mRNA_Ecto-sp13_S_contig1807.5554.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1807.5554.1
Unique NamemRNA_Ecto-sp13_S_contig1807.5554.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: D8LCN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN7_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 1.210e-93
Identity = 126/131 (96.18%), Postives = 127/131 (96.95%), Query Frame = 1 
Query:    1 LEAGCDECDVSCGEFQECLLYEDGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASCEATGNCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRSCR 393
            LEAGC ECDVSCGEFQECLLYEDGLESEYYCADTCDDP+RCADNETCVLTEV CIRAPCPPVASCEAT NCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKR CR
Sbjct:  156 LEAGCGECDVSCGEFQECLLYEDGLESEYYCADTCDDPDRCADNETCVLTEVACIRAPCPPVASCEATENCDGACDDTQECLQYARNGKYYCSDTCDSPAACEEGEECSTRPRKWCRSSGYDGCPEKRRCR 286
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: H3H1D9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H1D9_PHYRM)

HSP 1 Score: 73.2 bits (178), Expect = 1.680e-12
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   19 ECDVSCGEFQECLLYE-DGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASCEATGN 210
            EC + CGEFQEC +Y+ DG E   YCAD C +  RC +  TC L EV+CIRAPCPPVA C  T +
Sbjct:  495 ECAMKCGEFQECRIYDADGSE---YCADVCAE-GRCPEGTTCELQEVQCIRAPCPPVAECTNTSS 555
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: A0A662Y1D0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1D0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.520e-12
Identity = 37/64 (57.81%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   22 CDVSCGEFQECLLYE-DGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASC-EATG 207
            C ++CGEFQ C +YE DG E   YCAD C +  RC  + TC L EV+CIRAPCPPVA C ++TG
Sbjct:  390 CTMACGEFQTCQIYEPDGTE---YCADVCSE-GRCPQDSTCELQEVQCIRAPCPPVAVCKDSTG 449
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: A0A329SZI3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329SZI3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.070e-11
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   22 CDVSCGEFQECLLYEDGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASCE-ATG 207
            C + CG+FQEC +YE   +   YCAD C +  RC +  TC L EV+CIRAPCPPVA+C  ATG
Sbjct:  644 CTMECGDFQECRIYEP--DDSEYCADVCAE-GRCPEGFTCELQEVQCIRAPCPPVATCNNATG 703
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: W2QDR7_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QDR7_PHYPN)

HSP 1 Score: 65.9 bits (159), Expect = 3.580e-11
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:   22 CDVSCGEFQECLLYE-DGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASC 195
            C + CG+FQEC +YE DG +   YCAD C +  RC     C L EV+CIRAPCPP+A+C
Sbjct:   74 CTMECGDFQECRIYEPDGSD---YCADVCAE-GRCPKGSICELQEVQCIRAPCPPMATC 128
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: A0A3R7K578_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K578_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 6.500e-11
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   22 CDVSCGEFQECLLYE-DGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASCEATGNCDG 219
            C + CGEFQEC +Y  DG E   YCAD C +  RC    TC L EV+CIRAPCPPVA C       G
Sbjct:  256 CSMECGEFQECQIYAPDGSE---YCADVCIE-GRCPKGVTCELQEVQCIRAPCPPVAVCNNEATAQG 318
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: A0A3F2RNQ6_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNQ6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 7.990e-11
Identity = 36/67 (53.73%), Postives = 40/67 (59.70%), Query Frame = 1 
Query:   22 CDVSCGEFQECLLYE-DGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASCEATGNCDG 219
            C + CGEFQEC +Y  DG E   YCAD C +  RC    TC L EV+CIRAPCPPVA C       G
Sbjct:  307 CSMECGEFQECQIYAPDGSE---YCADVCIE-GRCPKGVTCELQEVQCIRAPCPPVAVCNNEATAQG 369
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: K3WXK2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXK2_GLOUD)

HSP 1 Score: 55.5 bits (132), Expect = 2.480e-6
Identity = 24/56 (42.86%), Postives = 34/56 (60.71%), Query Frame = 1 
Query:   28 VSCGEFQECLLYEDGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASC 195
            + CG F EC +  +      YCA+ C  PNRCA+N++CVL +V+C   PC P+  C
Sbjct:  380 IRCGSFSECRV--NARTGNGYCAEVCR-PNRCAENQSCVLKQVQCFTTPCDPIPEC 432
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BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Match: A0A662Y1M7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1M7_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 8.960e-5
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:   34 CGEFQECLLYE-DGLESEYYCADTCDDPNRCADNETCVLTEVECIRAPCPPVASCEAT 204
            CG+ ++C++   DG ES   C   C    RCA   TC + +V+CI+APCPPVA+C  T
Sbjct:  114 CGKLKKCVISSIDGTES---CISPCSTV-RCASGYTCEVEQVQCIKAPCPPVAACNPT 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1807.5554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LCN7_ECTSI1.210e-9396.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H3H1D9_PHYRM1.680e-1256.92Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662Y1D0_9STRA7.520e-1257.81Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A329SZI3_9STRA2.070e-1155.56Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2QDR7_PHYPN3.580e-1154.24Uncharacterized protein n=14 Tax=Phytophthora para... [more]
A0A3R7K578_9STRA6.500e-1153.73Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RNQ6_9STRA7.990e-1153.73Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
K3WXK2_GLOUD2.480e-642.86Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662Y1M7_9STRA8.960e-544.83Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1807contigEcto-sp13_S_contig1807:2..1689 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score283.5
Seed ortholog evalue5.1e-74
Seed eggNOG ortholog2880.D8LCN7
Model size396
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2D2W6@1,2SP8K@2759
Ec32 ortholog descriptionTissue inhibitor of metalloproteinases-like, OB-fold
Ec32 orthologEc-03_002200.1
Cds size396
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462933.4378686-CDS-Ecto-sp13_S_contig1807:1..491681462933.4378686-CDS-Ecto-sp13_S_contig1807:1..49Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1807 2..49 +
1681462933.4603133-CDS-Ecto-sp13_S_contig1807:610..7991681462933.4603133-CDS-Ecto-sp13_S_contig1807:610..799Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1807 611..799 +
1681462933.4757087-CDS-Ecto-sp13_S_contig1807:1530..16891681462933.4757087-CDS-Ecto-sp13_S_contig1807:1530..1689Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1807 1531..1689 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1807.5554.1prot_Ecto-sp13_S_contig1807.5554.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1807 2..1689 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1807.5554.1

>prot_Ecto-sp13_S_contig1807.5554.1 ID=prot_Ecto-sp13_S_contig1807.5554.1|Name=mRNA_Ecto-sp13_S_contig1807.5554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
LEAGCDECDVSCGEFQECLLYEDGLESEYYCADTCDDPNRCADNETCVLT
EVECIRAPCPPVASCEATGNCDGACDDTQECLQYARNGKYYCSDTCDSPA
ACEEGEECSTRPRKWCRSSGYDGCPEKRSCR*
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mRNA from alignment at Ecto-sp13_S_contig1807:2..1689+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1807.5554.1 ID=mRNA_Ecto-sp13_S_contig1807.5554.1|Name=mRNA_Ecto-sp13_S_contig1807.5554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1688bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1807:2..1689+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGAAGCCGGGTGCGATGAATGTGACGTATCTTGCGGCGAGTTTCAGGT
ATGTGTGACAAAGATGATGCGCGATGGGCGAATATCCATGTGGTGGAGCA
AGGCACTATGTACATGCACCCGGTGTTACCTGTTGACACCAATCGCTAGG
TTCGCGCTCTACACTTTATGTGTAGAAGGTGTCGGCGATGCATGTACATT
TCGTGTTGATGTTGCCGTTGTACCCGAGACTGCGCCATCGGCCCGAGAGT
GGTGTTGCTTGCGCTTTTGCACTTGCACGTACGTGTACCAATATTCGGGA
ACAGACTGCGGAGGACGGCGTCCTTTGGCACTGACCGTGCAGACTGATGC
CTACGATGTACGCTTTGGTGACAGCCTTGGCGCCGGTTCTCCCTGCGATG
CATGCAGTGCTCGGCTGCACAGGCGCACGAACCGACAAATTTCGCTCCAT
CGTTGGATAAATAATCCACGGATCCCCGACCAATTGTCCCCTGTAACATT
CTTGAAAGTTTCGCCAAGACGTCCAAACAGACGGCGATTTTCGCAACACC
GCTGCGCATGAACCCATGCAAGACCTGGCCCCTAACCTTTTGTGGACCCG
GCCGAACAGGAATGTCTGCTGTACGAAGACGGACTGGAATCGGAGTACTA
CTGCGCGGACACCTGCGACGACCCGAACCGGTGTGCGGACAACGAAACGT
GCGTGCTGACCGAGGTTGAGTGCATCCGCGCACCGTGCCCGCCCGTGGCA
TCTTGCGAAGCGACCGGAAACTGTGATGGAGCGTGTGACGATACTCAGGT
TCGTGCTTTTTTCGCCCGTCGCCATTGAGGAACAACAGATGAACACAAAC
CACACAGTTGTCATGGTTAGGTTTGGTGCTCAAGTGGTAAATTGTTTTTG
GGGGGGGACGTCCCGTCGCAACCACGACTGTTTGAGGAATGGCGGTGTAC
TGTCGCGGAGGAAAATGGAAATGCAGTGGACTCCACATACAGACTATTGC
ACGCAGGCAATCGCTCCGCCTCTTCCGAAAAGAAACTCTACGGTAGTGGC
ATCCCACATGTCCTCAATTTTCATGAAGAAAAAGTCGGGAGTAACTCGAG
GAGGTGTTCAATACAATCGCCATCGGAAGATTATCTGGAGAAGTTCATGT
GTCGGAACTTGATGCGGCCGACTCATTACCAGTGACAGGCGACCGCTCAA
CGCCTTTCCACGTCGATACCGTTCACTCCTCGCGCACCGACAACATCTAT
TTTCGCGGTAGCGAGCTATTCATTGTCATCTGGACGGCACAAAGTCCCTG
ATTGTTGAATGACGACACGATAAAGCGATATAGGCACGCGCATTCTCCTC
TGCGTGGGGCGGGCAACGTCGGCTGCGTTGCTACCATCATCCCGAATCAG
CGTTGCCTTGAAGGAAGAGGGCAAAACCTCCCTGGTTCTAGTCGCTTTCG
CGAAAAGAGCGTCTGGTCCGACTGCCATCGACCGCGCCTTGAACGTGCCA
AACACCTGTGTGCGATGTCGTCCTTTCAGGAGTGCCTCCAGTATGCCAGG
AACGGCAAGTACTACTGCTCCGACACCTGCGACAGCCCGGCCGCGTGTGA
GGAGGGAGAGGAGTGTTCCACCCGGCCTCGGAAGTGGTGCCGTAGCAGCG
GCTACGATGGCTGTCCCGAGAAGCGCAGTTGTCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1807:2..1689+

>mRNA_Ecto-sp13_S_contig1807.5554.1 ID=mRNA_Ecto-sp13_S_contig1807.5554.1|Name=mRNA_Ecto-sp13_S_contig1807.5554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1807:2..1689+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGAAGCCGGGTGCGATGAATGTGACGTATCTTGCGGCGAGTTTCAGGA
ATGTCTGCTGTACGAAGACGGACTGGAATCGGAGTACTACTGCGCGGACA
CCTGCGACGACCCGAACCGGTGTGCGGACAACGAAACGTGCGTGCTGACC
GAGGTTGAGTGCATCCGCGCACCGTGCCCGCCCGTGGCATCTTGCGAAGC
GACCGGAAACTGTGATGGAGCGTGTGACGATACTCAGGAGTGCCTCCAGT
ATGCCAGGAACGGCAAGTACTACTGCTCCGACACCTGCGACAGCCCGGCC
GCGTGTGAGGAGGGAGAGGAGTGTTCCACCCGGCCTCGGAAGTGGTGCCG
TAGCAGCGGCTACGATGGCTGTCCCGAGAAGCGCAGTTGTCGCTAG
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