mRNA_Ecto-sp13_S_contig18146.5600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18146.5600.1
Unique NamemRNA_Ecto-sp13_S_contig18146.5600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: D8LNM2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM2_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.520e-39
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAIEK 228
            VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAIEK
Sbjct:  674 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAIEK 749          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A6H5K3V2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V2_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 3.370e-38
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAIEK 228
            VVELVMEVMLLRQNSIEHRLKVLFT+GDENGDGVLSFEEFNRI+LRAAPHFSERRTLRMFREA TAGKEGTYAIEK
Sbjct:  609 VVELVMEVMLLRQNSIEHRLKVLFTDGDENGDGVLSFEEFNRIVLRAAPHFSERRTLRMFREAQTAGKEGTYAIEK 684          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A835Z527_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z527_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.030e-25
Identity = 50/76 (65.79%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAIEK 228
            V+++VMEV+ ++Q++I  RLK LF EGD+NGDGVLSFEEFN I+   AP FSERR LRMFREALT+G E ++AIEK
Sbjct:   99 VLQVVMEVLTMQQSAITARLKRLFVEGDDNGDGVLSFEEFNAIVTNVAPDFSERRILRMFREALTSGAESSFAIEK 174          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A7S3XVU4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVU4_HETAK)

HSP 1 Score: 95.9 bits (237), Expect = 2.570e-21
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAIEK 228
            V+ELVMEVM L++N+I   L  LF EGD+NGDGVLSF EF  I+ +AAP FSERR LRMFREALT+G E +++I K
Sbjct:  188 VLELVMEVMALQENNIAANLGKLFVEGDDNGDGVLSFPEFAAIVRKAAPRFSERRILRMFREALTSGPESSFSISK 263          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A1V9YGZ9_9STRA (EF-hand domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGZ9_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.240e-15
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAI 222
            V+E++M+V+L+R  SIE  L  LF  GD N D VLSF EF  II   APHF+ERR LRMFREAL  G++ +YA+
Sbjct:  663 VLEILMDVLLMRTKSIELELAELFRAGDVNNDQVLSFTEFAAIIKPRAPHFNERRLLRMFREALLLGQDQSYAV 736          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: T0SA94_SAPDV (EF-hand domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0SA94_SAPDV)

HSP 1 Score: 77.8 bits (190), Expect = 5.860e-15
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAI 222
            V+EL+++V+L+R   IE  L  LF  GD N D VLSF EF  I+   APHF+ERR LRMFREAL  G++ +YAI
Sbjct:  586 VLELIVDVLLMRTKGIEMELTELFDSGDVNHDHVLSFAEFCAILQPRAPHFNERRLLRMFREALVLGQDPSYAI 659          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A1V9Y710_9STRA (EF-hand domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y710_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.210e-14
Identity = 41/72 (56.94%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    7 ELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAI 222
            EL++EV+L+R  +IE+ L  LF  GD N D VLSF EF  I+   AP F+ERR LRMFREALT G   +YAI
Sbjct:  675 ELIIEVLLMRTKTIENELHELFLTGDINHDKVLSFAEFCTILKPRAPGFNERRLLRMFREALTLGSTQSYAI 746          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A067D528_SAPPC (EF-hand domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D528_SAPPC)

HSP 1 Score: 73.9 bits (180), Expect = 1.330e-13
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAI 222
            V+EL+++V+L+R   IE  L  LF  GD N D VLSF EF  I+   AP F+ERR LRMFREAL  G++ +YAI
Sbjct:  621 VLELIVDVLLMRTKGIEIELTELFESGDVNHDHVLSFPEFCAILKPRAPEFNERRLLRMFREALLLGQDPSYAI 694          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: A0A485LSS2_9STRA (Aste57867_25289 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LSS2_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.690e-13
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAI 222
            V+EL+M+V+ LR   IE  L  LF  GD N D  LSF EF  ++    PHF+ERR LRMFREA+T G + T+ I
Sbjct:  723 VLELIMDVLQLRNKEIEDELIALFHAGDVNHDQGLSFNEFAALLQPRVPHFNERRILRMFREAVTLGHDETFKI 796          
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Match: G4Z3D7_PHYSP (EF-hand domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z3D7_PHYSP)

HSP 1 Score: 66.6 bits (161), Expect = 4.990e-11
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 VVELVMEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERRTLRMFREALTAGKEGTYAI 222
            V++L+M+ +  R++ I+  L  LF  GD N D VL+ +EF  II +  PHFS+RR LRMFREAL  G + ++A+
Sbjct:  646 VLKLLMDALEQRRDGIKRDLTALFDAGDVNHDCVLTLDEFGAIIRKRKPHFSDRRILRMFREALMGGVDQSFAL 719          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18146.5600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM2_ECTSI1.520e-39100.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5K3V2_9PHAE3.370e-3896.05EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z527_9STRA6.030e-2565.79EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3XVU4_HETAK2.570e-2164.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9YGZ9_9STRA1.240e-1556.76EF-hand domain-containing protein n=1 Tax=Achlya h... [more]
T0SA94_SAPDV5.860e-1555.41EF-hand domain-containing protein n=1 Tax=Saproleg... [more]
A0A1V9Y710_9STRA5.210e-1456.94EF-hand domain-containing protein n=1 Tax=Thrausto... [more]
A0A067D528_SAPPC1.330e-1354.05EF-hand domain-containing protein n=1 Tax=Saproleg... [more]
A0A485LSS2_9STRA8.690e-1351.35Aste57867_25289 protein n=1 Tax=Aphanomyces stella... [more]
G4Z3D7_PHYSP4.990e-1145.95EF-hand domain-containing protein n=1 Tax=Phytopht... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18146contigEcto-sp13_S_contig18146:2244..3240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score142.5
Seed ortholog evalue7.8e-32
Seed eggNOG ortholog2880.D8LNM2
Model size237
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CEF5@1,2QR05@2759
Cds size222
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.6229627-UTR-Ecto-sp13_S_contig18146:2243..22581681462936.6229627-UTR-Ecto-sp13_S_contig18146:2243..2258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18146 2244..2258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462936.6323888-CDS-Ecto-sp13_S_contig18146:2258..23801681462936.6323888-CDS-Ecto-sp13_S_contig18146:2258..2380Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18146 2259..2380 +
1681462936.640607-CDS-Ecto-sp13_S_contig18146:3140..32401681462936.640607-CDS-Ecto-sp13_S_contig18146:3140..3240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18146 3141..3240 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18146.5600.1prot_Ecto-sp13_S_contig18146.5600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18146 2259..3240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18146.5600.1

>prot_Ecto-sp13_S_contig18146.5600.1 ID=prot_Ecto-sp13_S_contig18146.5600.1|Name=mRNA_Ecto-sp13_S_contig18146.5600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MEVMLLRQNSIEHRLKVLFTEGDENGDGVLSFEEFNRIILRAAPHFSERR
TLRMFREALTAGKEGTYAIEKVG*
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mRNA from alignment at Ecto-sp13_S_contig18146:2244..3240+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18146.5600.1 ID=mRNA_Ecto-sp13_S_contig18146.5600.1|Name=mRNA_Ecto-sp13_S_contig18146.5600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18146:2244..3240+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGTTGAGCTGGTAATGGAGGTGATGCTGTTAAGGCAGAACTCTATCGA GCACCGGCTGAAGGTGCTCTTCACAGAGGGGGATGAGAACGGGGACGGTG TACTGAGCTTCGAAGAGTTCAACCGGATAATCCTCAGGTACGACGGCTGG ATACCACCTTCCACCGCTGATCCCGTCATCAACAATTTCGTTTGCTTTCT TTTCCTTTGGTTGGGCTGGAGCGCTCAACTGACGCATGCATAACACTGCT GATGCCGAGATCGACTTGTTTCAGGTTTCTTTCTACTGTTCTTGCTAGAG TTTCCTCCTGATGCTCACCACGACAGATTCTGCGACCACTTGTCGTGCTG ACCTTCACACCAACCCAAACGTTATCCCTAGCAAAGACGCAGACTATGCA TCCGACTACTTTTCCGACGGATTTGTTGACGGGGCGGAAATTGTAGAGGC GGTTCCGTTTGGGTGGTACCTCTTGGCCGGCGTTGAAACTTTCTGGTTGT GTTGAAAAATCTATCAATCCCGATGTACTTTCTATAAAATATTAGGTGAC CCTGTACTCCGTGCCTATTGGGCCTTGCAGCCCGTCCTTCGTCGGGGTAC TGAACAGCTGTAGCCGGTATTGGACACGGCGAGCAGGGCCAAGATGCTAC CCAAACCACTGTGACAAAATGCCGTCGTAACATCTGCTTGGTGTTATCGG CTCTCGTCCTTGAACCCCGATGATACTCGAATAGCGACTCTTCTTGCGTG CAGATAATTTTGTATGTCTCCCTCCTTCTACTTTGACGGCTGTCTGTGCC GTCTTCTGCTATGCACGTCTCTACGCCTTCCGTTGTACCTGATTATTCGG TTGTCTCGATCCTGGGACGAACTATCGTTTCCCTCTTCTCTTGATAGGGC CGCTCCCCACTTCAGCGAGAGGCGAACACTGCGCATGTTCCGGGAAGCGC TAACTGCCGGGAAAGAAGGCACTTACGCTATCGAGAAGGTAGGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18146:2244..3240+

>mRNA_Ecto-sp13_S_contig18146.5600.1 ID=mRNA_Ecto-sp13_S_contig18146.5600.1|Name=mRNA_Ecto-sp13_S_contig18146.5600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18146:2244..3240+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTGATGCTGTTAAGGCAGAACTCTATCGAGCACCGGCTGAAGGT
GCTCTTCACAGAGGGGGATGAGAACGGGGACGGTGTACTGAGCTTCGAAG
AGTTCAACCGGATAATCCTCAGGGCCGCTCCCCACTTCAGCGAGAGGCGA
ACACTGCGCATGTTCCGGGAAGCGCTAACTGCCGGGAAAGAAGGCACTTA
CGCTATCGAGAAGGTAGGATGA
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