mRNA_Ecto-sp13_S_contig1810.5573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: D7G5S2_ECTSI (Transmembrane protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S2_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 1.330e-143 Identity = 216/260 (83.08%), Postives = 226/260 (86.92%), Query Frame = 1
Query: 1 MAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIVKESQQAQSATVRGVERKDGAENGEWLLHDGAPWDGRAVSSRSRCQSITKGNVPYAI-------SRARRNVCCGRAPDVLHFFQVPGC 759
MAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSST +G DDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALS VTGA+GLAWGWRLST+LD +ALTMRHHVRGTVVVVIIALGMVAYQVENN+SQLMGIRK EYLRVLSNIVKESQQAQSATV G E +DGAE GEWLLHDGAPWDGRAVSS+SRCQS+TKG VP I + R C VL+ Q GC
Sbjct: 30 MAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTDSGGDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSIVTGAVGLAWGWRLSTHLDGLALTMRHHVRGTVVVVIIALGMVAYQVENNDSQLMGIRKHEYLRVLSNIVKESQQAQSATVGGAESEDGAEGGEWLLHDGAPWDGRAVSSKSRCQSMTKGKVPCTIELEGTYAAGELRTFCIFSRFRVLYVAQGDGC 289
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A7S2Y483_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y483_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.900e-25 Identity = 75/182 (41.21%), Postives = 97/182 (53.30%), Query Frame = 1
Query: 10 AALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAG----------WWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQL--MGIRKQEYLRVLSNIV 519
A +LR +L RPF YD++LRP TDR+E S+G PSLETHMA VV G WW PLV L + + FVG TRVY+ +RFVHQVALS VTG LGL G L + ++H+ VV +V +EN ++ +G+ + EY+RVLSNIV
Sbjct: 85 AQVLRFMLGCERPFNYDRQLRPTTDRHEFSYGFPSLETHMAVVVFGFICVKCWTWMWW--------------------PLVPLF-VAFTVFVGMTRVYSYARFVHQVALSWVTGGLGLGLGILAWAQLAAWKFRYQNHIYWLAVVGAAFGVVVGLWIENGDTSRFGLGVPRSEYVRVLSNIV 245
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A7S3XSM3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM3_HETAK) HSP 1 Score: 106 bits (264), Expect = 1.020e-23 Identity = 73/175 (41.71%), Postives = 95/175 (54.29%), Query Frame = 1
Query: 10 AALLRLVLSAPRPFMYDQRLRPL--TDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIVKES 528
A +LR L RPF +D RLR TD+Y S+G PSLETHMA VV G A G + + L IAFVGFTRVYAC+RF+HQVALS TGALGLA + L + + R H + + + L +V E+NE +G+ ++EY RVL I++ S
Sbjct: 88 AQVLRWTLGCRRPFEFDGRLRKAVKTDKYIWSYGFPSLETHMAVVVYGGIAFYSG--------------KWQLLWLFTPIIAFVGFTRVYACARFIHQVALSGGTGALGLALAFWAVRSLRAWGVRYRCHYYWAFLALTVVLVVVGLWAESNECSWLGVPREEYRRVLRGILETS 248
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A7S3GX49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GX49_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.810e-17 Identity = 67/182 (36.81%), Postives = 98/182 (53.85%), Query Frame = 1
Query: 22 RLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAF--VGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMV---AYQVENNESQLMGIRKQEYLRVLSNIVKESQQAQSATV 552
R ++ A RP YD RL+PLTD S+G PSLE++M+ V+ G S + + LL LG I +GF+RVY+ SRF HQ+ S + G +GL ++ M HH G V+VI+ LG++ A +ENNES+L I ++E++RV+SNI+ S+TV
Sbjct: 3 RCLIEAKRPVEYDIRLQPLTDTRADSYGFPSLESYMSVVIMGHLFLSFKN----------------IWLLPLGAIVVFVIGFSRVYSRSRFPHQIVGSWLAGFVGLLVSMHCCERMNIHK--MSHHQHGVCVMVIV-LGVLCNFALNLENNESRLAQIPREEFIRVMSNIISGGDNNISSTV 165
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A8K1CBM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBM6_PYTOL) HSP 1 Score: 68.9 bits (167), Expect = 8.250e-10 Identity = 41/173 (23.70%), Postives = 89/173 (51.45%), Query Frame = 1
Query: 1 MAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIV 519
+ LL+L+ PRP +D + + ++G P +++HM+ VV + +++ RL+ + Y ++ FTR+ SRF+ Q+ S +TG GL G + + L+ ++ + ++++ + ++ VENN+S+++G+ +Q+++ VL+NI+
Sbjct: 108 LLAVLLLQLLAQVPRPVDFDSSMLIPSCADPDTYGFPCVDSHMSIVVL--------------LPVIENTQSRFARLMFVAYTVYLAFTRLCLGSRFLSQIVGSWLTGFTGLVAGNHGHVVVKAYKLSRGYNTAAIIALIVLLMFVLGQWVENNDSRIVGVPRQDFIEVLTNIL 266
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A6A3K379_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3K379_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 4.060e-8 Identity = 45/170 (26.47%), Postives = 85/170 (50.00%), Query Frame = 1
Query: 19 LRLVLSAPRPFMYDQRLRPLTDRY---ETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIV 519
L+ + +PRP + L L DR + + G P ++ HMA VV + + +V+LL + + ++ ++ +RF+ QV S + G G+ G + S L+ ++V V ++++A+ ++ +ENNES LMGI KQ++++V +NI+
Sbjct: 23 LQYLAESPRPIDLYRSLWHLQDRRCIDQNTGGFPCVDCHMAVVVL--------------LPAILHTQSVVVQLLFVSMVLYIAACKLLLATRFISQVLGSWLMGFTGILMGNHGHVVITSYKLSRGYNVAAIVALLVLAMLVLGMWIENNESSLMGIPKQDFIQVFTNIL 178
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: G4YHZ8_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YHZ8_PHYSP) HSP 1 Score: 61.6 bits (148), Expect = 1.780e-7 Identity = 45/170 (26.47%), Postives = 84/170 (49.41%), Query Frame = 1
Query: 19 LRLVLSAPRPFMYDQRLRPLTDRY---ETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIV 519
L+ + +PRP + L L DR E + G P ++ HMA VV + + +V+LL + + ++ ++ +RF+ QV S + G G+ G + S L+ +++ V ++++A+ ++ +ENNES LMGI KQ+++ V +NI+
Sbjct: 92 LQYLAQSPRPIDLYRPLWQLQDRRCVDEDTRGFPCVDCHMAVVVL--------------LPAILHTQSAVVQLLFVLIVLYIAACKLLLATRFISQVLGSWLMGFTGILIGNHGHVVVKSYKLSRGYNIAAIVALLVLAMLVLGMWIENNESSLMGIPKQDFIEVFTNIL 247
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A6G0KTH7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0KTH7_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 3.110e-7 Identity = 46/170 (27.06%), Postives = 84/170 (49.41%), Query Frame = 1
Query: 19 LRLVLSAPRPFMYDQRLRPLTDRY---ETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIV 519
L+ + +PRP + L L DR + + G P ++ HMA VV + + +V+LL + + ++ ++ +RF+ QV S + G GL G + S L+ ++V V ++++A+ ++ +ENNES LMGI KQ+++ V +NI+
Sbjct: 92 LQYLAESPRPIDLYRSLWYLQDRRCIDQDTGGFPCVDCHMAVVVL--------------LPAILRTQSVVVQLLFVSIVLYIAACKLLLATRFISQVLGSWLMGFTGLLLGNHGHVVVTSYNLSRGYNVAAIVALLVLAMLVLGMWIENNESSLMGIPKQDFIEVFTNIL 247
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: K3WB16_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB16_GLOUD) HSP 1 Score: 58.2 bits (139), Expect = 3.470e-6 Identity = 51/189 (26.98%), Postives = 89/189 (47.09%), Query Frame = 1
Query: 1 MAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALG---------------LAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALG-MVAYQVENNESQLMGIRKQEYLRVLSNIV 519
+ G LL+ V RP D L ++G P +++HM+ VV + V+ P+V+ + ++G T+++ +RFV QV S +TG G L+ G++ + L++R G +VV+I+ L +V +ENNES L+G+ KQ+Y+ V++NI+
Sbjct: 72 LLGVLLLQYVAQIGRPIDLDSSLYEHQYTDPDTNGFPCVDSHMSVVVL-----------LPVIMHVES---PVVQSSLALLLLYLGMTKLFVATRFVSQVVGSWLTGLAGILVGNHGHAVLKTYKLSRGYKYEEKAQKLELSLR---TGAIVVLIVFLMYVVGTWIENNESCLLGVPKQDYVDVITNIL 243
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Match: A0A2P4X8C0_9STRA (Transmembrane protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8C0_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 4.840e-6 Identity = 42/176 (23.86%), Postives = 83/176 (47.16%), Query Frame = 1
Query: 1 MAGAALLRLVLSAPRPFMYDQRLRPLTDRY---ETSHGLPSLETHMATVVAGWWAESGGSNGSSTVNGVDDGVQPLVRLLALGYIAFVGFTRVYACSRFVHQVALSSVTGALGLAWGWRLSTYLDSMALTMRHHVRGTVVVVIIALGMVAYQVENNESQLMGIRKQEYLRVLSNIV 519
M +L+ + +PRP L D+ E + G P ++ HMA VV + + +++L+ +G + ++ ++ +RF+ QV S + G G+ G + S LT + + V +++ ++ ++ +ENN+S LMGI KQ+++ V +NI+
Sbjct: 97 MLAVVVLQYLAESPRPIDLYHPLWQWQDQRCIDEDTGGFPCVDCHMAIVVL--------------LPAMLHTQSVVIQLIFVGIVVYIALCKLLLATRFISQVLGSWLMGFAGILIGNHGHVVVKSYKLTRGYTIGAIVALLVFSMIVLGMWIENNDSSLMGIPKQDFMEVFTNIL 258 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1810.5573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1810.5573.1 >prot_Ecto-sp13_S_contig1810.5573.1 ID=prot_Ecto-sp13_S_contig1810.5573.1|Name=mRNA_Ecto-sp13_S_contig1810.5573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=257bp MAGAALLRLVLSAPRPFMYDQRLRPLTDRYETSHGLPSLETHMATVVAGWback to top mRNA from alignment at Ecto-sp13_S_contig1810:10434..12612+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1810.5573.1 ID=mRNA_Ecto-sp13_S_contig1810.5573.1|Name=mRNA_Ecto-sp13_S_contig1810.5573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1810:10434..12612+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1810:10434..12612+ >mRNA_Ecto-sp13_S_contig1810.5573.1 ID=mRNA_Ecto-sp13_S_contig1810.5573.1|Name=mRNA_Ecto-sp13_S_contig1810.5573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1810:10434..12612+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |