACGCGTGTGGCTGGGGAGACGCGGATGGAGGAGGGA
GAAGCCAGCCTGCCCGACGAAGAGGCGAGCCCCGCTACGCCCGGGGCCGT
GCAGAAGGCGCTAGGGGAGGGCGGCATCGGTGCGGGAGACTCCGCCGACG
AGCAGCGGGCGGGATCGCCGGTGCCATCCTCCGAAGCGGCGCTGACCTCC
TCTCCGTCGCCGGAGACTAGGGTGAGTGGCTCGTCGCCAGACTCGGCGGA
GAAGACGGTGTTGGTGTCGTTGCCGCCTACCGAAGCAGGGAGTCTCGAAG
GCGAATACGATGGTGCAGGCGTCGTGCCGGACCCGGATGATGGTGCGGTT
GTGCCGCCTTCGGAAGGGGAGCCCGCCGTTGGCGCAGGGGGCTCCGTTGA
GGGCGGGGGGGGCCGAGGGGAACAGCCTGCCGATGATGTGACGGCTAAGT
CTAGTAGTGATGGCGTGACTGCTGCGGACAGCGCCCCGGGGGATGTGTCT
AGCGATGTGAAGACGGGGCAGGAAGAGGAGGAGGAGGAGGAGAATAGCGA
GAAGCCCGCCCTTGACGCAGTCGTGGAGCCTAGCGTCGCGAGCGGCGTTC
AGCAAGAGGGAGAGCAAGACGGCGGCGTTGTGTTGGGACCGGGCATCAAG
CGGGGGAGTCTAGACCCGAGCCAGGAAGAAGTGGGCGATATCGGGCGGGG
TGAGCCTGCTGTGCCGGAAGCCGACGAGGAAGGAGCGACGCCATCAGAGG
CAGCCGGAGTTCGTCAGCAGGGCGGCGCAACCGTTGCCCTTTCGTCCAAG
AGCGCAGCAGGGACCTCGAGCGGTTCCGACGCGGACGACTCCACGGGTGG
TTTGAAGGAGGCTACCTCTGAAATGGAATTTTCTCGGGAGATGGGGAGAC
GTGGTGCAGGGGGTGGTCCGTCACCGCTTGTGGTCGAAGCCGAGGTAGAG
GTAGTGTCTTCGGGGGAGGATACCCAGTCCGTCGAAATTTCCGACCACGG
ACCAGAGAACGGTATTGAGAACGGCGGTCAGAACGGTCTCCAGAAAGGTC
CTCTAGGGAGCAGCAGCGAGCAGGGGGGTGGTGGCAGCGTTGTGGTCGCG
AACGGGCCTGGCGCGAAGGAGGAGACGCAGGTTCCGGTTTTCGAGGAGAT
CGAGCTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18210:638..3047+

>mRNA_Ecto-sp13_S_contig18210.5639.1 ID=mRNA_Ecto-sp13_S_contig18210.5639.1|Name=mRNA_Ecto-sp13_S_contig18210.5639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2025bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18210:638..3047+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAGCGACTGCGGTTCGCCCGGCTCGGCAGCGGGAGGGCCTGGTTT
GCAGATAGCCGGCGGCAACCGCAGCGCTTCCGCTAACCTTGACGAGAAAA
GCCCTTCCCCGAGCAGCCCGAGACCGGACTCGTCTCGATCGCCATCGCCG
GAGAACGGCCACCGCCGCACCCAGACGCAGCGAGTGCGCGACCTCCTGAG
CAGCATCGACGGCCTCGTGCAGGAGTCGGAGGAGGCCCTCACCGGCATGC
CCTCGTTAGCCGCGGACGGCCCCCATGAGAACGGCGCGGCGGCGGCGGCG
GCGACGGGGGGGGGCAGCGCTCCTTCCCGCAGCGTCCGAGGGTTCAAGCG
CCGGAGCACCGGTGCCGTGGACTCGCGAAGCGGCCCGTCGTCGCGGCTGA
GCCTGCGCACGCCCCCGCCCCTAGATGGGGAAGGGGACGGGAGTTCCCAC
TCTGACAGGGCGTTTTTCTCGAACGAGCGCGACTGGCGCGGCAGCCGGTT
TGGGTCGGCGACGACGCCTCCGCCAGAGCTGGCCGCCGCCCGCCGAGCGT
CCGTCGTGCCTGCTGCTCCGGGCGGGGAGGAGGAAGACGACCCGGCCTCG
GCCGACATGCTTCTCGCTGAGGTGGACTGGCTCATCGCGGGGACGAATGC
TGCCCTCGGCGTCGGGAACACGAAACGCACCCTCGAGGAGACCCCCGACA
AGCGCGGGGCCTCTCCAAAGACGGGAGGTGCCTCCGAGTCGCCGGAGGCG
ACGCTGTCGGGGAGAGAAGGGGGGGAGGGCGTGGGTGGAGACCTCATCGG
CATCGACGGCCTTGAGATCACCCCAGACAAACGCGAACTGTCTCCCAAGA
GGCACGACGCCCCTGAGTCTGCGGATGCGACGCGTGTGGCTGGGGAGACG
CGGATGGAGGAGGGAGAAGCCAGCCTGCCCGACGAAGAGGCGAGCCCCGC
TACGCCCGGGGCCGTGCAGAAGGCGCTAGGGGAGGGCGGCATCGGTGCGG
GAGACTCCGCCGACGAGCAGCGGGCGGGATCGCCGGTGCCATCCTCCGAA
GCGGCGCTGACCTCCTCTCCGTCGCCGGAGACTAGGGTGAGTGGCTCGTC
GCCAGACTCGGCGGAGAAGACGGTGTTGGTGTCGTTGCCGCCTACCGAAG
CAGGGAGTCTCGAAGGCGAATACGATGGTGCAGGCGTCGTGCCGGACCCG
GATGATGGTGCGGTTGTGCCGCCTTCGGAAGGGGAGCCCGCCGTTGGCGC
AGGGGGCTCCGTTGAGGGCGGGGGGGGCCGAGGGGAACAGCCTGCCGATG
ATGTGACGGCTAAGTCTAGTAGTGATGGCGTGACTGCTGCGGACAGCGCC
CCGGGGGATGTGTCTAGCGATGTGAAGACGGGGCAGGAAGAGGAGGAGGA
GGAGGAGAATAGCGAGAAGCCCGCCCTTGACGCAGTCGTGGAGCCTAGCG
TCGCGAGCGGCGTTCAGCAAGAGGGAGAGCAAGACGGCGGCGTTGTGTTG
GGACCGGGCATCAAGCGGGGGAGTCTAGACCCGAGCCAGGAAGAAGTGGG
CGATATCGGGCGGGGTGAGCCTGCTGTGCCGGAAGCCGACGAGGAAGGAG
CGACGCCATCAGAGGCAGCCGGAGTTCGTCAGCAGGGCGGCGCAACCGTT
GCCCTTTCGTCCAAGAGCGCAGCAGGGACCTCGAGCGGTTCCGACGCGGA
CGACTCCACGGGTGGTTTGAAGGAGGCTACCTCTGAAATGGAATTTTCTC
GGGAGATGGGGAGACGTGGTGCAGGGGGTGGTCCGTCACCGCTTGTGGTC
GAAGCCGAGGTAGAGGTAGTGTCTTCGGGGGAGGATACCCAGTCCGTCGA
AATTTCCGACCACGGACCAGAGAACGGTATTGAGAACGGCGGTCAGAACG
GTCTCCAGAAAGGTCCTCTAGGGAGCAGCAGCGAGCAGGGGGGTGGTGGC
AGCGTTGTGGTCGCGAACGGGCCTGGCGCGAAGGAGGAGACGCAGGTTCC
GGTTTTCGAGGAGATCGAGCTGTAG
back to top