mRNA_Ecto-sp13_S_contig17916.5464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17916.5464.1
Unique NamemRNA_Ecto-sp13_S_contig17916.5464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17916.5464.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 3.200e-63
Identity = 130/142 (91.55%), Postives = 133/142 (93.66%), Query Frame = 2 
Query:   23 QSVPVYARRLRLTVSENEEAYFFAPNEEPLDRNRRDWVSKRRAEGAAARRKLSAVPTVANGDGGEQNAFDDALPGDYYYDNEKASFDLGDDVVGDEEAEVEDGSYTSGASXXXXXXXXXX-LEQEIQALAGNLDGFSDPSST 445
            QSVPVYARRLRLTVSE+EEAYFFAPNEEPLDRNRRDWVSKRRAE AAARRKLSAVPT ANGDGGEQNAFDDALPGDYY D+EKASFDLGDDVVGDEEAEVED SY SG  XXXXXXXXXX LEQEIQALAGNLDGFSD S+T
Sbjct: 1942 QSVPVYARRLRLTVSEDEEAYFFAPNEEPLDRNRRDWVSKRRAEEAAARRKLSAVPTAANGDGGEQNAFDDALPGDYY-DDEKASFDLGDDVVGDEEAEVEDDSYASGXXXXXXXXXXXXXLEQEIQALAGNLDGFSDASTT 2082
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BLAST of mRNA_Ecto-sp13_S_contig17916.5464.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 7.560e-58
Identity = 120/139 (86.33%), Postives = 129/139 (92.81%), Query Frame = 2 
Query:   23 QSVPVYARRLRLTVSENEEAYFFAPNEEPLDRNRRDWVSKRRAEGAAARRKLSAVPTVANGDGGEQNAFDDALPGDYYYDNEKASFDLGDDVVGDEEAEVEDGSYTSGASXXXXXXXXXX--LEQEIQALAGNLDGFSD 433
            QSVPVYARRLRLTVSENEEAYFFAPNEEPLD +RRDWVSKRRAE AA+RRKLSAVP VANGDGGEQNAFDDALPGD+Y D++ AS+DLGDDVVGDEEA+VE+GS+ SG  XXXXXXXXXX  LEQEIQALAGNLDGFSD
Sbjct:  951 QSVPVYARRLRLTVSENEEAYFFAPNEEPLDHHRRDWVSKRRAEEAASRRKLSAVPAVANGDGGEQNAFDDALPGDHY-DDDNASYDLGDDVVGDEEADVEEGSHASGXXXXXXXXXXXXXXLEQEIQALAGNLDGFSD 1088
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17916.5464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE3.200e-6391.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME4_ECTSI7.560e-5886.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17916contigEcto-sp13_S_contig17916:1997..3352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size449
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.648739-UTR-Ecto-sp13_S_contig17916:1996..21491681462927.648739-UTR-Ecto-sp13_S_contig17916:1996..2149Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17916 1997..2149 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.6597562-CDS-Ecto-sp13_S_contig17916:2149..22501681462927.6597562-CDS-Ecto-sp13_S_contig17916:2149..2250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17916 2150..2250 -
1681462927.669879-CDS-Ecto-sp13_S_contig17916:3159..33521681462927.669879-CDS-Ecto-sp13_S_contig17916:3159..3352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17916 3160..3352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17916.5464.1prot_Ecto-sp13_S_contig17916.5464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17916 2150..3352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17916.5464.1

>prot_Ecto-sp13_S_contig17916.5464.1 ID=prot_Ecto-sp13_S_contig17916.5464.1|Name=mRNA_Ecto-sp13_S_contig17916.5464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
KHRPHKRTVRAGVCTSATADGFRERGGVFLRAQRGTAGPQQEGLGVEEAG
RGSGRQEKALGGADGGERRRRRAERLRRRSSRRLLLRQREGVLRSGR*
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mRNA from alignment at Ecto-sp13_S_contig17916:1997..3352-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17916.5464.1 ID=mRNA_Ecto-sp13_S_contig17916.5464.1|Name=mRNA_Ecto-sp13_S_contig17916.5464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1356bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17916:1997..3352- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACCGACCGCACAAACGAACAGTCCGTGCCGGTGTATGCACGTCGGC
TACGGCTGACGGTTTCCGAGAACGAGGAGGCGTATTTCTTCGCGCCCAAC
GAGGAACCGCTGGACCGCAACAGGAGGGACTGGGTGTCGAAGAGGCGGGC
CGAGGGAGCGGCCGCCAGGAGAAAGCTCTCGGCGGTGCCGACGGTATGTA
CAGTTTTGGCATGCGTTTGTGTGTGCCTGTCTGTCTGTCTGTCTTGCCTG
TCTGTTTGCCTTTCTGTCTGTCCGTCTGTCTGTCTGTCCGTCTGTCTGTC
TGTCTGTCTGTCTGTTTGCCTGCTATCTATTGTCTACCATGTTGTTGTCC
GTCTCCGTGTCTGTCCGTAGGTGTTAGAAGTATAAGATATTACACCAACC
GGACCGATTTCCACAGCTCGGTTGCTCCTCGGCAGAGAGAGTGGCGATGC
TAAAAAATGGCGGCGCTAGAGCCGTATCGTCTACAGCTTTTTGGAAACGT
ATCATCTGAGTTTGGAACTCTGTTCGTCGTGGAGTATTCGAGCTGTCCAA
ATGGGTCCAGGGGGTGTGATATCTCACGTAACGTACGGTAACCTACCTTC
GTGTTGTTCCAAGTTTGCGTGAAAACAGAAGAGCTGCAAGTTCGCCTTTG
AGCGTGGCATGGCATACCGGCCGAACAGCCGTCATTCGCACAACCAGGCA
CGACGTGATATATTTCAGAACTTTCGTTGAGAAGCGCTCATCTTGTAGCA
TTTTCTTTTGTGTTTATTTCTACATAACACAACGAACTCATCCCTATCCA
CAAAGAAAGAGTCCGGGATAAAATAGCTTTGGATCAATATAGGGTTAGCG
TCGTGCAAAACTCCCACCGGATAGCGTGGGCTGTTGATGTGTGAATGAAT
GATGTATCGTTTTCTTACGAGGATGATGTATCGGTTTTTCACGAGGCAGA
GACTGTACGAGAGTGATCTCGGAGAGAACACACGCGTCACGCACACAACA
CGCAATCCAAAAGTCAAGCTACTCGAAGAACAGACGACCGAACCGACGCG
AAACCGTCAGAGTCACTGTCGACACCACCGTTGCCGTTTTTTTGGGGGTC
AGGTGGCGAACGGCGACGGCGGAGAGCAGAACGCCTTCGACGACGCTCTT
CCCGGAGACTACTACTACGACAACGAGAAGGCGTCCTTCGATCTGGGAGA
TGATGTCGTCGGGGACGAGGAGGCGGAGGTGGAAGACGGCTCGTACACGA
GCGGGGCAAGTGGCGGCGACGGCGGCGGCGGTATCGGTGGGCTGGAGCAG
GAGATCCAGGCCTTGGCCGGAAACCTGGACGGCTTTTCGGACCCCAGCAG
CACCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17916:1997..3352-

>mRNA_Ecto-sp13_S_contig17916.5464.1 ID=mRNA_Ecto-sp13_S_contig17916.5464.1|Name=mRNA_Ecto-sp13_S_contig17916.5464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17916:1997..3352- (Ectocarpus species13 EcNAP12_S_4_19m)
AAACACCGACCGCACAAACGAACAGTCCGTGCCGGTGTATGCACGTCGGC
TACGGCTGACGGTTTCCGAGAACGAGGAGGCGTATTTCTTCGCGCCCAAC
GAGGAACCGCTGGACCGCAACAGGAGGGACTGGGTGTCGAAGAGGCGGGC
CGAGGGAGCGGCCGCCAGGAGAAAGCTCTCGGCGGTGCCGACGGTGGCGA
ACGGCGACGGCGGAGAGCAGAACGCCTTCGACGACGCTCTTCCCGGAGAC
TACTACTACGACAACGAGAAGGCGTCCTTCGATCTGGGAGATGA
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