mRNA_Ecto-sp13_S_contig17908.5460.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 195 bits (496), Expect = 2.320e-49 Identity = 104/166 (62.65%), Postives = 119/166 (71.69%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDSNMPVNKASWPASLRRLSFGTAFNR 490
G S CLDAFVVALNQAC G RWY STLELQLVSL +CGACR V TLH+RV QTPP LW HTT N +P+V ISSRVP V++FGLT+ALPM L Q S E+ SGS C + SSAA L S VWP L +VF+S+M VN ASWPASL++LSFG FN+
Sbjct: 5 GNSKCLDAFVVALNQACDGQEKRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQ 170
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 176 bits (445), Expect = 6.390e-45 Identity = 96/167 (57.49%), Postives = 119/167 (71.26%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVW-PPMLTSLVFDSNMPVNKASWPASLRRLSFGTAFNR 490
GRS CL AF+VALNQ C G RWYASTLELQLVSL CGACR VPTLH+RV+RQTP LW C H T K + E +S+RVPAV++ GLT+AL M+ L+Q+S +EL S S+ +++ SS A L S+ W ML LVFDS+MP + ASWPASL +L FG F++
Sbjct: 13 GRSECLRAFIVALNQTCNGQEKRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 145 bits (365), Expect = 6.390e-33 Identity = 86/166 (51.81%), Postives = 102/166 (61.45%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYGR---WYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDSNMPVNKASWPASLRRLSFGTAFNR 490
GRS CLDAF+VAL QA GR WY STLELQLVSL CGACRS + ++++RQTP LW H T K + E I SRVPAV++ G +ALPM+ L+ S EL SE Q T PSSA + W LT L+F S VN SWPA L+ LSFG FN+
Sbjct: 25 GRSECLDAFIVALKQAGDGRAKRWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWALPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQ 190
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 132 bits (332), Expect = 3.580e-31 Identity = 79/151 (52.32%), Postives = 91/151 (60.26%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDSNMPVNKASW 445
G LD +VALNQAC G RWY STLELQLVSL LCGACRS LH+ V TPP LW T TTP++ +PEV S+RVPAV++ T+ALPMD L Q + E +E S AA + SVVWP L LVF MP KA W
Sbjct: 85 GGGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSSRTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWPESLKRLVFSRRMP-GKAVW 234
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 125 bits (313), Expect = 1.400e-29 Identity = 71/146 (48.63%), Postives = 90/146 (61.64%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDSNMPV 430
G + DAF +AL+QAC G RWY ST ELQL SL +C ACRS PTLH+RV TP LW T PN + +VR+ SRVP V + LT+A M+ L+Q + +EL S SE ++ P AA L SVVWP LT LV D++ +
Sbjct: 5 GYTRSFDAFAIALSQACEGGEKRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQALPNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWPLGLTQLVLDTDFHI 150
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 124 bits (312), Expect = 7.590e-28 Identity = 79/166 (47.59%), Postives = 97/166 (58.43%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDSNMPVNKASWPASLRRLSFGTAFNR 490
GR C+DAF+VALN+ C G RWYASTLELQ VSL C ACR VPT H + T RL V SR P V ++ LT+AL MD L+QS +EL GS+ + SSAA L S++W L LV + + PV ASWPASL++LSFG FN+
Sbjct: 15 GRGECVDAFIVALNRTCDGGEQRWYASTLELQPVSLEFCVACRRVPTSH---STSTVGRL----------------VSGVSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 127 bits (320), Expect = 7.890e-28 Identity = 76/165 (46.06%), Postives = 99/165 (60.00%), Query Frame = 2
Query: 14 CLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDSNM---PVNKASWPASLRRLSFGTAFNR 490
CLDAFVVAL+Q G RWY STL+LQL SL CGACRS P LH+ V+ +TPP LW L ++ P S+RVPAV++ GLT+A P + + S++ EL + E QL A L SVVWP L LV D + P+ SWP+SL+ L+F F++
Sbjct: 9 CLDAFVVALSQCYEGGEKRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSL-------GQANPTAGTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLEMMSWPSSLKSLTFAGIFDQ 166
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 121 bits (303), Expect = 6.490e-25 Identity = 72/146 (49.32%), Postives = 93/146 (63.70%), Query Frame = 2
Query: 5 RSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRS-VVWPPMLTSLVFDSNMPV 430
R+ CLDAFV+AL+QAC G RWYASTLELQL SL LC ACR+ LH+ V+ QTP LW T T PN + + ISSRVP V + LT+AL M+ L++ + +EL + SE +L S + L S VVWP LT LV ++ +
Sbjct: 8 RTRCLDAFVIALSQACEGGEKRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSSRTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSSCVSSLGSEVVWPRGLTQLVLYTDSDI 153
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 5.250e-20 Identity = 50/69 (72.46%), Postives = 54/69 (78.26%), Query Frame = 2
Query: 5 RSGCLDAFVVALNQACYG---RWYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTP 202
RS CLDAFVVALNQ C G RWYASTLELQLVSL CGACR VPTLH+RV+R+TP LW +P TTP
Sbjct: 38 RSKCLDAFVVALNQTCDGQEKRWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLW---SPRTTP 103
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.540e-19 Identity = 66/173 (38.15%), Postives = 88/173 (50.87%), Query Frame = 2
Query: 2 GRSGCLDAFVVALNQACYGR---WYASTLELQLVSLALCGACRSVPTLHMRVNRQTPPRLWPLCTPHTTPNKS-------------------------------TPEVRISSRVPAVESFGLTFALPMDFLMQSSTLELGSGSECGQLTEPSSAACLRSVVWPPMLTSLVFDS 418
G S DA ++A++QA GR WY STLEL+L SL C ACR VPT+H+RV+ TPP LW +PH P ++ + RISSRVP ++ GLT+ALP + L+Q +EL + E QL E S + L SV WP L L ++
Sbjct: 5 GASRGFDALIIAISQAYEGRGKRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLW---SPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWTKLEFLQLRESLSPSDLVSVAWPQNLKRLALET 174 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17908.5460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17908.5460.1 >prot_Ecto-sp13_S_contig17908.5460.1 ID=prot_Ecto-sp13_S_contig17908.5460.1|Name=mRNA_Ecto-sp13_S_contig17908.5460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp MRVNRQTPPRLWPLCTPHTTPNKSTPEVRISSRVPAVESFGLTFALPMDFback to top mRNA from alignment at Ecto-sp13_S_contig17908:112..2369+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17908.5460.1 ID=mRNA_Ecto-sp13_S_contig17908.5460.1|Name=mRNA_Ecto-sp13_S_contig17908.5460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17908:112..2369+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17908:112..2369+ >mRNA_Ecto-sp13_S_contig17908.5460.1 ID=mRNA_Ecto-sp13_S_contig17908.5460.1|Name=mRNA_Ecto-sp13_S_contig17908.5460.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17908:112..2369+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |