mRNA_Ecto-sp13_S_contig18021.5528.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig18021.5528.1
Unique Name	mRNA_Ecto-sp13_S_contig18021.5528.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18021.5528.1 vs. uniprot
Match: D7FWX1_ECTSI (RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWX1_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 1.970e-54
Identity = 222/291 (76.29%), Postives = 225/291 (77.32%), Query Frame = 1

Query:    1 MSDPMDVTTGPVVPNTAEGSAAPAAADPAPANXXXXXXXXXXXXXXXXVKPTGDAAGHDNSIGNAAVAPTKENPSTEEPSGGDADAAXXXXXXXXXXXXXXXXAKQGGASPNERGDGEPADXXXXXXXXXXXXXXXXSDTKGXXXKEDPMEETNEDVEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRGGWDTPAAPGAVVKKGWGDAPPVAPXXXXXXLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPVRP 873
            MSDPMDVTTG V P+  E SAA  A+      XXXXXXXXXXXXXXXX                AA+APTKENPSTEEPSGGDADAA XXXXXXXXXXXXXXX       P          XXXXXXXXXXXXXXXX D KG   KEDPME TNEDVEA       XXXXXXXXXXXXXXXXXXXXXXXXXXX    TRRGGWDTPAAPGAVVKKGWGDAPPVAPXXXXXXLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQP  P
Sbjct:    1 MSDPMDVTTGSVAPDAVEISAA--ASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAIAPTKENPSTEEPSGGDADAAPXXXXXXXXXXXXXXXXXXXXXXPTXX---XXXXXXXXXXXXXXXXXXXXXDAKGGGAKEDPMEGTNEDVEAMAAAAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXKRKRTRRGGWDTPAAPGAVVKKGWGDAPPVAPXXXXXXLQELQRKLAEEQVAAAMGQAPPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPSNP 286

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18021.5528.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18021.5528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FWX1_ECTSI	1.970e-54	76.29	RNA-binding protein SiahBP n=2 Tax=Ectocarpus TaxI...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18021	contig	Ecto-sp13_S_contig18021:110..3209 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	203.8
Seed ortholog evalue	1.1e-49
Seed eggNOG ortholog	2880.D7FWX1
Preferred name	PUF60
Model size	876
KEGG ko	ko:K11798,ko:K12811,ko:K12838
KEGG Pathway	ko03040,map03040
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000245,GO:0000375,GO:0000377,GO:0000380,GO:0000381,GO:0000398,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006376,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007276,GO:0007281,GO:0007282,GO:0007623,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008356,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030054,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0042127,GO:0042162,GO:0042752,GO:0042789,GO:0042802,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0043487,GO:0043488,GO:0043565,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045727,GO:0045893,GO:0045926,GO:0045935,GO:0046483,GO:0046700,GO:0048024,GO:0048468,GO:0048511,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051301,GO:0051338,GO:0051347,GO:0051704,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons	2
EggNOG free text desc.	RNA splicing
EggNOG OGs	KOG0124@1,KOG0124@2759
EC	3.6.4.13
Cds size	876
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03041,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462931.7154963-CDS-Ecto-sp13_S_contig18021:109..808	1681462931.7154963-CDS-Ecto-sp13_S_contig18021:109..808	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18021 110..808 +
1681462931.7258947-CDS-Ecto-sp13_S_contig18021:3032..3209	1681462931.7258947-CDS-Ecto-sp13_S_contig18021:3032..3209	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18021 3033..3209 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18021.5528.1	prot_Ecto-sp13_S_contig18021.5528.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig18021 110..3209 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig18021:110..3209+
coding sequence from alignment at Ecto-sp13_S_contig18021:110..3209+

protein sequence of mRNA_Ecto-sp13_S_contig18021.5528.1

>prot_Ecto-sp13_S_contig18021.5528.1 ID=prot_Ecto-sp13_S_contig18021.5528.1|Name=mRNA_Ecto-sp13_S_contig18021.5528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=292bp
MSDPMDVTTGPVVPNTAEGSAAPAAADPAPANNNGSTKDNAAAAAAAAVK
PTGDAAGHDNSIGNAAVAPTKENPSTEEPSGGDADAAPPAALEAAAAPEA
AAVAKQGGASPNERGDGEPADAAAAAAAAASATADAPSDTKGGGAKEDPM
EETNEDVEAMAAAAKSLAQAAAAASAPRKETTESGAAGGAEQPKRKRTRR
GGWDTPAAPGAVVKKGWGDAPPVAPVVPMTPLQELQRKLAEEQVAAAMGQ
APPVTSVSAGAAALGLTMGAAMQAPGAGTRTQTAPAQPVRP*

mRNA from alignment at Ecto-sp13_S_contig18021:110..3209+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig18021.5528.1 ID=mRNA_Ecto-sp13_S_contig18021.5528.1|Name=mRNA_Ecto-sp13_S_contig18021.5528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3100bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18021:110..3209+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGACCCTATGGACGTGACCACGGGACCTGTTGTCCCCAATACTGC
CGAAGGTTCTGCTGCCCCCGCTGCCGCGGATCCGGCCCCTGCGAACAACA
ACGGGTCCACCAAAGATAATGCTGCGGCGGCTGCTGCTGCTGCTGTCAAG
CCAACCGGCGACGCCGCCGGCCACGACAATAGCATTGGCAATGCTGCCGT
TGCCCCTACGAAAGAAAACCCGTCGACTGAGGAGCCCTCCGGAGGTGATG
CTGATGCAGCACCGCCGGCTGCACTCGAAGCAGCAGCTGCTCCGGAGGCA
GCAGCCGTAGCCAAGCAAGGCGGAGCGTCTCCCAACGAAAGAGGCGATGG
TGAACCCGCCGATGCCGCCGCCGCCGCCGCCGCTGCTGCTTCTGCTACTG
CCGATGCTCCATCAGATACCAAAGGCGGCGGCGCCAAAGAGGACCCGATG
GAGGAGACCAATGAGGATGTGGAGGCCATGGCCGCGGCGGCCAAATCACT
CGCACAAGCGGCGGCGGCCGCGAGTGCGCCACGCAAGGAGACCACGGAGA
GCGGTGCTGCTGGAGGAGCCGAGCAGCCCAAGAGAAAGCGCACCCGGCGG
GGAGGGTGGGACACGCCTGCTGCCCCCGGCGCTGTGGTCAAGAAAGGGTG
GGGGGACGCACCGCCAGTGGCCCCCGTGGTTCCGATGACCCCCTTGCAGG
TGAGACTTGGTGTGCTGAATGCAAAGGACTGCTGTGTCGGGCGGGCGCTT
ACACAGCAGTACTTCAATCTCGGGCTTGCATTTGTTCAAAAACTGTGTAA
TGCCTACAGCATATCTCGTGACGAAAGCGGTGTGTTCTGTCCTCAGCTGC
CGCGCTCCCGATCCTCCTCCCGTTGTCAGTCTAGTTACATGACGCCTATG
CACATATGCACATTCATACAAGCGCACAACATCGATTTTGTCGGTGAATC
TTCAGCTGTCGTGGGCATCGATTTTATTTTATTTTTCTGGCATGGGTCGT
GCTGCTGTAGATGATGGGTTGGACGGCTCGTGATCGGACACCTCTCCGGC
ACACATCAGGCCTTTCGGGCCTTCGCTGAAAATGGCGGTGCCAGACGGGT
AGGCTAAATATGCAAATATGGAAATACGTTCATACGGTACATTAACTATC
TGAACGTTCGGCTGCAGTGCCACGCGGCAAGCTCCCTGTGGTGTCTAGGG
GGTGCGTGGTGTCTATTAATACCATAGCGGCGGTTAGCCGATGGGGAGAT
GGGTCACTTCCTCAAACAGCAAGAGTAGAGATGCACGTAGACGTGGAAGA
GACAAATTCGCACGGCTTCGTCAACAAATCAGCAGAGTTCCTAAGCTTAG
ATTTTGACGAGTAATGTTCGTTGTACATGTTGAGGCAGTTGAGAGTGACT
ATGACCTTCGTACTGTGGTAGCTTCGTAGCTTTCAACACGTGAATAGGGC
GACCTGCCTTCTGAGGCTGACAAAATCGCTCTGCTGTGCTGTGCTCTCTC
TCGCTCGCTTCGTGCGCGTTTCCTCTTTACTTCTTCTCTCTCGCTTGTGT
TTGTTCCTGCTCGTGTGTTCTTGTTTCTCTTTCGGTCTTCTTGCCGCCGT
GTTTTTTTTCTTTTTCTTTCCTTTTGTTCTGTCTCTCCTCGGTGATCTGC
CACCATCCGCCTCTTTATCGCTGTTGTCTCGCTCTCCTGTGGACGTGTCG
ATGCCCCGACTATTTTTTCTGTGCTTTGTGCCGCTCCCCTTTTGTCGCTG
TCGCGCCCCGGGACTCCATTTGCCCCGTCGCTGTTCCGTGCGGTCTTTCT
GCGTCTCCCCCTCCCTCTCCCCGTCTCCAACTTGTTTGTGTTCGTACGCG
TGTCTCCCATCTTTCCCCCCGCGTCTGCCGTTTTCCGTTGTTCCCCGTTT
GCTGCCGACATTGCACGGCCACACTCCTCGGCACCACGCCGGCCACGCCT
CAAACTTGACGCCCGGTTGCTTCATCTCCCTCTGGTCGTACTCTGCTTTT
CCCGCCCCGGCTCGTCCTGTTGCCGGCCTTCTCCTCCGGGGTGGCGTGGC
ACCCTGCCGCACCTCCCCACGCCCTCCATCGTCTGTGTCGATCTCCTCGG
TACCGCCTGTTACCCCTTGCTGTTGCCGTCGTCCGGCCTTAATCTTTCAC
TCTAATACCAAACTGTTTTTGACCATTTGACTGGACTATTGGTAAAGTCA
TCTCTACAGTGTAGTGGTGTTGATAGTTGTTTTTCTAACCGCGACGGTGG
TGCCAGCTTGAGCTTGCGCTCTCTGCCCTCCCCCCCCTGGCAGAGGTAGG
GTAAAAGGTTGGTGACCAGAGCGGCTCTTGTATGACCGTGATGAGTTATT
TGCTACAGGCAAATGCAATAGCAACGCTTTGGCACCATGCTGTTTTCTGC
CTCTTGTTGTTGTGGTTATTTTCGCACGAAGTAAGCAAACAATCGACACA
TTCCGCCGAAAAACGGGGTGTGTAGAATACTGCTGTATCTGTTGGCGGGA
ACATGCCTAACGCGCTTGTTTAAATGGCTCTAGGCTAGTTATGTGGGGTC
ACTGCCGTTACGATCATACTTCCATTCACGACAATACCATGTCTGCCTAT
ACAGAGTAGAGCGTGACTTGGCCGAACGGCAATGTCGTCCGCCGTAGTGT
TGTTGTTTCCTACACGTACGTAAAGAAGCCGTTCCGGGCGTTGCGCAGTG
CTACGGACTACGCTGCGCAGTGCTACAGACTACATTCCAGTTTGGGCACC
GACAAGTCGACCCTTGTCGTGGCCATGCCTCGCCTCTTTTCCTTGCTGGT
CGTGCAGCAATTTTAAGATCGCATTTTGGCGCAGACTAGGCGATGTTGAC
GCTCGTCTCTTCTTCTCTCGTGGTGTGGGCGGCCGCGTGGTTCTCTGTTC
TCTGTTCTTGGCCGACCGCTCAGGAGTTGCAGCGGAAGCTTGCCGAGGAG
CAGGTGGCGGCCGCGATGGGTCAAGCGCCACCGGTAACCTCGGTGTCCGC
TGGAGCCGCCGCCTTGGGTCTCACCATGGGAGCGGCCATGCAGGCGCCAG
GGGCTGGAACGAGGACACAGACTGCCCCTGCTCAACCGGTAAGGCCTTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18021:110..3209+

>mRNA_Ecto-sp13_S_contig18021.5528.1 ID=mRNA_Ecto-sp13_S_contig18021.5528.1|Name=mRNA_Ecto-sp13_S_contig18021.5528.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=876bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18021:110..3209+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGACCCTATGGACGTGACCACGGGACCTGTTGTCCCCAATACTGC
CGAAGGTTCTGCTGCCCCCGCTGCCGCGGATCCGGCCCCTGCGAACAACA
ACGGGTCCACCAAAGATAATGCTGCGGCGGCTGCTGCTGCTGCTGTCAAG
CCAACCGGCGACGCCGCCGGCCACGACAATAGCATTGGCAATGCTGCCGT
TGCCCCTACGAAAGAAAACCCGTCGACTGAGGAGCCCTCCGGAGGTGATG
CTGATGCAGCACCGCCGGCTGCACTCGAAGCAGCAGCTGCTCCGGAGGCA
GCAGCCGTAGCCAAGCAAGGCGGAGCGTCTCCCAACGAAAGAGGCGATGG
TGAACCCGCCGATGCCGCCGCCGCCGCCGCCGCTGCTGCTTCTGCTACTG
CCGATGCTCCATCAGATACCAAAGGCGGCGGCGCCAAAGAGGACCCGATG
GAGGAGACCAATGAGGATGTGGAGGCCATGGCCGCGGCGGCCAAATCACT
CGCACAAGCGGCGGCGGCCGCGAGTGCGCCACGCAAGGAGACCACGGAGA
GCGGTGCTGCTGGAGGAGCCGAGCAGCCCAAGAGAAAGCGCACCCGGCGG
GGAGGGTGGGACACGCCTGCTGCCCCCGGCGCTGTGGTCAAGAAAGGGTG
GGGGGACGCACCGCCAGTGGCCCCCGTGGTTCCGATGACCCCCTTGCAGG
AGTTGCAGCGGAAGCTTGCCGAGGAGCAGGTGGCGGCCGCGATGGGTCAA
GCGCCACCGGTAACCTCGGTGTCCGCTGGAGCCGCCGCCTTGGGTCTCAC
CATGGGAGCGGCCATGCAGGCGCCAGGGGCTGGAACGAGGACACAGACTG
CCCCTGCTCAACCGGTAAGGCCTTGA