mRNA_Ecto-sp13_S_contig18177.5621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18177.5621.1
Unique NamemRNA_Ecto-sp13_S_contig18177.5621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18177.5621.1 vs. uniprot
Match: D7G361_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G361_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 1.340e-151
Identity = 324/350 (92.57%), Postives = 326/350 (93.14%), Query Frame = 3 
Query:   39 MTTSTGRPRPFLNGVFRTACNYCVSSKRGCSGGEPCDQCEKRGKPCIYAQRRKSGPRSRPASGRSSKGRSRTXXXXXXXXXXXXXXXXXXXXX---VESPSPVIARSPPSPAASGLAGEDRVGVVSGSWDGGEAVAEVMEVERRRGSIGEDAWERERRRLGFTTHDXXXXXXXXXXXXXXXXXXXXXXXRKPPALVIPRPHRTDPGSTANPLLVRSSPAPP------SGRLEVPLPPRSAHVLSPPQEGAAGSFGXXXXXXXXXXXXXXXXXXXXX-----PSPFFTRQAPSSQPSDEGNNKRTRVSSLTPHAPRTSLASPPPLSLTPSSSCSALPPRGCISSVLASRCT 1046
            MTTSTGRPRPFLNGVFRTACNYCVSSKRGCSGGEPCDQCEKRGKPCIYAQRRKSGPRSRPASGRSSKGRS  XXXXXXXXXXXXXXXXXXXXX   VESPSPVIARSPPSPAASGLAGEDRVGVV+GSWDGGEA AEV EVERRRGSIGEDAWERERRRLGFTTHDXXXXXXXXXXXXXXXXXXXXXXX KPP LVIPRPHRTDPGSTANPLLVRSSPAPP      SGRLEVP+PPRSAHVLSPPQEG AGSFG XXXXXXXXXXXXXXXXXXXX     PSPFFTRQAPSSQPSDEGNNKRTRVSSLTP  PRTSLASPPPLSLTPSSSCSALPPRGCISSVLASRCT
Sbjct:    1 MTTSTGRPRPFLNGVFRTACNYCVSSKRGCSGGEPCDQCEKRGKPCIYAQRRKSGPRSRPASGRSSKGRSXXXXXXXXXXXXXXXXXXXXXXXXXXVESPSPVIARSPPSPAASGLAGEDRVGVVAGSWDGGEAAAEVTEVERRRGSIGEDAWERERRRLGFTTHDXXXXXXXXXXXXXXXXXXXXXXX-KPPDLVIPRPHRTDPGSTANPLLVRSSPAPPXXXXXXSGRLEVPMPPRSAHVLSPPQEGTAGSFGSXXXXXXXXXXXXXXXXXXXXXXXXTPSPFFTRQAPSSQPSDEGNNKRTRVSSLTPPTPRTSLASPPPLSLTPSSSCSALPPRGCISSVLASRCT 349
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18177.5621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G361_ECTSI1.340e-15192.57Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18177contigEcto-sp13_S_contig18177:499..2354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1124
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionZn(2)-C6 fungal-type DNA-binding domain
Ec32 orthologEc-03_004620.1
Cds size1077
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.2874064-UTR-Ecto-sp13_S_contig18177:498..5361681462938.2874064-UTR-Ecto-sp13_S_contig18177:498..536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18177 499..536 +
1681462938.3220491-UTR-Ecto-sp13_S_contig18177:2345..23541681462938.3220491-UTR-Ecto-sp13_S_contig18177:2345..2354Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18177 2346..2354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462938.2965791-CDS-Ecto-sp13_S_contig18177:536..6101681462938.2965791-CDS-Ecto-sp13_S_contig18177:536..610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18177 537..610 +
1681462938.305234-CDS-Ecto-sp13_S_contig18177:930..18621681462938.305234-CDS-Ecto-sp13_S_contig18177:930..1862Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18177 931..1862 +
1681462938.313485-CDS-Ecto-sp13_S_contig18177:2274..23451681462938.313485-CDS-Ecto-sp13_S_contig18177:2274..2345Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18177 2275..2345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18177.5621.1prot_Ecto-sp13_S_contig18177.5621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18177 537..2345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18177.5621.1

>prot_Ecto-sp13_S_contig18177.5621.1 ID=prot_Ecto-sp13_S_contig18177.5621.1|Name=mRNA_Ecto-sp13_S_contig18177.5621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=359bp
MTTSTGRPRPFLNGVFRTACNYCVSSKRGCSGGEPCDQCEKRGKPCIYAQ
RRKSGPRSRPASGRSSKGRSRTKARRESRAAAAAAAAVAAAAPVESPSPV
IARSPPSPAASGLAGEDRVGVVSGSWDGGEAVAEVMEVERRRGSIGEDAW
ERERRRLGFTTHDDNNHHLQQEQQQQSLFSQPAGGKRKPPALVIPRPHRT
DPGSTANPLLVRSSPAPPSGRLEVPLPPRSAHVLSPPQEGAAGSFGGSSS
SSSSSSSASSSFSSSSTPSPFFTRQAPSSQPSDEGNNKRTRVSSLTPHAP
RTSLASPPPLSLTPSSSCSALPPRGCISSVLASRCTPPPPPLLCHAWVRV
TPGKTSTT*
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mRNA from alignment at Ecto-sp13_S_contig18177:499..2354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18177.5621.1 ID=mRNA_Ecto-sp13_S_contig18177.5621.1|Name=mRNA_Ecto-sp13_S_contig18177.5621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18177:499..2354+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGCGAATCGTAGGCTCATCAGTCAGTGAGTGAGCGATGACCACCTCC
ACGGGAAGGCCGAGGCCATTCCTGAACGGCGTCTTCAGAACAGCCTGCAA
CTACTGCGTAAGGTGTGTGTTTGGATGCAGGCTTCACCCACCCCCCAGTA
GTTCTTCATGAGTAGGTTGACCTTCCTTACTGCCGCGCAATGGCATTTAG
ATGTAACTGTTGTGGTGGACTCTTTTTCTCTTTTCTTTTGCGGGAATTCA
TCACCATGTTCGATCGAATCAAGTGATGCCCGCCCAAAATAATAACATCA
GTATCGTTTTCGTTTTATCTCTACTTTCCTTTTCGTTATTGTCGGACGTA
CCCCAAGCTGATGTACCCGCCCAAAAACCGAATGTCGTCTCACTGATTTC
CCTTCCTTACCTCCTTTCCTCCCGACGAGCAGTAGCAAGCGGGGTTGCAG
CGGCGGGGAACCGTGCGACCAGTGCGAGAAGAGGGGCAAGCCCTGCATCT
ACGCGCAGCGCCGCAAGAGCGGACCCCGCAGCCGTCCGGCCTCCGGCCGC
TCGAGTAAGGGCCGTTCCCGCACCAAGGCAAGACGAGAGAGCCGCGCCGC
CGCCGCCGCCGCTGCCGCCGTTGCTGCCGCCGCTCCGGTTGAGTCTCCGT
CGCCGGTCATTGCGAGATCTCCTCCGTCCCCTGCTGCTTCCGGGCTTGCA
GGAGAGGACAGGGTGGGTGTGGTTTCTGGGTCTTGGGACGGCGGCGAGGC
GGTAGCGGAGGTAATGGAGGTCGAGCGGCGCCGCGGCAGCATCGGCGAGG
ACGCCTGGGAGAGAGAGCGGAGGAGGCTGGGCTTCACCACCCACGACGAC
AACAACCACCACCTACAGCAGGAGCAACAGCAGCAATCGCTCTTCTCTCA
GCCCGCCGGGGGGAAGCGGAAGCCCCCCGCACTCGTCATCCCGCGGCCCC
ACCGGACTGACCCCGGTTCGACCGCGAATCCCCTCCTCGTGAGGTCATCG
CCGGCGCCCCCGTCGGGAAGACTCGAGGTGCCGCTGCCGCCTCGGTCGGC
CCACGTTCTGTCGCCGCCGCAGGAGGGAGCGGCAGGGAGCTTCGGGGGCT
CCTCCTCCTCGTCCTCCTCTTCCTCTTCCGCCTCGAGCTCTTTCTCTTCC
TCCTCGACCCCCTCCCCGTTCTTCACCAGGCAAGCGCCGTCTTCTCAGCC
GAGCGACGAGGGGAACAACAAGCGGACGAGAGTGTCGTCGCTCACCCCGC
ACGCCCCGCGGACTTCCCTCGCGTCCCCCCCGCCGCTCTCCCTGACGCCC
TCGTCCTCCTGCTCGGCCCTGCCTCCCCGAGGCTGTATCTCGTCCGTCCT
GGCTTCGAGGTGTACGTCCGTAGACGGTGGCGGTGGCGGTGGCGGCGGCG
GCGTCGGGAGCTTGGGTCCCGTTCGCCGCGGGCGATCGGCTGCTGCCGCA
TCTTCTTCCGCGGGAGGTTGTTCTCAACCGTCGTCCGGAACGGCCCCGGA
GTCGCAGTCGCTTCCGTCGTCGTCTTCGAGCCGCGGCGGCGGTTCCGGTC
AACTCGTCTTCGGTGCCAGGCGGGCGCCAGCGCAGCCGGCCTCGGAGAGG
GGTGGGTGGGTGAAGGCTGAAGCTGCGGCGCCCCACCCGGTGTTGCATAG
CGTGTCTCCGGGCTCGGCCATGTCGCTGCCGGAGTCGAGCGCCGGCGAAG
GGTCTGCGGGGATGGAGGCGTCGTCATCCTACGCCAGGGTGGAGTCGTCA
TGGGCCGCCACCGCTGCCGCCGCCGCCGCCACCGCCCCCGCCGCTGCTTT
GCCACGCCTGGGTGCGGGTTACGCCGGGGAAGACTTCGACGACATGAACA
CGTTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18177:499..2354+

>mRNA_Ecto-sp13_S_contig18177.5621.1 ID=mRNA_Ecto-sp13_S_contig18177.5621.1|Name=mRNA_Ecto-sp13_S_contig18177.5621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1077bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18177:499..2354+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACCTCCACGGGAAGGCCGAGGCCATTCCTGAACGGCGTCTTCAG
AACAGCCTGCAACTACTGCGTAAGTAGCAAGCGGGGTTGCAGCGGCGGGG
AACCGTGCGACCAGTGCGAGAAGAGGGGCAAGCCCTGCATCTACGCGCAG
CGCCGCAAGAGCGGACCCCGCAGCCGTCCGGCCTCCGGCCGCTCGAGTAA
GGGCCGTTCCCGCACCAAGGCAAGACGAGAGAGCCGCGCCGCCGCCGCCG
CCGCTGCCGCCGTTGCTGCCGCCGCTCCGGTTGAGTCTCCGTCGCCGGTC
ATTGCGAGATCTCCTCCGTCCCCTGCTGCTTCCGGGCTTGCAGGAGAGGA
CAGGGTGGGTGTGGTTTCTGGGTCTTGGGACGGCGGCGAGGCGGTAGCGG
AGGTAATGGAGGTCGAGCGGCGCCGCGGCAGCATCGGCGAGGACGCCTGG
GAGAGAGAGCGGAGGAGGCTGGGCTTCACCACCCACGACGACAACAACCA
CCACCTACAGCAGGAGCAACAGCAGCAATCGCTCTTCTCTCAGCCCGCCG
GGGGGAAGCGGAAGCCCCCCGCACTCGTCATCCCGCGGCCCCACCGGACT
GACCCCGGTTCGACCGCGAATCCCCTCCTCGTGAGGTCATCGCCGGCGCC
CCCGTCGGGAAGACTCGAGGTGCCGCTGCCGCCTCGGTCGGCCCACGTTC
TGTCGCCGCCGCAGGAGGGAGCGGCAGGGAGCTTCGGGGGCTCCTCCTCC
TCGTCCTCCTCTTCCTCTTCCGCCTCGAGCTCTTTCTCTTCCTCCTCGAC
CCCCTCCCCGTTCTTCACCAGGCAAGCGCCGTCTTCTCAGCCGAGCGACG
AGGGGAACAACAAGCGGACGAGAGTGTCGTCGCTCACCCCGCACGCCCCG
CGGACTTCCCTCGCGTCCCCCCCGCCGCTCTCCCTGACGCCCTCGTCCTC
CTGCTCGGCCCTGCCTCCCCGAGGCTGTATCTCGTCCGTCCTGGCTTCGA
GGTGTACGCCACCGCCCCCGCCGCTGCTTTGCCACGCCTGGGTGCGGGTT
ACGCCGGGGAAGACTTCGACGACATGA
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