mRNA_Ecto-sp13_S_contig17855.5430.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17855.5430.1
Unique NamemRNA_Ecto-sp13_S_contig17855.5430.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A6H5KEK1_9PHAE (Tudor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK1_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.780e-33
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII
Sbjct:  139 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 193
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A7S2UU23_9STRA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU23_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.060e-21
Identity = 39/56 (69.64%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGS-MTMGKWVRKII 165
            DSP+IRAIGFLYLRYT PPK LW W+EP++DDEEE  PSP   S MTMG++V+KI+
Sbjct:   43 DSPYIRAIGFLYLRYTHPPKLLWDWIEPFLDDEEEITPSPDPSSKMTMGQYVQKIV 98
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A061RVA8_9CHLO (Pre-mRNA-splicing factor 38 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RVA8_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.190e-19
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSP+IRA+GFL LRY C PKE+W W+  Y+DD EEFKPSP   S+TMG ++R ++
Sbjct:   88 DSPYIRAVGFLLLRYICNPKEIWSWVSSYVDDPEEFKPSPYGASITMGAFLRDLL 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1V9Z9B0_9STRA (Pre-mRNA-splicing factor 38 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z9B0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.130e-18
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMT-MGKWVRKII 165
            DSP+IR IGFLYLRY C P+ELW W EPY+DDEEEF  S  +  +T MG WVR ++
Sbjct:  129 DSPYIRCIGFLYLRYVCDPEELWSWYEPYLDDEEEFNASANDKILTTMGAWVRSLL 184
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1U8Q576_NELNU (Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8Q576_NELNU)

HSP 1 Score: 82.8 bits (203), Expect = 2.800e-18
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSP+IRAIGFLYLRY   PK LWGW EPY+ DEEEF P       TMG +VR ++
Sbjct:   90 DSPYIRAIGFLYLRYAADPKTLWGWFEPYVKDEEEFSPGSNGRVTTMGAYVRDLL 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: UPI001CB94151 (pre-mRNA splicing factor SR-like 1 isoform X4 n=4 Tax=Asteraceae TaxID=4210 RepID=UPI001CB94151)

HSP 1 Score: 81.6 bits (200), Expect = 3.280e-18
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSP+IRA+GFLYLRY   PK LWGW EPY+ D+EEF P       TMG +VR ++
Sbjct:   88 DSPYIRAVGFLYLRYAADPKSLWGWFEPYIKDDEEFSPGSNGRMTTMGVYVRDLL 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1U8QCF3_NELNU (Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QCF3_NELNU)

HSP 1 Score: 82.4 bits (202), Expect = 3.340e-18
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSP+IRAIGFLYLRY   PK LWGW EPY+ DEEEF P       TMG ++R ++
Sbjct:   90 DSPYIRAIGFLYLRYAADPKTLWGWFEPYLKDEEEFSPGSNGRVTTMGVYIRDLL 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A1U8QAW9_NELNU (Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8QAW9_NELNU)

HSP 1 Score: 82.4 bits (202), Expect = 3.560e-18
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSP+IRAIGFLYLRY   PK LWGW EPY+ DEEEF P       TMG ++R ++
Sbjct:   90 DSPYIRAIGFLYLRYAADPKTLWGWFEPYLKDEEEFSPGSNGRVTTMGVYIRDLL 144
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A2P6UZR9_9CHLO (Pre-mRNA-splicing factor 38 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZR9_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.020e-18
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTE--GSMTMGKWVRKII 165
            DSP+IRA+GFLYLRY C P++LW W +PYM DEEEF+PSP+    ++TMG++ R I+
Sbjct:   89 DSPYIRAVGFLYLRYVCDPRKLWNWFKPYMRDEEEFEPSPSGLGTTVTMGEYARDIL 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Match: A0A061RJ78_9CHLO (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RJ78_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.140e-18
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKWVRKII 165
            DSP+IRA+GFL LRY C PKE+W W+  Y+DD EEFKPSP   S+TMG ++R ++
Sbjct:   88 DSPYIRAVGFLLLRYICNPKEIWSWVSSYVDDPEEFKPSPYGASITMGAFLRDLL 142
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17855.5430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEK1_9PHAE1.780e-33100.00Tudor domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S2UU23_9STRA1.060e-2169.64Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Fib... [more]
A0A061RVA8_9CHLO4.190e-1960.00Pre-mRNA-splicing factor 38 n=1 Tax=Tetraselmis sp... [more]
A0A1V9Z9B0_9STRA2.130e-1862.50Pre-mRNA-splicing factor 38 n=1 Tax=Thraustotheca ... [more]
A0A1U8Q576_NELNU2.800e-1861.82Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucife... [more]
UPI001CB941513.280e-1858.18pre-mRNA splicing factor SR-like 1 isoform X4 n=4 ... [more]
A0A1U8QCF3_NELNU3.340e-1860.00Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucife... [more]
A0A1U8QAW9_NELNU3.560e-1860.00Pre-mRNA-splicing factor 38 n=1 Tax=Nelumbo nucife... [more]
A0A2P6UZR9_9CHLO4.020e-1859.65Pre-mRNA-splicing factor 38 n=1 Tax=Micractinium c... [more]
A0A061RJ78_9CHLO4.140e-1860.00Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Tet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17855contigEcto-sp13_S_contig17855:11..757 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score83.6
Seed ortholog evalue3.3e-14
Seed eggNOG ortholog13333.ERM97019
Model size171
KEGG koko:K12850
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0010035,GO:0010038,GO:0010226,GO:0032991,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0050896,GO:0071011,GO:1990904
Exons2
EggNOG free text desc.pre-mRNA-splicing factor
EggNOG OGs37KBI@33090,3GE8E@35493,KOG2888@1,KOG2888@2759
Cds size171
COG Functional cat.V
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.8134823-CDS-Ecto-sp13_S_contig17855:10..1211681462924.8134823-CDS-Ecto-sp13_S_contig17855:10..121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17855 11..121 -
1681462924.8255346-CDS-Ecto-sp13_S_contig17855:697..7571681462924.8255346-CDS-Ecto-sp13_S_contig17855:697..757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17855 698..757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17855.5430.1prot_Ecto-sp13_S_contig17855.5430.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17855 11..757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17855.5430.1

>prot_Ecto-sp13_S_contig17855.5430.1 ID=prot_Ecto-sp13_S_contig17855.5430.1|Name=mRNA_Ecto-sp13_S_contig17855.5430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
DSPFIRAIGFLYLRYTCPPKELWGWLEPYMDDEEEFKPSPTEGSMTMGKW
VRKIIR*
back to top

mRNA from alignment at Ecto-sp13_S_contig17855:11..757-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17855.5430.1 ID=mRNA_Ecto-sp13_S_contig17855.5430.1|Name=mRNA_Ecto-sp13_S_contig17855.5430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17855:11..757- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGCCCTTTATCCGAGCAATCGGGTTTCTGTACCTCCGCTACACCTG
CCCCCCCAAGGTGCGCGAGCGTTTGAATTTGGGATCACCCTGCCAACTGC
TGTCGGCGAGTGGTCAGTCCCGGCGAGGGTTCCCCTGTTGTGTCGTAGGC
TCTGCTATCCTTTTCCCTTCCCGAAGGATGTTGTTGGCTGGTGTAGAGTT
CCCGGACTAGGGGCGTCGCCGGGAGCGCATGAACGGCAGTGTGTCTCTCC
TCTGCTTGTTTATATTCTCGAATATATAAGGGTCGTTGGTTGTTGGGTTC
ATCGCAGGAACGGTGGGCCGCGGCTTCGTCGGTCTCTTATCGTCGTTGGT
CTCTTTTGTCGTTGTTCTTGTTGTGCCGCTCTTTTTTGGTCGCTGCACTC
GCCGTAGTGGGCCGAGCGGGAGTGTTGCTGATGTTTTGTTGTCGTCCACT
TCCTCGTTCCTGTCATTATCTTTTGCTCCGTGTCATGTGTGGGAGATCGT
TACCCCTCCTCCCCACTACCACCAAGTTCTGCTGTTGCTGATTACGGCAC
TTGTAGGCGTGACGATGGGGGGCAAGTTGTTAGTTGACGTGGGTGCGCTT
TTTCCCTGCCTCGCCGACGCGCTTGGTTCATCGCAGGAGCTTTGGGGGTG
GCTGGAGCCGTACATGGATGACGAAGAAGAGTTCAAGCCGTCCCCCACGG
AAGGGAGTATGACCATGGGCAAGTGGGTCCGCAAGATTATCAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17855:11..757-

>mRNA_Ecto-sp13_S_contig17855.5430.1 ID=mRNA_Ecto-sp13_S_contig17855.5430.1|Name=mRNA_Ecto-sp13_S_contig17855.5430.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17855:11..757- (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGCCCTTTATCCGAGCAATCGGGTTTCTGTACCTCCGCTACACCTG
CCCCCCCAAGGAGCTTTGGGGGTGGCTGGAGCCGTACATGGATGACGAAG
AAGAGTTCAAGCCGTCCCCCACGGAAGGGAGTATGACCATGGGCAAGTGG
GTCCGCAAGATTATCAGGTGA
back to top