prot_Ecto-sp13_S_contig18031.5532.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18031.5532.1
Unique Nameprot_Ecto-sp13_S_contig18031.5532.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length214
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Match: D7FY15_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY15_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.780e-22
Identity = 172/180 (95.56%), Postives = 173/180 (96.11%), Query Frame = 0 
Query:    1 MMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMKKKADAKPDNVTYNTVINALGRCGRVKEATLHLHAMKE 180
            MMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MKKKA  KPDNVTYNTVINALGRCGRVKEAT+HLHAMKE
Sbjct:  135 MMRSEGLAPTAITYNVLLRLCGLGGCWATGLELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMKKKAGVKPDNVTYNTVINALGRCGRVKEATVHLHAMKE 314
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BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Match: A0A6H5L0B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B1_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-11
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 0 
Query:    1 MMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 33
            MMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL
Sbjct:  444 MMRSEGLAPTAITYNVLLRLCGLGGCWATGLEL 476
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BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Match: A0A7J6V656_THATH (Pentatricopeptide repeat-containing protein family n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V656_THATH)

HSP 1 Score: 49.3 bits (116), Expect = 6.990e-5
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 0 
Query:  149 KPDNVTYNTVINALGRCGRVKEATLHLHAMKEQGLSPDVVTFGTLIHAC 197
            +P+ +  N +INA G  GR  EA    H +KE G+SPDVVT+ TL+ AC
Sbjct:    7 EPNLIMLNLLINAFGIAGRYLEALSIFHQLKEIGISPDVVTYITLMKAC 55
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18031.5532.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FY15_ECTSI1.780e-2295.56PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L0B1_9PHAE1.300e-11100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7J6V656_THATH6.990e-548.98Pentatricopeptide repeat-containing protein family... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 150..198
e-value: 7.7E-14
score: 51.6
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 119..151
e-value: 2.4E-5
score: 22.2
coord: 153..187
e-value: 7.8E-8
score: 30.0
coord: 48..81
e-value: 1.2E-5
score: 23.1
coord: 12..45
e-value: 7.5E-6
score: 23.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 151..185
score: 12.277
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 45..79
score: 11.29
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 80..114
score: 6.621
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 115..145
score: 9.635
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 186..214
score: 8.473
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..44
score: 9.778
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 4..129
e-value: 1.9E-6
score: 27.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 146..214
e-value: 1.6E-17
score: 65.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..145
e-value: 6.2E-35
score: 123.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..108
coord: 94..212
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..28
score: 0.486

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18031contigEcto-sp13_S_contig18031:885..3177 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18031.5532.1mRNA_Ecto-sp13_S_contig18031.5532.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18031 858..3177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18031.5532.1 ID=prot_Ecto-sp13_S_contig18031.5532.1|Name=mRNA_Ecto-sp13_S_contig18031.5532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MMRSEGLAPTAITYNVLLRLCGLGGCWATGLELMGMMEDEGITPNPYHYN
SMFMALERGERWREAADLFRKMRASGTRPNALTYAPLIGVMDRCNKQDMA
GAVLKEMLRESPRDSTREYNLLLNACAKARKWEHAQLVFEDMKKKADAKP
DNVTYNTVINALGRCGRVKEATLHLHAMKEQGLSPDVVTFGTLIHACAQS
AKREPALALFAELV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf