mRNA_Ecto-sp13_S_contig17972.5492.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17972.5492.1
Unique NamemRNA_Ecto-sp13_S_contig17972.5492.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17972.5492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17972contigEcto-sp13_S_contig17972:811..1277 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size467
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.2345834-UTR-Ecto-sp13_S_contig17972:810..8331681462929.2345834-UTR-Ecto-sp13_S_contig17972:810..833Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17972 811..833 +
1681462929.2516677-UTR-Ecto-sp13_S_contig17972:1244..12771681462929.2516677-UTR-Ecto-sp13_S_contig17972:1244..1277Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17972 1245..1277 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462929.2434764-CDS-Ecto-sp13_S_contig17972:833..12441681462929.2434764-CDS-Ecto-sp13_S_contig17972:833..1244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17972 834..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17972.5492.1prot_Ecto-sp13_S_contig17972.5492.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17972 834..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17972.5492.1

>prot_Ecto-sp13_S_contig17972.5492.1 ID=prot_Ecto-sp13_S_contig17972.5492.1|Name=mRNA_Ecto-sp13_S_contig17972.5492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MFRAGQVSDSRDNEQTQCVPRLLDFLHARMLGVNGCATYFVFRRFVRSVG
VSARYDTRTSGRAENPRHRSSDSFRPSWFCSSAKASLRARRRSFVGEEEG
GCARFSQLALCSGGEGSGYVWLSLRAASCEGRGRGM*
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mRNA from alignment at Ecto-sp13_S_contig17972:811..1277+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17972.5492.1 ID=mRNA_Ecto-sp13_S_contig17972.5492.1|Name=mRNA_Ecto-sp13_S_contig17972.5492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17972:811..1277+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTATTGTTGAAGTTCTCATGCATGTTTCGCGCTGGTCAGGTTTCTGAT
AGCAGGGACAACGAACAAACGCAATGTGTCCCGCGCTTGTTAGATTTTCT
GCATGCACGGATGTTGGGCGTGAACGGATGCGCGACCTACTTTGTCTTCC
GTCGATTCGTTCGTTCTGTCGGGGTTTCAGCACGATACGACACACGTACG
TCCGGTAGGGCGGAGAACCCCCGACACCGTAGCTCTGATTCCTTCCGTCC
CTCATGGTTTTGTAGCTCGGCGAAAGCCAGCTTGCGCGCCCGACGGCGTT
CGTTCGTTGGCGAGGAAGAAGGGGGGTGTGCGCGGTTCAGTCAACTTGCG
CTGTGTTCGGGTGGTGAAGGTTCAGGTTATGTTTGGCTTTCCTTGAGGGC
GGCATCTTGCGAAGGCAGGGGCAGGGGAATGTAACACACACATCCCACCG
AGCGCAAGCGCCCGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17972:811..1277+

>mRNA_Ecto-sp13_S_contig17972.5492.1 ID=mRNA_Ecto-sp13_S_contig17972.5492.1|Name=mRNA_Ecto-sp13_S_contig17972.5492.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17972:811..1277+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTCGCGCTGGTCAGGTTTCTGATAGCAGGGACAACGAACAAACGCA
ATGTGTCCCGCGCTTGTTAGATTTTCTGCATGCACGGATGTTGGGCGTGA
ACGGATGCGCGACCTACTTTGTCTTCCGTCGATTCGTTCGTTCTGTCGGG
GTTTCAGCACGATACGACACACGTACGTCCGGTAGGGCGGAGAACCCCCG
ACACCGTAGCTCTGATTCCTTCCGTCCCTCATGGTTTTGTAGCTCGGCGA
AAGCCAGCTTGCGCGCCCGACGGCGTTCGTTCGTTGGCGAGGAAGAAGGG
GGGTGTGCGCGGTTCAGTCAACTTGCGCTGTGTTCGGGTGGTGAAGGTTC
AGGTTATGTTTGGCTTTCCTTGAGGGCGGCATCTTGCGAAGGCAGGGGCA
GGGGAATGTAA
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