mRNA_Ecto-sp13_S_contig18054.5544.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A6H5KU08_9PHAE (HIT-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU08_9PHAE) HSP 1 Score: 371 bits (953), Expect = 3.640e-121 Identity = 212/243 (87.24%), Postives = 215/243 (88.48%), Query Frame = 3
Query: 3 SPPMTAGVQGKKDAKDKDNELRVLVPGRAGAEGEGATLAAAGTGRGGRVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIRITDRGDDGNGDVGPHAEEGEVGEDEDEELMFQPERLDALALALKDRGHALPAKSSSFSXXXXXXXXXXXXXXXXXXXXITASS----ANTVTVDPAAVKVNASRGSKIGRSLPSS 719
SP M AGVQGKKDAKDKDNELRV+VP RAGAEG+GATLAAAG GRGGRVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIR+TDRG DGNG GPHAEEGEVGEDED ELMFQPERLDALALALKDRGHALP KSSSFS XXXXXXXXXXX ANTV VDPAAVKVNASRGSKIGRSLPSS
Sbjct: 55 SPLMAAGVQGKKDAKDKDNELRVVVPVRAGAEGQGATLAAAGAGRGGRVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIRLTDRGGDGNGGAGPHAEEGEVGEDEDGELMFQPERLDALALALKDRGHALPVKSSSFSADSPSTAAAXXXXXXXXXXXXXXXXXXXXANTVIVDPAAVKVNASRGSKIGRSLPSS 297
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: D8LQD6_ECTSI (HIT-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD6_ECTSI) HSP 1 Score: 259 bits (663), Expect = 1.290e-79 Identity = 132/146 (90.41%), Postives = 136/146 (93.15%), Query Frame = 3
Query: 12 MTAGVQGKKDAKDKDNELRVLVPGRAGAEGEGATLAAAGTGRGGRVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIRITDRGDDGNGDVGPHAEEGEV 449
M AGVQGKKDAKDK+NEL+V+V GRA AEGE TLAAAG GRGGRVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIR+TDRG DGNG PHAEEGEV
Sbjct: 1 MAAGVQGKKDAKDKNNELKVVVRGRARAEGEDVTLAAAGAGRGGRVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIRLTDRGGDGNGGDDPHAEEGEV 146
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A7S2LAJ1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2LAJ1_9DINO) HSP 1 Score: 72.4 bits (176), Expect = 1.060e-11 Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 3
Query: 147 VCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVER 317
+C VC RA+A Y+CPRC +GYCS CYK HG CTE+F++ VE + R + +ER
Sbjct: 5 ICGVCTRAAAQYTCPRCQLGYCSLSCYKGHGDQCTESFYKAQVEEQLRSQRASGIER 61
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A7S3V1P5_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V1P5_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 4.950e-11 Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIRITDRGDDGNGDVGPHAEEGEVGEDEDEELMFQPERL 494
R+C VCAR + Y CP+C V YC+ CY+ HG+GCTE FF+ HV+ E LR+ + K + +R +++L+R R D +EG E+E+E+L+ + E+L
Sbjct: 7 RICQVCARKESKYKCPKCNVSYCTVDCYRSHGTGCTEKFFKKHVKDEMSLRKHEN-------KNLLSKQRLETMKMLQRNRSQFDDD---------CDEGSYEEEEEEDLVERLEKL 107
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A835WTC3_9CHLO (HIT-type domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WTC3_9CHLO) HSP 1 Score: 73.6 bits (179), Expect = 5.090e-11 Identity = 37/82 (45.12%), Postives = 50/82 (60.98%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETR-LREGDEVERGSGVKGPKAGRRASMVEVLRRIR 386
R+C VCAR A Y+CPRC +GYCS CYK HG CTE+F++ E + +R GDE +R +MVE+LRR++
Sbjct: 7 RICRVCARQYARYTCPRCNIGYCSLPCYKQHGEHCTESFYKEQAVGELQAVRAGDE-------------QRRAMVEILRRVQ 75
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A8J5XQ31_DIALT (HIT-type domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XQ31_DIALT) HSP 1 Score: 72.8 bits (177), Expect = 6.440e-11 Identity = 51/140 (36.43%), Postives = 65/140 (46.43%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRLREGDEVERGSGVKGPKAGRRASMVEVLRRIR---ITDRGDDGNGDVGPHAEEGEVGEDEDEELMFQPERLDALALALKDRGHALPAKSSS 554
RVCSVCAR A Y+CPRC V CS CY+ HG+ CT+AF R + S + A + M ++LRR+R + D G DG G P AE A ALA + R HAL A +S+
Sbjct: 9 RVCSVCAREFAKYTCPRCAVQSCSLACYRTHGAACTDAFQRDQAQ--------------SAARAECAPAKDEMEDILRRVRAQTLDDGGPDGGGSSDPVAEA-------------------AAALAHERRVHALQALASA 115
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A024TRU8_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TRU8_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 8.270e-10 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRL 293
RVC VC + Y+CPRC YC CYK HG+ CTEAF++GHV+ E RL
Sbjct: 48 RVCGVCQANESKYTCPRCNAVYCGVACYKTHGTTCTEAFYKGHVQSEMRL 97
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A3R6YXS0_9STRA (HIT-type domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YXS0_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 1.270e-9 Identity = 28/50 (56.00%), Postives = 34/50 (68.00%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETRL 293
RVC VC + Y+CPRC YC CYK HG+ CTEAF++GHV+ E RL
Sbjct: 48 RVCGVCQANESKYTCPRCNAVYCGVACYKTHGTTCTEAFYKGHVQSEMRL 97
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A2K3DHW8_CHLRE (HIT-type domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DHW8_CHLRE) HSP 1 Score: 68.9 bits (167), Expect = 1.740e-9 Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERE-TRLREGDEVERGSGVKGPKAGRRASMVEVLRR 380
R+C VCAR A Y+CPRC +GYCS CYK HG CTE+F++ E +R GDE +R +M+++LRR
Sbjct: 7 RICRVCARQYARYTCPRCNIGYCSLPCYKQHGEHCTESFYKEQAVGELVSVRAGDE-------------QRRAMLDILRR 73
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Match: A0A835SV82_CHLIN (HIT-type domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SV82_CHLIN) HSP 1 Score: 68.9 bits (167), Expect = 1.740e-9 Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 3
Query: 144 RVCSVCARASADYSCPRCLVGYCSSKCYKVHGSGCTEAFFRGHVERETR-LREGDEVERGSGVKGPKAGRRASMVEVLRRIR 386
R+C VCAR A Y+CPRC +GYCS CYK HG CTE+F++ E + + GDE RG M+E+L+R +
Sbjct: 7 RICRVCARQYARYTCPRCNIGYCSLPCYKQHGEHCTESFYKEQAVGELQSVSAGDEQRRG-------------MLEILKRAQ 75 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18054.5544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18054.5544.1 >prot_Ecto-sp13_S_contig18054.5544.1 ID=prot_Ecto-sp13_S_contig18054.5544.1|Name=mRNA_Ecto-sp13_S_contig18054.5544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp MTAGVQGKKDAKDKDNELRVLVPGRAGAEGEGATLAAAGTGRGGRVCSVCback to top mRNA from alignment at Ecto-sp13_S_contig18054:666..2951+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18054.5544.1 ID=mRNA_Ecto-sp13_S_contig18054.5544.1|Name=mRNA_Ecto-sp13_S_contig18054.5544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2286bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18054:666..2951+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18054:666..2951+ >mRNA_Ecto-sp13_S_contig18054.5544.1 ID=mRNA_Ecto-sp13_S_contig18054.5544.1|Name=mRNA_Ecto-sp13_S_contig18054.5544.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18054:666..2951+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |