mRNA_Ecto-sp13_S_contig17904.5458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17904.5458.1
Unique NamemRNA_Ecto-sp13_S_contig17904.5458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17904.5458.1 vs. uniprot
Match: D7FZU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZU3_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 2.140e-138
Identity = 266/308 (86.36%), Postives = 273/308 (88.64%), Query Frame = 1 
Query:  247 CLRRVGGAETGLAGIEAGLRAFSERVGRLETFGRAGPEQRSTEEEGQQAGGRAGEDDDEPEDVSTDLAGGAEAAATSGERTCRSPGRRHEAAAHDNDHVSADTGLDVGKERDPLSHANPWEYLRAGPPPSSSLPFHKQGGRHGLDLAERIHLLEAQVFPAISPPPPPLPVVATAAVHTGTAFSDPTKKAFSHSNGVRSAAVAQQGEGSRAAAVRGGDARRGTEPSAREERMRAIIGGLASLSTALLERLITAEGRLRNAAXXXXXXXXXXXXXXXXXXXXVDG--TDVFCQKARLMVAQAEAFLVLAS 1164
            C RRVGGAETGLAGI+AGLRAFSERVGRLETFGRAGPEQRST  EGQ  GGRAGEDDD+PEDVS  LAGGAEAAATSGERTCRSPGRRHEAAAHDNDHVSADTGLDVGKERDPL+HANPWEY RAGPPPSSSLPFHKQGGR GLDLAERIHLLEAQVFPA SP         TAAV TG A S+PTKKAFS ++GVR AAV QQGE  RAAAVRGGDARRGTEPSAREERMRAIIG L SLS+ LLERLITAEGRLRNAAXXXXXXXXXXXXXXXXXXXX     TDVFCQKARLMVAQAEAFLVLAS
Sbjct:  462 CRRRVGGAETGLAGIKAGLRAFSERVGRLETFGRAGPEQRSTAGEGQPEGGRAGEDDDQPEDVSAGLAGGAEAAATSGERTCRSPGRRHEAAAHDNDHVSADTGLDVGKERDPLNHANPWEYHRAGPPPSSSLPFHKQGGRDGLDLAERIHLLEAQVFPASSPXXXXXXXAVTAAVETGAAVSNPTKKAFSRNDGVRRAAVVQQGERPRAAAVRGGDARRGTEPSAREERMRAIIGDLTSLSSVLLERLITAEGRLRNAAXXXXXXXXXXXXXXXXXXXXXXXXXTDVFCQKARLMVAQAEAFLVLAS 769
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BLAST of mRNA_Ecto-sp13_S_contig17904.5458.1 vs. uniprot
Match: A0A6H5KJ46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ46_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 7.390e-133
Identity = 246/301 (81.73%), Postives = 256/301 (85.05%), Query Frame = 1 
Query:  253 RRVGGAETGLAGIEAGLRAFSERVGRLETFGRAGPEQRSTEEEGQQAGGRAGEDDDEPEDVSTDLAGGAEAAATSGERTCRSPGRRHEAAAHDNDHVSADTGLDVGKERDPLSHANPWEYLRAGPPPSSSLPFHKQGGRHGLDLAERIHLLEAQVFPAISPPPPPLPVVATAAVHTGTAFSDPTKKAFSHSNGVRSAAVAQQGEGSRAAAVRGGDARRGTEPSAREERMRAIIGGLASLSTALLERLITAEGRLRNAAXXXXXXXXXXXXXXXXXXXXVDGTDVFCQKARLMVAQAEAFLV 1155
            RRVGGAETGLA I+AGLRAFSERVGRLETFGRA PEQRST  EGQQAGGRAGE+DD+PEDVST LAGGAEAAAT+ ERTCRS GRRHE AAHDNDHVSADTG+D+GKERDPLSHANP EY RA PPPSSSLPFHKQGGRHGLDLAERIHLLEAQVFPA+SP      VV TA V TG   SDPTK+AFSHS+GV+SAAV QQGE SRAAAVRGGDARRGTEP AREERMRAIIG LASLS ALLERLITAEGRLRNAAXXXXXXXX                DV CQKARLMVAQAEAFLV
Sbjct:  381 RRVGGAETGLASIKAGLRAFSERVGRLETFGRADPEQRSTAGEGQQAGGRAGENDDQPEDVSTGLAGGAEAAATASERTCRSAGRRHEVAAHDNDHVSADTGIDMGKERDPLSHANPREYHRARPPPSSSLPFHKQGGRHGLDLAERIHLLEAQVFPAMSPXXXXXQVVETAPVETGAVLSDPTKRAFSHSDGVKSAAVVQQGEQSRAAAVRGGDARRGTEPLAREERMRAIIGDLASLSAALLERLITAEGRLRNAAXXXXXXXX----------------DVLCQKARLMVAQAEAFLV 665
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17904.5458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZU3_ECTSI2.140e-13886.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJ46_9PHAE7.390e-13381.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17904contigEcto-sp13_S_contig17904:6..1667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1536
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_002970.1
Cds size1536
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462927.125453-CDS-Ecto-sp13_S_contig17904:5..1451681462927.125453-CDS-Ecto-sp13_S_contig17904:5..145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17904 6..145 -
1681462927.13442-CDS-Ecto-sp13_S_contig17904:271..16671681462927.13442-CDS-Ecto-sp13_S_contig17904:271..1667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17904 272..1667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17904.5458.1prot_Ecto-sp13_S_contig17904.5458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17904 6..1667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17904.5458.1

>prot_Ecto-sp13_S_contig17904.5458.1 ID=prot_Ecto-sp13_S_contig17904.5458.1|Name=mRNA_Ecto-sp13_S_contig17904.5458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=512bp
DEVTITVYAGGGSGGGGDDGGDDESTRAAAAAAANRGRATPSSSEGNDAG
DGGKGGGSGPDDGGGLVESTRGLGGGGGKGGGCLRRVGGAETGLAGIEAG
LRAFSERVGRLETFGRAGPEQRSTEEEGQQAGGRAGEDDDEPEDVSTDLA
GGAEAAATSGERTCRSPGRRHEAAAHDNDHVSADTGLDVGKERDPLSHAN
PWEYLRAGPPPSSSLPFHKQGGRHGLDLAERIHLLEAQVFPAISPPPPPL
PVVATAAVHTGTAFSDPTKKAFSHSNGVRSAAVAQQGEGSRAAAVRGGDA
RRGTEPSAREERMRAIIGGLASLSTALLERLITAEGRLRNAAAAGGGGFH
GNDGGCGGGGGGVDGTDVFCQKARLMVAQAEAFLVLASTGDDAATAQPPA
PPPTTTTQDTQGGEKAVAPSADDASTGITTAALALPEGGAAPLRSGQSMV
IPALLCPPPPPLPRQAKPPGAAGSPARPSSPQPPPAAAVAAMPLSGRANG
GENPLAIRRRRR
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mRNA from alignment at Ecto-sp13_S_contig17904:6..1667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17904.5458.1 ID=mRNA_Ecto-sp13_S_contig17904.5458.1|Name=mRNA_Ecto-sp13_S_contig17904.5458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17904:6..1667- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAAGTGACCATCACCGTATATGCGGGAGGCGGGAGCGGTGGCGGCGG
CGATGACGGCGGTGACGACGAGAGCACTCGCGCTGCCGCCGCCGCCGCTG
CTAACCGAGGCCGTGCCACACCCAGCAGCAGCGAGGGCAACGACGCGGGT
GACGGAGGGAAAGGTGGCGGCAGCGGGCCGGACGACGGCGGAGGCCTGGT
GGAATCGACCCGTGGCTTGGGCGGGGGCGGAGGCAAGGGCGGTGGTTGTC
TCCGACGGGTCGGCGGAGCCGAAACGGGCCTGGCCGGCATCGAGGCGGGC
CTCCGGGCCTTCAGCGAGAGAGTCGGGCGCCTGGAGACCTTCGGCAGGGC
GGGCCCAGAGCAGAGGAGCACGGAAGAGGAGGGGCAGCAGGCAGGGGGTC
GGGCAGGCGAGGACGACGACGAGCCTGAAGACGTTTCGACGGATCTTGCG
GGAGGAGCAGAAGCAGCAGCGACCTCGGGCGAGCGGACGTGCCGGAGCCC
TGGCCGCCGCCACGAGGCCGCCGCCCACGACAACGACCACGTTTCCGCGG
ATACCGGGCTCGACGTGGGCAAGGAACGCGACCCTCTCAGCCATGCAAAT
CCTTGGGAGTACCTCCGCGCGGGGCCTCCCCCCTCCTCATCGTTGCCCTT
CCACAAGCAGGGCGGCAGGCATGGGCTCGATCTGGCAGAACGAATCCATC
TCCTGGAAGCTCAGGTTTTCCCGGCGATTTCGCCTCCTCCACCACCACTC
CCAGTCGTCGCAACCGCGGCCGTGCATACCGGTACAGCATTTTCCGATCC
AACCAAGAAGGCGTTCTCCCACAGCAACGGTGTCAGGAGCGCGGCCGTCG
CCCAGCAGGGAGAAGGCTCGCGGGCGGCGGCGGTGCGGGGGGGGGACGCG
CGGCGAGGAACGGAGCCGTCGGCGAGGGAGGAGCGCATGCGGGCGATTAT
TGGCGGTCTGGCGTCTCTGTCTACCGCCCTCCTGGAGCGCTTGATCACGG
CCGAGGGCCGCCTTCGGAACGCTGCCGCCGCGGGCGGCGGCGGCTTCCAC
GGCAACGACGGCGGGTGTGGCGGCGGTGGCGGCGGCGTCGACGGCACGGA
TGTGTTTTGCCAGAAGGCGCGCCTGATGGTAGCGCAGGCGGAGGCGTTCT
TGGTCCTGGCGAGCACCGGCGACGATGCGGCCACGGCACAACCACCGGCG
CCGCCGCCGACGACGACGACGCAGGATACACAAGGAGGAGAAAAAGCAGT
CGCTCCTTCCGCTGACGACGCCTCTACTGGCATTACCACTGCCGCTCTTG
CTCTGCCGGAGGGAGGGGCAGCCCCGCTACGCTCCGGACAGAGTATGGTT
ATTCCAGCGCTGCTTTGTCCTCCTCCTCCTCCTCTTCCGCGGCAAGGTGC
GGTACCGCGGTGTCCTGCTGCGAAGGACTGCTGGGGCGAAGCACTTGACG
ACCTCGGTCGCCTCGTCGACGGGCCGTCGCTCTTGGGTTTCCGCGGCGAT
GGACACGACGGCGTCGTCGCAGCGAAGCCGCCTGGCGCAGCAGGATCTCC
GGCCAGGCCTTCTTCTCCGCAACCGCCGCCGGCCGCAGCAGTGGCCGCGA
TGCCGCTCTCTGGCCGTGCCAACGGGGGCGAGAACCCGCTCGCGATTCGT
CGGAGGAGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17904:6..1667-

>mRNA_Ecto-sp13_S_contig17904.5458.1 ID=mRNA_Ecto-sp13_S_contig17904.5458.1|Name=mRNA_Ecto-sp13_S_contig17904.5458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17904:6..1667- (Ectocarpus species13 EcNAP12_S_4_19m)
GACGAAGTGACCATCACCGTATATGCGGGAGGCGGGAGCGGTGGCGGCGG
CGATGACGGCGGTGACGACGAGAGCACTCGCGCTGCCGCCGCCGCCGCTG
CTAACCGAGGCCGTGCCACACCCAGCAGCAGCGAGGGCAACGACGCGGGT
GACGGAGGGAAAGGTGGCGGCAGCGGGCCGGACGACGGCGGAGGCCTGGT
GGAATCGACCCGTGGCTTGGGCGGGGGCGGAGGCAAGGGCGGTGGTTGTC
TCCGACGGGTCGGCGGAGCCGAAACGGGCCTGGCCGGCATCGAGGCGGGC
CTCCGGGCCTTCAGCGAGAGAGTCGGGCGCCTGGAGACCTTCGGCAGGGC
GGGCCCAGAGCAGAGGAGCACGGAAGAGGAGGGGCAGCAGGCAGGGGGTC
GGGCAGGCGAGGACGACGACGAGCCTGAAGACGTTTCGACGGATCTTGCG
GGAGGAGCAGAAGCAGCAGCGACCTCGGGCGAGCGGACGTGCCGGAGCCC
TGGCCGCCGCCACGAGGCCGCCGCCCACGACAACGACCACGTTTCCGCGG
ATACCGGGCTCGACGTGGGCAAGGAACGCGACCCTCTCAGCCATGCAAAT
CCTTGGGAGTACCTCCGCGCGGGGCCTCCCCCCTCCTCATCGTTGCCCTT
CCACAAGCAGGGCGGCAGGCATGGGCTCGATCTGGCAGAACGAATCCATC
TCCTGGAAGCTCAGGTTTTCCCGGCGATTTCGCCTCCTCCACCACCACTC
CCAGTCGTCGCAACCGCGGCCGTGCATACCGGTACAGCATTTTCCGATCC
AACCAAGAAGGCGTTCTCCCACAGCAACGGTGTCAGGAGCGCGGCCGTCG
CCCAGCAGGGAGAAGGCTCGCGGGCGGCGGCGGTGCGGGGGGGGGACGCG
CGGCGAGGAACGGAGCCGTCGGCGAGGGAGGAGCGCATGCGGGCGATTAT
TGGCGGTCTGGCGTCTCTGTCTACCGCCCTCCTGGAGCGCTTGATCACGG
CCGAGGGCCGCCTTCGGAACGCTGCCGCCGCGGGCGGCGGCGGCTTCCAC
GGCAACGACGGCGGGTGTGGCGGCGGTGGCGGCGGCGTCGACGGCACGGA
TGTGTTTTGCCAGAAGGCGCGCCTGATGGTAGCGCAGGCGGAGGCGTTCT
TGGTCCTGGCGAGCACCGGCGACGATGCGGCCACGGCACAACCACCGGCG
CCGCCGCCGACGACGACGACGCAGGATACACAAGGAGGAGAAAAAGCAGT
CGCTCCTTCCGCTGACGACGCCTCTACTGGCATTACCACTGCCGCTCTTG
CTCTGCCGGAGGGAGGGGCAGCCCCGCTACGCTCCGGACAGAGTATGGTT
ATTCCAGCGCTGCTTTGTCCTCCTCCTCCTCCTCTTCCGCGGCAAGCGAA
GCCGCCTGGCGCAGCAGGATCTCCGGCCAGGCCTTCTTCTCCGCAACCGC
CGCCGGCCGCAGCAGTGGCCGCGATGCCGCTCTCTGGCCGTGCCAACGGG
GGCGAGAACCCGCTCGCGATTCGTCGGAGGAGGCGG
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