mRNA_Ecto-sp13_S_contig1788.5443.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1788.5443.1
Unique NamemRNA_Ecto-sp13_S_contig1788.5443.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1788.5443.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.450e-35
Identity = 85/109 (77.98%), Postives = 89/109 (81.65%), Query Frame = -2 
Query:    3 ANGDQPLAGPRRSTTAAEPAGTAALDRQLVGLKVGGGGEQPGWAARAVGTXXXXXXXXXXXVGGFVPRGKTTTATASEGVLNHGPRTPAAPFDSSSSSRPADDASTATA 329
            ANGD+ LAGPRRS+TAAEPAGTAALDRQ   LKVGGGGEQPGWAARA G     XXXXXX VGGFVPR     ATA + VLNHGPRTPAAPFDSSSSSRPADDA+  TA
Sbjct:  843 ANGDEALAGPRRSSTAAEPAGTAALDRQRGDLKVGGGGEQPGWAARAAGASFPGXXXXXXAVGGFVPR-----ATALDSVLNHGPRTPAAPFDSSSSSRPADDATMTTA 946
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BLAST of mRNA_Ecto-sp13_S_contig1788.5443.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.880e-7
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = -2 
Query:  186 NGDQPLAGPRRSTTAAEPAGTAALDRQLVGLKVGGGGEQPGWAARAV 326
            NGD+ LAGPRRS+TAAEPAGTAALDRQ VGLK  G   + G   R +
Sbjct:  826 NGDEALAGPRRSSTAAEPAGTAALDRQRVGLKEAGSRREGGRNGRGL 872
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1788.5443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKE0_9PHAE4.450e-3577.98PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FZH6_ECTSI2.880e-765.96WD repeat domain-containing protein, putative n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1788contigEcto-sp13_S_contig1788:10704..11033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size330
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462925.6486762-CDS-Ecto-sp13_S_contig1788:10703..110331681462925.6486762-CDS-Ecto-sp13_S_contig1788:10703..11033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1788 10704..11033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1788.5443.1prot_Ecto-sp13_S_contig1788.5443.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1788 10704..11033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1788.5443.1

>prot_Ecto-sp13_S_contig1788.5443.1 ID=prot_Ecto-sp13_S_contig1788.5443.1|Name=mRNA_Ecto-sp13_S_contig1788.5443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
CAVAVDASSAGRLLLLLSNGAAGVRGPWLRTPSEAVAVVVLPRGTNPPTA
AALPPPPEDDVPTARAAQPGCSPPPPTFKPTSCRSKAAVPAGSAAVVERL
GPASGWSPLA
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mRNA from alignment at Ecto-sp13_S_contig1788:10704..11033+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1788.5443.1 ID=mRNA_Ecto-sp13_S_contig1788.5443.1|Name=mRNA_Ecto-sp13_S_contig1788.5443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:10704..11033+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCCGTGGCCGTCGACGCGTCATCAGCGGGGCGACTGCTGCTGCTACT
GTCAAACGGCGCCGCTGGGGTGCGCGGACCGTGGTTGAGAACGCCCTCCG
AAGCCGTCGCCGTCGTCGTCTTGCCCCGTGGGACAAACCCGCCTACGGCT
GCCGCGCTGCCGCCACCGCCGGAAGACGACGTGCCGACAGCACGCGCTGC
CCAACCTGGCTGCTCCCCACCGCCGCCCACCTTCAAGCCGACTAGTTGCC
GATCCAAAGCAGCCGTACCAGCAGGTTCCGCCGCTGTAGTTGAGCGCCTC
GGGCCGGCGAGCGGCTGGTCTCCGTTGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1788:10704..11033+

>mRNA_Ecto-sp13_S_contig1788.5443.1 ID=mRNA_Ecto-sp13_S_contig1788.5443.1|Name=mRNA_Ecto-sp13_S_contig1788.5443.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1788:10704..11033+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGCCGTGGCCGTCGACGCGTCATCAGCGGGGCGACTGCTGCTGCTACT
GTCAAACGGCGCCGCTGGGGTGCGCGGACCGTGGTTGAGAACGCCCTCCG
AAGCCGTCGCCGTCGTCGTCTTGCCCCGTGGGACAAACCCGCCTACGGCT
GCCGCGCTGCCGCCACCGCCGGAAGACGACGTGCCGACAGCACGCGCTGC
CCAACCTGGCTGCTCCCCACCGCCGCCCACCTTCAAGCCGACTAGTTGCC
GATCCAAAGCAGCCGTACCAGCAGGTTCCGCCGCTGTAGTTGAGCGCCTC
GGGCCGGCGAGCGGCTGGTCTCCGTTGGCC
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