mRNA_Ecto-sp13_S_contig18105.5575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18105.5575.1
Unique NamemRNA_Ecto-sp13_S_contig18105.5575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: D8LRN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.170e-22
Identity = 49/51 (96.08%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKITVAPPRKASKKRGIISKSNHVTHT 154
            VTKTSLASVSPGESFQTFLGIDPAVKI VAPPRK SKKRGIISKSNHVTHT
Sbjct:  426 VTKTSLASVSPGESFQTFLGIDPAVKIIVAPPRKTSKKRGIISKSNHVTHT 476
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: D8LRN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN8_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.220e-22
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKITVAPPRKASKKRGIISKSNHVTHT 154
            VTKTSL SVSPGESFQTFLGIDPAVKITVAPPRK SKKRGI SKSNHVTHT
Sbjct:  458 VTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHT 508
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: D8LRN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.240e-22
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKITVAPPRKASKKRGIISKSNHVTHT 154
            VTKTSL SVSPGESFQTFLGIDPAVKITVAPPRK SKKRGI SKSNHVTHT
Sbjct:  500 VTKTSLTSVSPGESFQTFLGIDPAVKITVAPPRKTSKKRGIFSKSNHVTHT 550
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.050e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKITVAPPRKASKKRGIISKSNHVTHT 154
            VTKTSL+SVSPGESFQTFLGIDPAVKITVAPPRK S KRGIISKSNHVTHT
Sbjct:  469 VTKTSLSSVSPGESFQTFLGIDPAVKITVAPPRKTSTKRGIISKSNHVTHT 519
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: A0A6H5KAH2_9PHAE (DUF4139 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAH2_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.120e-19
Identity = 44/51 (86.27%), Postives = 45/51 (88.24%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKITVAPPRKASKKRGIISKSNHVTHT 154
            +TKTSL SV PGESFQTFLGIDPAVKITV P RK SKKRGI SKSNHVTHT
Sbjct:  336 ITKTSLTSVCPGESFQTFLGIDPAVKITVGPLRKTSKKRGIFSKSNHVTHT 386
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.770e-16
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKITVAPPRKASKKRGIISKSNHVTH 151
            V KTSL SVSPGESFQTFLGIDPAVK+ VAPPRK SK++G+  K +HV H
Sbjct:  587 VAKTSLTSVSPGESFQTFLGIDPAVKVKVAPPRKTSKQKGLFGKVDHVAH 636
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BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Match: A0A836CA38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA38_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.970e-9
Identity = 32/76 (42.11%), Postives = 42/76 (55.26%), Query Frame = 2 
Query:    2 VTKTSLASVSPGESFQTFLGIDPAVKIT--------------------------VAPPRKASKKRGIISKSNHVTH 151
            VTKTSL +VSPGE F  FLG+DPAVK++                           APPRK +++RG++SK+  VTH
Sbjct:  676 VTKTSLRTVSPGEGFDVFLGVDPAVKVSGSTDARARVDAGXXXXXXXXXXXXXXYAPPRKTTRRRGLLSKTQLVTH 751
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18105.5575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LRN6_ECTSI1.170e-2296.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN8_ECTSI2.220e-2294.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN5_ECTSI2.240e-2294.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI3.050e-2294.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAH2_9PHAE1.120e-1986.27DUF4139 domain-containing protein n=1 Tax=Ectocarp... [more]
D8LRM9_ECTSI3.770e-1674.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CA38_9STRA7.970e-942.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18105contigEcto-sp13_S_contig18105:58..421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462935.066788-CDS-Ecto-sp13_S_contig18105:57..1361681462935.066788-CDS-Ecto-sp13_S_contig18105:57..136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18105 58..136 +
1681462935.077601-CDS-Ecto-sp13_S_contig18105:343..4201681462935.077601-CDS-Ecto-sp13_S_contig18105:343..420Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18105 344..420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18105.5575.1prot_Ecto-sp13_S_contig18105.5575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18105 58..420 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18105.5575.1

>prot_Ecto-sp13_S_contig18105.5575.1 ID=prot_Ecto-sp13_S_contig18105.5575.1|Name=mRNA_Ecto-sp13_S_contig18105.5575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=52bp
RHQDQPRLRLSRRVLPDLLRHRPRRQDHGGTSTQGQQEARHHLQVQPRHT
HP
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mRNA from alignment at Ecto-sp13_S_contig18105:58..421+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18105.5575.1 ID=mRNA_Ecto-sp13_S_contig18105.5575.1|Name=mRNA_Ecto-sp13_S_contig18105.5575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18105:58..421+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCACCAAGACCAGCCTCGCCTCCGTCTCTCCCGGAGAGTCCTTCCAGA
CCTTCTTAGGCATCGACCCCGCCGTCAAGGTGCGACCGAATGAAACGGAG
ACGCCCCAAGTGTCGAAGAACACTTCGCTTGTCTGTAGCTCCGTGAGAAT
GTGTGTGGCCGTCGGCTTTGAGCCTCAACTCTACTCTTTCTTGCGCCTTG
ACATTTGTTGTTTCGCTCTTATATCCGCTTGACCACCTGTCCTAACGCAC
TTTCGCCTTCCTGGTTGTTGGTCTGAAATACCACAGATCACGGTGGCACC
TCCACGCAAGGCCAGCAAGAAGCGCGGCATCATCTCCAAGTCCAACCACG
TCACACACACCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18105:58..421+

>mRNA_Ecto-sp13_S_contig18105.5575.1 ID=mRNA_Ecto-sp13_S_contig18105.5575.1|Name=mRNA_Ecto-sp13_S_contig18105.5575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18105:58..421+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGTCACCAAGACCAGCCTCGCCTCCGTCTCTCCCGGAGAGTCCTTCCAGA
CCTTCTTAGGCATCGACCCCGCCGTCAAGATCACGGTGGCACCTCCACGC
AAGGCCAGCAAGAAGCGCGGCATCATCTCCAAGTCCAACCACGTCACACA
CACCCA
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