mRNA_Ecto-sp13_S_contig1784.5424.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1784.5424.1
Unique NamemRNA_Ecto-sp13_S_contig1784.5424.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1784.5424.1 vs. uniprot
Match: D8LN72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN72_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.540e-31
Identity = 160/203 (78.82%), Postives = 161/203 (79.31%), Query Frame = 3 
Query:  186 GFKLTASCKTTTYDLNPYSTGSASSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGGEXXXXXXXXXXXXXSWSNSNSPRYYSSSSSYNSRPARAGGDDGAPSSGSGTGGHISEVSEXXXXXXXXXXXXXXXXXXXXXXXXSAAPTAGPVEFLSRWTSESETDMNDWSSYRYRNGDDMD 794
            GFKLTASCKTTTYDLNPYSTGS SSF   XXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXXXXXXXXXXXSRGGEXXXXXXXXXXXX SWS+SNS RYYSSSS YNSRPARAGGDDGAPS GSGTGGH SEV E        XXXXXXXXXXXXXXXX                SESE DMNDWSS RY NGDDMD
Sbjct:   64 GFKLTASCKTTTYDLNPYSTGSTSSF-FSXXXXXXXXXXXXXXXXXXXXGGRNEXXXXXXXXXXXXXXXXXXXXXXXSRGGEXXXXXXXXXXXXGSWSSSNSARYYSSSSPYNSRPARAGGDDGAPSGGSGTGGHFSEVPEDGSFGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASESEADMNDWSSDRYSNGDDMD 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1784.5424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN72_ECTSI1.540e-3178.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1784contigEcto-sp13_S_contig1784:6309..9212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1187
Hectar predicted targeting categoryother localisation
Exons5
Cds size441
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1784.5424.1prot_Ecto-sp13_S_contig1784.5424.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1784 6309..7755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.1727464-CDS-Ecto-sp13_S_contig1784:6308..64681681462924.1727464-CDS-Ecto-sp13_S_contig1784:6308..6468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 6309..6468 -
1681462924.1838098-CDS-Ecto-sp13_S_contig1784:6606..67331681462924.1838098-CDS-Ecto-sp13_S_contig1784:6606..6733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 6607..6733 -
1681462924.1929834-CDS-Ecto-sp13_S_contig1784:7146..72071681462924.1929834-CDS-Ecto-sp13_S_contig1784:7146..7207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 7147..7207 -
1681462924.2015553-CDS-Ecto-sp13_S_contig1784:7662..77551681462924.2015553-CDS-Ecto-sp13_S_contig1784:7662..7755Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 7663..7755 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.2169693-UTR-Ecto-sp13_S_contig1784:7755..83751681462924.2169693-UTR-Ecto-sp13_S_contig1784:7755..8375Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1784 7756..8375 -
1681462924.2343583-UTR-Ecto-sp13_S_contig1784:9086..92121681462924.2343583-UTR-Ecto-sp13_S_contig1784:9086..9212Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1784 9087..9212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1784.5424.1

>prot_Ecto-sp13_S_contig1784.5424.1 ID=prot_Ecto-sp13_S_contig1784.5424.1|Name=mRNA_Ecto-sp13_S_contig1784.5424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MNDWSSYRYRNGDDMDNSYHYSYELSQSESVAALELTYTASDEDYLYGTP
AHSYYDDEDLVVGRYTSGESRAQTVFAGRDGSWGDTCTMQAISGQYLSID
GDSTIGIHRSWMETGDATGGVYGMQGNRTFPDGIECMIAGVVTYME*
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mRNA from alignment at Ecto-sp13_S_contig1784:6309..9212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1784.5424.1 ID=mRNA_Ecto-sp13_S_contig1784.5424.1|Name=mRNA_Ecto-sp13_S_contig1784.5424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2904bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1784:6309..9212- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGACCTGTGTTTCGTAGTCGCGGCTGTGGCCGGGATCTTGAACAC
ATCGGCGAACGCTGGTGGCATTCGCCACAAGCGTTCTGCCATCATTTCAA
GGAGGGAAGATGCAACCGACTTGCAGGTTAGTAACGCCCGGCAGGAATGC
GCTACAGCAGTAGACAGGAATGATGATAATGTAGGCAAATTTGGCGCGTT
GTACATTAGACTACTACATGATGTAATCGGTTGCCGTATATTCCTCCGTT
CCTCCGTATTCGGTGATTGCTGAAAAATATGAACGTGTATGCCACTGTTG
TTCTTGTTGCTGTTGTTGTGTTTGTTGTTGTTGTTAATATTCACATTAAA
AACTGCTCCAATCTCTCTATCCGTATCTTCATCTGTCCGTACTATTTATT
TACATTAGACAGCGTTAACACTCGCGGTCGATTCCCGTGGTCACAGGCTA
ACTTACTCAGGAAAAGATACTACAACAAAAGGGCCGAAGGGTACCGACTG
TAGTAGGGTGTGTTTATTTCCACATCCGTCCGTAAGAGGATAGCCGGCTT
TGTTTACCCTATTTAGCAAGGTACCCGCTCGCACCGGGGCTGGTTTACCC
AGACGTGCATGCTTCTACGAGGAGATCGAGACATTATATACGTACTTGTG
GTCGACGTTCAATCTGATCACAACAACCGTTGTTATGAGGTGGATACTAA
GGGGATTGAGTCCCGGATTACTGTTTCTGATCAAACATTGATTGTAGTTC
ATCAAGAGGTCTGCGGAGGTGCTGATCACGCAACCACCCGTTCTGCAATC
AATCGTGTGGCAATCAACACCACCCGATCCCAATCAGGAGCTCTACTTCT
CCGAAACACTCTCGGGGAACCATACCGTAACTATCCTTGAGACCGGGGGT
TCAAGCTGACGGCCTCCTGCAAGACTACCACCTATGACTTAAACCCGTAC
AGCACCGGATCAGCATCGTCCTTCTCCTCCTCGTCATCGCCATCTTCCTA
CTACAGCAGCCACACGGAGACCTCCTTCTTCTATGGCTCACACGGGGGAG
GGGACGAAGAAGAAGAGGGCGCGTCCCACCACCACCGACAACCCCCCAAG
CACTCAGGCGGCAAAGGTGGTGGTGGTAGCCGTGGTGGTGAAGGCGGTAG
TGGTCGAGGTCATGGTCGTAGTGGCGATGGCAGCTGGAGCAACAGCAACT
CGCCTCGTTACTATTCCTCTTCTTCGTCGTATAACTCTAGACCGGCTCGT
GCTGGCGGTGATGACGGTGCACCCTCTAGCGGCTCCGGAACTGGCGGCCA
TATCTCTGAAGTTTCAGAGGACGGCTCCTTTAGAGATGGTTCTGGACACG
GCGGTCGAATTGGGGCCACCACAAGATCGACGTCCCTATCGTCGGCTGCT
CCTACCGCCGGACCTGTTGAGTTCCTGAGCCGATGGACAAGCGAAAGCGA
GACCGACATGAACGACTGGTCATCTTACCGCTACAGAAACGGTGACGACA
TGGACAACAGCTACCACTACAGCTACGAGCTCAGCCAAAGCGAGAGCGTT
GTGAGTTGGTGATCAATCTCGGGAATGCTTTTCAGCGTGTATTGGATAAG
ACGCTGACGATGTGTTCGAGCTCATAATCGAAGTACAGCACGCGCGAAGC
AACACCGACGAGATTGATTGATGTCCTACCGGTCGAAACAAGAGATCGGT
TGGTTTCCTCTACGACTTACAGACTTGAGTGTTTTCACACTCTCGACCGT
TGTCCCGTGCCTGTTTTCGGTCCTGGGTGAGACCGAATGCGCTCAGGCAG
ACTATGCTTGGGTGGGCTTCACAACCTCACTCAATGTTCATTGGGGGTGT
TGTCGTCGACCTGGTTCGCTCGAATCTCTGCACTTTGTCTACGGCCGGTG
AACTCACCAGCAAATCTTGTTGCAGTGTTACCTGCGAGAACCGGGCCTTG
ATGGCATCCTTCTGGCGCCGTGTGTGTGTTGTGCGTTTTTTTCCCGATAT
CGCAGGCGGCATTAGAGCTGACCTACACAGCCTCTGACGAGGACTATCTG
TACGGAACTCCTGCTCGTGAGTACAATACATACTGCCGGTCTTTGCTAAT
GTGAACACGAGGATCGCAGCAAGGGCACGAATAATGATAAGATTCGCCGC
CATTTCAATGACGATTTCCCCCACGTACATACGCGGAGGTTGTTGGCGTG
TGTGGGCGTTGTTGCGGTGTGGTTGCACCTCCGGCATTTATCTGCAGGGG
AATAATGTAGAGATGGGGAGGGCGCCGTTTGAAAACGGCGCCAACAGCAG
TACCGGAGATCATTGGCGTACAGTGTGGGCGGGTATTTGTCAAGCCGATT
CACCCGCCCGCCTGATAGCGGGTAACGACGCGGACACCCACCTCGCTCGT
CCACTCTCCTTCCGCCATCCAACCCCCTGTTTATCCTTCATGCCCGTGCC
TTTCTTGGCGGCCGGTACACACACCCTAGACTCCTACTACGACGACGAAG
ACCTGGTCGTCGGGAGATACACGTCTGGGGAGAGCCGCGCGCAGACTGTC
TTCGCCGGGAGGGATGGCTCCTGGGGGGACACGTGCACGATGCAAGCCAT
ATCAGGGTGAGAGCCGACAGACGACACCGACAGACTACGCACGTCCGTCC
ATGATGTTACCAATCTCCTGACACACACCCCTGGCCATCCTTCTCAACCG
ACCATCGGTTTCCTTTCCCTTCACTCCACCGATTGATGTTACAGGCAGTA
TTTGAGCATTGACGGGGATAGCACGATCGGCATCCACCGTTCGTGGATGG
AGACGGGGGATGCAACGGGCGGTGTGTACGGGATGCAGGGCAACCGCACC
TTCCCCGATGGAATCGAGTGTATGATCGCTGGTGTGGTCACGTACATGGA
ATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1784:6309..9212-

>mRNA_Ecto-sp13_S_contig1784.5424.1 ID=mRNA_Ecto-sp13_S_contig1784.5424.1|Name=mRNA_Ecto-sp13_S_contig1784.5424.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1784:6309..9212- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGACTGGTCATCTTACCGCTACAGAAACGGTGACGACATGGACAA
CAGCTACCACTACAGCTACGAGCTCAGCCAAAGCGAGAGCGTTGCGGCAT
TAGAGCTGACCTACACAGCCTCTGACGAGGACTATCTGTACGGAACTCCT
GCTCACTCCTACTACGACGACGAAGACCTGGTCGTCGGGAGATACACGTC
TGGGGAGAGCCGCGCGCAGACTGTCTTCGCCGGGAGGGATGGCTCCTGGG
GGGACACGTGCACGATGCAAGCCATATCAGGGCAGTATTTGAGCATTGAC
GGGGATAGCACGATCGGCATCCACCGTTCGTGGATGGAGACGGGGGATGC
AACGGGCGGTGTGTACGGGATGCAGGGCAACCGCACCTTCCCCGATGGAA
TCGAGTGTATGATCGCTGGTGTGGTCACGTACATGGAATAA
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