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Homology
BLAST of mRNA_Ecto-sp13_S_contig17943.5476.1 vs. uniprot
Match: D8LBH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH6_ECTSI) HSP 1 Score: 784 bits (2025), Expect = 3.860e-274 Identity = 683/738 (92.55%), Postives = 692/738 (93.77%), Query Frame = 1
Query: 106 MGSEEFDSQAAINTMLNARVGATSIRSQRDAIGSGFADVGNRRRRPSTGTLAGIRAAWGTSMGGSQDDIACPLPETNTSTRNSRLGAVYATGIIEEDEESESEMEEVDPRLFVPGAQGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDKMNVIHNPRVGVNSVRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATVNARFNSRAGVVYSRGGDRYASGHVVRGQPMPAGMRNGRGQPGLGIDQDDLIGYHSTSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRNARXXXXXXXXXXXXXXXXXXXXXXXAIPMRXXXXXXXXXXXXXXXXXXXXXXXXXXSTPTGMXXXXXXXXXXXXXXXXXXX--YGSNKAISATRRHSRSEPRAVEGSGSMGRVKVAGNGAVVGSVRDNANAASGHERGSGGGGRGTAGSDTRGQRSKAXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GAGIVKPAATRRTWEPGQSSVFDSSGSENSDGDGKPRGLRGVQVLDPETPGTDVVSSTGSATIRAGGVSASSSGVWGGRAHDNVVDDDPSRVLGAGVSRSSLRSFPGQEATGGS 2292
MGSEEFDSQAAINT LNARVGATSIRSQRDAIGSGFADVGNRRR PSTGT+AGIRAAWGTSMGGS DDIACPLPETN S RNSR+GAVYATGIIEEDEESESEMEEVDPRLF+PG QGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDK+NVIHNPRVGVNSVRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATVNAR NSRAGVVYSRG DRYASGHVV GQPMPAGMRNGRGQPGLGIDQ D+I YHSTSGR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRNARXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX YGSNKA+SATRRHSRSEPRAVEGSGSMGRVKVAGNGAVVG VRD+ANAA+GHERGSGGGGRGTAGSDTRGQRSKA XXXXXXXXXXXXXXXXXX GAGIVKPAATRRTWEPGQSSVFDSSGSENSDGDGKPRGLRGVQVLDPETPGTDVVSSTGSATIR GGVSASSSG WGGRAHD+VVDDD SRVLGAGVSRSSLRSFPGQEA GGS
Sbjct: 1 MGSEEFDSQAAINTKLNARVGATSIRSQRDAIGSGFADVGNRRRPPSTGTMAGIRAAWGTSMGGSLDDIACPLPETNNSMRNSRVGAVYATGIIEEDEESESEMEEVDPRLFIPGVQGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDKINVIHNPRVGVNSVRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATVNARLNSRAGVVYSRGSDRYASGHVVHGQPMPAGMRNGRGQPGLGIDQHDVIDYHSTSGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRNARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGSNKAVSATRRHSRSEPRAVEGSGSMGRVKVAGNGAVVGRVRDHANAAAGHERGSGGGGRGTAGSDTRGQRSKAAGGAGGQRDXXXXXXXXXXXXXXXXXXXXXXXXGGAGIVKPAATRRTWEPGQSSVFDSSGSENSDGDGKPRGLRGVQVLDPETPGTDVVSSTGSATIRTGGVSASSSGGWGGRAHDSVVDDDGSRVLGAGVSRSSLRSFPGQEANGGS 738
BLAST of mRNA_Ecto-sp13_S_contig17943.5476.1 vs. uniprot
Match: A0A6H5KP28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP28_9PHAE) HSP 1 Score: 598 bits (1542), Expect = 1.180e-189 Identity = 302/325 (92.92%), Postives = 308/325 (94.77%), Query Frame = 1
Query: 1 CPLPSTSEFDAPVPKPDAAARAAEQNRRISWGKSSMGSEEFDSQAAINTMLNARVGATSIRSQRDAIGSGFADVGNRRRRPSTGTLAGIRAAWGTSMGGSQDDIACPLPETNTSTRNSRLGAVYATGIIEEDEESESEMEEVDPRLFVPGAQGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDKMNVIHNPRVGVNSVRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATVNARFNSRAGVVYSRGGDRYASGHVVRGQPMPAGMRNGRGQPGLGIDQDDLIGYHSTSG 975
CP PSTSEFDAPV KPDAAARAAEQNRR+SWG SSM SEEFDSQAAINT LNARVGATSIRSQRDAIGSGFADVGNRRR PSTGTLAGIRAAWGTS+GGSQDDIAC LPET TSTRNSRLGAVYATGIIEEDEE+ESEMEEVDPRLF PG QGNRRR+LSAGTLAGIRAAWGSSLD SQEDIPYTSTDKMNVIHNPRVGVN VRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPAT N R NSRAGVVYSRGGDRYASGHVVRGQPMPAGMRNGRGQPGLGID+DD+IGYH SG
Sbjct: 1095 CPQPSTSEFDAPVSKPDAAARAAEQNRRLSWGNSSMDSEEFDSQAAINTKLNARVGATSIRSQRDAIGSGFADVGNRRRPPSTGTLAGIRAAWGTSIGGSQDDIACRLPETKTSTRNSRLGAVYATGIIEEDEENESEMEEVDPRLFAPGVQGNRRRSLSAGTLAGIRAAWGSSLDGSQEDIPYTSTDKMNVIHNPRVGVNGVRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGNSMGESQDDIACPSPATSNTRLNSRAGVVYSRGGDRYASGHVVRGQPMPAGMRNGRGQPGLGIDEDDVIGYHVASG 1419
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 2433 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Cds size | 2433 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462928.3739924-CDS-Ecto-sp13_S_contig17943:720..1216 | 1681462928.3739924-CDS-Ecto-sp13_S_contig17943:720..1216 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig17943 721..1216 - |
| 1681462928.3840425-CDS-Ecto-sp13_S_contig17943:1643..3580 | 1681462928.3840425-CDS-Ecto-sp13_S_contig17943:1643..3580 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig17943 1644..3580 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17943.5476.1 >prot_Ecto-sp13_S_contig17943.5476.1 ID=prot_Ecto-sp13_S_contig17943.5476.1|Name=mRNA_Ecto-sp13_S_contig17943.5476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=811bp
CPLPSTSEFDAPVPKPDAAARAAEQNRRISWGKSSMGSEEFDSQAAINTM LNARVGATSIRSQRDAIGSGFADVGNRRRRPSTGTLAGIRAAWGTSMGGS QDDIACPLPETNTSTRNSRLGAVYATGIIEEDEESESEMEEVDPRLFVPG AQGNRRRALSAGTLAGIRAAWGSSLDDSQEDIPYTSTDKMNVIHNPRVGV NSVRAHILDDESESENEFVDSRSLMPGIAAGRRRPLGGGTLAGIRAAWGN SMGESQDDIACPSPATVNARFNSRAGVVYSRGGDRYASGHVVRGQPMPAG MRNGRGQPGLGIDQDDLIGYHSTSGRGQSTPTAMRKGKGQSVVGMNHDDI MGYHFASGGGQSIPAGMRSARGQPVVGMNHDDIMGYHFASDGGQSIPAGM RNARGQPGMGIDHDDVVGYRFPSGRGQSMPTGMRGRGQPSVGMNHDDIMG YHRASGRGQSTPTGVRNARGQPGVVMDHDDVVGYHLASGGGQAIPMRNAR GQPGLGIDHDDVVGYHLASGRGQSTPTGMRNGRGQPGVVLDHDDVVGYYG SNKAISATRRHSRSEPRAVEGSGSMGRVKVAGNGAVVGSVRDNANAASGH ERGSGGGGRGTAGSDTRGQRSKAAGGAGGQRDSSGGHSNKIASSGGSAGG GAGIVKPAATRRTWEPGQSSVFDSSGSENSDGDGKPRGLRGVQVLDPETP GTDVVSSTGSATIRAGGVSASSSGVWGGRAHDNVVDDDPSRVLGAGVSRS SLRSFPGQEATGGSTAVSGSAARATAVGNPHLEMRGGVHARGQGMGDGGV YEFSFPRTRE* back to topmRNA from alignment at Ecto-sp13_S_contig17943:721..3580- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig17943.5476.1 ID=mRNA_Ecto-sp13_S_contig17943.5476.1|Name=mRNA_Ecto-sp13_S_contig17943.5476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2860bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17943:721..3580- (Ectocarpus species13 EcNAP12_S_4_19m) TGTCCGCTACCGTCCACGAGCGAGTTTGATGCACCAGTGCCAAAACCCGA
CGCCGCCGCCCGTGCAGCTGAGCAGAACCGACGCATCTCGTGGGGCAAAA
GTTCCATGGGCAGCGAGGAGTTTGATTCGCAGGCAGCGATCAACACAATG
TTGAACGCGAGGGTAGGAGCCACCAGTATCAGAAGTCAACGCGACGCAAT
CGGATCGGGGTTCGCAGATGTAGGAAACCGCCGGCGGCGTCCGTCGACAG
GCACACTGGCCGGGATCCGTGCTGCCTGGGGCACCTCTATGGGCGGGAGC
CAGGACGATATCGCCTGTCCCCTACCGGAGACCAACACCTCAACGCGAAA
CTCGAGGTTGGGCGCCGTCTATGCCACGGGCATCATCGAGGAAGACGAGG
AAAGCGAGAGCGAGATGGAAGAGGTTGACCCGCGTTTGTTCGTACCCGGG
GCTCAAGGCAACCGCCGGCGAGCATTGTCCGCGGGCACGCTTGCAGGGAT
CCGCGCCGCGTGGGGCTCATCGCTGGACGACAGCCAAGAGGACATCCCGT
ATACCTCAACCGACAAGATGAACGTAATCCATAACCCCAGGGTGGGTGTC
AACAGCGTCCGGGCCCACATTCTGGATGATGAGAGCGAGAGCGAGAACGA
ATTCGTTGACTCACGTTCGCTAATGCCCGGCATTGCAGCCGGCCGGCGAC
GACCACTGGGAGGAGGCACGCTCGCGGGTATCCGTGCCGCCTGGGGGAAC
TCTATGGGCGAGAGCCAGGACGACATCGCGTGCCCATCCCCCGCGACGGT
AAACGCACGCTTCAATTCCAGAGCTGGTGTGGTCTATTCGAGAGGCGGCG
ACCGTTATGCCAGCGGCCACGTCGTCCGTGGGCAGCCGATGCCCGCAGGC
ATGCGCAACGGAAGGGGCCAACCCGGCTTGGGAATCGACCAAGACGATCT
TATCGGCTACCACAGCACCTCCGGTCGCGGGCAATCGACGCCCACAGCCA
TGCGCAAAGGAAAAGGCCAGTCCGTCGTGGGAATGAATCACGATGATATA
ATGGGCTACCACTTTGCCTCCGGCGGTGGGCAGTCGATTCCCGCAGGCAT
GCGCAGCGCAAGGGGCCAGCCGGTCGTGGGAATGAATCACGATGATATTA
TGGGCTACCACTTTGCCTCCGACGGTGGGCAGTCGATTCCCGCAGGCATG
CGAAACGCAAGGGGCCAACCCGGTATGGGAATCGATCATGATGATGTTGT
CGGCTACCGCTTTCCCTCCGGTCGTGGGCAATCGATGCCAACAGGCATGC
GAGGAAGGGGCCAGCCCAGCGTGGGAATGAATCACGATGATATTATGGGC
TACCACCGTGCCTCTGGTCGTGGGCAATCGACGCCCACAGGTGTTCGCAA
CGCAAGAGGCCAGCCAGGCGTGGTAATGGATCACGACGATGTTGTCGGTT
ACCACCTTGCCTCCGGCGGTGGGCAAGCGATTCCCATGCGCAACGCAAGA
GGCCAGCCCGGCTTGGGAATCGATCACGATGATGTTGTCGGCTACCACCT
TGCCTCCGGCCGTGGGCAATCGACGCCCACAGGCATGCGCAACGGAAGGG
GGCAGCCCGGCGTGGTATTGGATCACGATGATGTTGTCGGCTACTACGGT
TCGAACAAAGCCATTTCTGCGACGCGAAGGCACTCGCGGAGCGAACCCCG
CGCGGTCGAAGGCAGCGGCAGCATGGGGCGGGTCAAGGTCGCGGGCAACG
GGGCTGTCGTCGGCAGTGTCCGCGACAATGCGAATGCTGCATCTGGTCAC
GAACGGGGCAGTGGTGGCGGTGGACGGGGCACTGCAGGCAGTGACACCCG
TGGTCAACGGAGTAAGGCAGCTGGTGGCGCTGGCGGTCAGCGGGACAGTT
CTGGCGGACACAGTAATAAGATTGCAAGCAGCGGCGGGTTGAAACATAAT
TAAAATGTAATAAATGGCGGGGGGTGTTTAAACATAATTTAATTTTTTTT
GTTTTTTTTTTTCCTCCCCCCCCCCCCCCCCCTTGTATTTCTGCGTGATG
GAGAGTTGGTGTAAAGGCCTTTCATTCGCGTACGACACTCTGCCCAACCT
CCGCATCACTTTTTTCACGTGTCTCGAGTCTTGCTCTACCGCATAACACG
CTCTCGTTCTCGTTTGCAAACGGTGTGATGTTGCGAGCTTGTCCAGTTTG
TCAGGTTGGAACTTGAAACTTGGTCGTCAGCGTGGGCAGCCAGCCAGTGA
TTTCATATGCAACCATGGTCGGTTTCGACTGCTCGCGTTACCTACCGGCC
AAGCGCTTGGTTTTCGTTTTGAACGAGAAACTTGTTGCCTTCTGGTGACA
CCCGCGGCAGGCAGAAGCGCTGGTGGTGGCGCAGGCATCGTCAAACCGGC
AGCAACCCGGCGGACCTGGGAACCCGGGCAGAGCAGCGTGTTCGACTCGT
CTGGAAGCGAAAACAGCGACGGCGACGGGAAGCCTCGGGGGCTCCGCGGC
GTGCAAGTCTTAGACCCAGAGACCCCAGGCACCGACGTCGTGAGCAGCAC
CGGAAGTGCTACGATCCGCGCGGGAGGAGTGTCCGCGAGCAGCTCGGGAG
TTTGGGGTGGCCGTGCACATGACAATGTCGTCGACGACGACCCTTCTCGC
GTGCTGGGAGCAGGCGTGTCAAGAAGCAGCCTCAGGTCTTTTCCAGGCCA
GGAGGCAACCGGCGGGTCCACGGCGGTGAGCGGCTCTGCAGCCCGCGCCA
CGGCTGTTGGCAATCCGCACCTGGAGATGCGCGGAGGGGTGCACGCCCGC
GGCCAAGGGATGGGTGACGGAGGCGTTTACGAGTTTTCGTTCCCGCGAAC
ACGGGAATAA back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig17943:721..3580- >mRNA_Ecto-sp13_S_contig17943.5476.1 ID=mRNA_Ecto-sp13_S_contig17943.5476.1|Name=mRNA_Ecto-sp13_S_contig17943.5476.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2433bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17943:721..3580- (Ectocarpus species13 EcNAP12_S_4_19m) TGTCCGCTACCGTCCACGAGCGAGTTTGATGCACCAGTGCCAAAACCCGA CGCCGCCGCCCGTGCAGCTGAGCAGAACCGACGCATCTCGTGGGGCAAAA GTTCCATGGGCAGCGAGGAGTTTGATTCGCAGGCAGCGATCAACACAATG TTGAACGCGAGGGTAGGAGCCACCAGTATCAGAAGTCAACGCGACGCAAT CGGATCGGGGTTCGCAGATGTAGGAAACCGCCGGCGGCGTCCGTCGACAG GCACACTGGCCGGGATCCGTGCTGCCTGGGGCACCTCTATGGGCGGGAGC CAGGACGATATCGCCTGTCCCCTACCGGAGACCAACACCTCAACGCGAAA CTCGAGGTTGGGCGCCGTCTATGCCACGGGCATCATCGAGGAAGACGAGG AAAGCGAGAGCGAGATGGAAGAGGTTGACCCGCGTTTGTTCGTACCCGGG GCTCAAGGCAACCGCCGGCGAGCATTGTCCGCGGGCACGCTTGCAGGGAT CCGCGCCGCGTGGGGCTCATCGCTGGACGACAGCCAAGAGGACATCCCGT ATACCTCAACCGACAAGATGAACGTAATCCATAACCCCAGGGTGGGTGTC AACAGCGTCCGGGCCCACATTCTGGATGATGAGAGCGAGAGCGAGAACGA ATTCGTTGACTCACGTTCGCTAATGCCCGGCATTGCAGCCGGCCGGCGAC GACCACTGGGAGGAGGCACGCTCGCGGGTATCCGTGCCGCCTGGGGGAAC TCTATGGGCGAGAGCCAGGACGACATCGCGTGCCCATCCCCCGCGACGGT AAACGCACGCTTCAATTCCAGAGCTGGTGTGGTCTATTCGAGAGGCGGCG ACCGTTATGCCAGCGGCCACGTCGTCCGTGGGCAGCCGATGCCCGCAGGC ATGCGCAACGGAAGGGGCCAACCCGGCTTGGGAATCGACCAAGACGATCT TATCGGCTACCACAGCACCTCCGGTCGCGGGCAATCGACGCCCACAGCCA TGCGCAAAGGAAAAGGCCAGTCCGTCGTGGGAATGAATCACGATGATATA ATGGGCTACCACTTTGCCTCCGGCGGTGGGCAGTCGATTCCCGCAGGCAT GCGCAGCGCAAGGGGCCAGCCGGTCGTGGGAATGAATCACGATGATATTA TGGGCTACCACTTTGCCTCCGACGGTGGGCAGTCGATTCCCGCAGGCATG CGAAACGCAAGGGGCCAACCCGGTATGGGAATCGATCATGATGATGTTGT CGGCTACCGCTTTCCCTCCGGTCGTGGGCAATCGATGCCAACAGGCATGC GAGGAAGGGGCCAGCCCAGCGTGGGAATGAATCACGATGATATTATGGGC TACCACCGTGCCTCTGGTCGTGGGCAATCGACGCCCACAGGTGTTCGCAA CGCAAGAGGCCAGCCAGGCGTGGTAATGGATCACGACGATGTTGTCGGTT ACCACCTTGCCTCCGGCGGTGGGCAAGCGATTCCCATGCGCAACGCAAGA GGCCAGCCCGGCTTGGGAATCGATCACGATGATGTTGTCGGCTACCACCT TGCCTCCGGCCGTGGGCAATCGACGCCCACAGGCATGCGCAACGGAAGGG GGCAGCCCGGCGTGGTATTGGATCACGATGATGTTGTCGGCTACTACGGT TCGAACAAAGCCATTTCTGCGACGCGAAGGCACTCGCGGAGCGAACCCCG CGCGGTCGAAGGCAGCGGCAGCATGGGGCGGGTCAAGGTCGCGGGCAACG GGGCTGTCGTCGGCAGTGTCCGCGACAATGCGAATGCTGCATCTGGTCAC GAACGGGGCAGTGGTGGCGGTGGACGGGGCACTGCAGGCAGTGACACCCG TGGTCAACGGAGTAAGGCAGCTGGTGGCGCTGGCGGTCAGCGGGACAGTT CTGGCGGACACAGTAATAAGATTGCAAGCAGCGGCGGAAGCGCTGGTGGT GGCGCAGGCATCGTCAAACCGGCAGCAACCCGGCGGACCTGGGAACCCGG GCAGAGCAGCGTGTTCGACTCGTCTGGAAGCGAAAACAGCGACGGCGACG GGAAGCCTCGGGGGCTCCGCGGCGTGCAAGTCTTAGACCCAGAGACCCCA GGCACCGACGTCGTGAGCAGCACCGGAAGTGCTACGATCCGCGCGGGAGG AGTGTCCGCGAGCAGCTCGGGAGTTTGGGGTGGCCGTGCACATGACAATG TCGTCGACGACGACCCTTCTCGCGTGCTGGGAGCAGGCGTGTCAAGAAGC AGCCTCAGGTCTTTTCCAGGCCAGGAGGCAACCGGCGGGTCCACGGCGGT GAGCGGCTCTGCAGCCCGCGCCACGGCTGTTGGCAATCCGCACCTGGAGA TGCGCGGAGGGGTGCACGCCCGCGGCCAAGGGATGGGTGACGGAGGCGTT TACGAGTTTTCGTTCCCGCGAACACGGGAATAA back to top
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