mRNA_Ecto-sp13_S_contig1784.5423.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1784.5423.1
Unique NamemRNA_Ecto-sp13_S_contig1784.5423.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A6H5KEQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEQ7_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 9.730e-54
Identity = 99/106 (93.40%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:  286 VGADTSSAPGDGIAASPGGVTGGRFELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH 603
            VGAD SSAPGDGI    GGV GG FELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH
Sbjct: 1152 VGADASSAPGDGIV---GGVPGGWFELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH 1254
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: D8LN71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN71_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 1.870e-49
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:  331 SPGGVTGGRFELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH 603
            SPG V GGRFELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH
Sbjct:  891 SPGRVPGGRFELGEDEVAAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH 981
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A7S3XSA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSA8_HETAK)

HSP 1 Score: 94.4 bits (233), Expect = 5.590e-21
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:  409 DFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTRH 603
            DF+R + + L LRCVNADPNYGSMWFHCR +PSDTA+S+L  +K +MA EL NLQ VY+ A+ R+
Sbjct:   21 DFMRVDTKQLELRCVNADPNYGSMWFHCRQKPSDTARSVLWRAKSLMAVELHNLQHVYIKALARY 85
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A7S2BQC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BQC0_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 6.710e-12
Identity = 37/73 (50.68%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  382 AAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTR 600
            AAA  LS  D L A +  L LRC NADPNYG +WF CR  PS++++ +L  +KV MA EL  L  +YL A+ R
Sbjct:    2 AAATPLSV-DALTASLPALELRCTNADPNYGVVWFQCRGHPSESSRRVLRRAKVAMAHELQALGPIYLQALCR 73
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A2R5GDZ7_9STRA (Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDZ7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.970e-11
Identity = 29/62 (46.77%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  409 DFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAV 594
            + +  +   + LRCVNADPNYG++WFHC+  P DTA+ +L  +K +M EELT  + VY  A+
Sbjct: 1275 NMMACDTSDIELRCVNADPNYGALWFHCKRGPFDTARQVLRTAKSLMIEELTKFRAVYREAI 1336
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A7S0PWJ1_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PWJ1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.480e-9
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:  436 LVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTR 600
            L LRC NADPNYG +WFHCR  P+DTA+++L  +KV    EL     +Y+ A+ R
Sbjct: 1279 LELRCANADPNYGFLWFHCRESPTDTARAVLTRAKVKFRSELGKHALIYIAAIIR 1333
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A7R9Z4Y7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4Y7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.880e-9
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:  436 LVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTR 600
            L LRC NADPNYG +WFHC+  PSDTA+ ++   K M+A ++     +Y+ A  R
Sbjct:   89 LELRCSNADPNYGKLWFHCKALPSDTARHVIRRGKSMIAHDIAATAYLYVAACVR 143
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: UPI001D04534D (uncharacterized protein n=1 Tax=Naegleria lovaniensis TaxID=51637 RepID=UPI001D04534D)

HSP 1 Score: 65.5 bits (158), Expect = 6.140e-9
Identity = 28/71 (39.44%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:  382 AAAGRLSPGDFLRAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAV 594
            +AA  +S  +  + ++E L   CVNADPNYG +WFHC+  P D+ + +L  +K M+  EL   +++Y HA+
Sbjct:  912 SAAAPISTINETQEQIENL---CVNADPNYGPLWFHCKSHPLDSTRQVLRKAKEMLMSELAQQKEIYQHAI 979
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A6A5BN57_NAEFO (Uncharacterized protein n=1 Tax=Naegleria fowleri TaxID=5763 RepID=A0A6A5BN57_NAEFO)

HSP 1 Score: 65.1 bits (157), Expect = 8.350e-9
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:  448 CVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAV-TRH 603
            CVNADPNYG +WFHC+  P D+ + +L  +K M+  EL   ++ Y HA+ TRH
Sbjct:  957 CVNADPNYGPLWFHCKSHPLDSTRQVLRRAKEMLMSELAQQKETYQHAIMTRH 1009
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BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Match: A0A6S8EA78_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8EA78_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 8.380e-9
Identity = 26/58 (44.83%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:  418 RAEVEGLVLRCVNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHA 591
            + +   L  RCVNADPNYG++WFHC+  P DTA+ +L  +K ++  EL   ++VY  A
Sbjct:  932 KIDTRALEQRCVNADPNYGALWFHCKRGPFDTARQVLRTAKKLLIAELLKFRNVYKRA 989
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1784.5423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEQ7_9PHAE9.730e-5493.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN71_ECTSI1.870e-4997.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3XSA8_HETAK5.590e-2163.08Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2BQC0_9STRA6.710e-1250.68Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A2R5GDZ7_9STRA1.970e-1146.77Pre-mRNA-splicing factor CLF1 n=1 Tax=Hondaea ferm... [more]
A0A7S0PWJ1_9STRA3.480e-950.91Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A7R9Z4Y7_9STRA5.880e-947.27Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
UPI001D04534D6.140e-939.44uncharacterized protein n=1 Tax=Naegleria lovanien... [more]
A0A6A5BN57_NAEFO8.350e-949.06Uncharacterized protein n=1 Tax=Naegleria fowleri ... [more]
A0A6S8EA78_9STRA8.380e-944.83Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1784contigEcto-sp13_S_contig1784:748..1805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score181.8
Seed ortholog evalue3.2e-43
Seed eggNOG ortholog2880.D8LN71
Model size606
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28JG8@1,2QRVD@2759
Cds size603
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462924.077771-CDS-Ecto-sp13_S_contig1784:747..12651681462924.077771-CDS-Ecto-sp13_S_contig1784:747..1265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 748..1265 +
1681462924.0899005-CDS-Ecto-sp13_S_contig1784:1718..18031681462924.0899005-CDS-Ecto-sp13_S_contig1784:1718..1803Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1784 1719..1803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1784.5423.1prot_Ecto-sp13_S_contig1784.5423.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1784 748..1803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1784.5423.1

>prot_Ecto-sp13_S_contig1784.5423.1 ID=prot_Ecto-sp13_S_contig1784.5423.1|Name=mRNA_Ecto-sp13_S_contig1784.5423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
GVGGWSGACSAASAVPAGSSSSSNSSGGGSSGKSTQGGDVRGSVDDDDDD
DDAPAASPPCTNPSSSTASTASTATPLSSSITTTLTAAKTATTASVGADT
SSAPGDGIAASPGGVTGGRFELGEDEVAAAGRLSPGDFLRAEVEGLVLRC
VNADPNYGSMWFHCRHRPSDTAKSILMMSKVMMAEELTNLQDVYLHAVTR
H
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mRNA from alignment at Ecto-sp13_S_contig1784:748..1805+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1784.5423.1 ID=mRNA_Ecto-sp13_S_contig1784.5423.1|Name=mRNA_Ecto-sp13_S_contig1784.5423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1784:748..1805+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTTGGCGGCTGGTCTGGCGCGTGTTCCGCTGCATCAGCGGTGCCGGC
AGGCAGCAGCAGCAGCAGCAACAGCAGCGGCGGCGGTAGCAGCGGCAAGA
GTACCCAGGGGGGCGACGTGAGGGGATCAGTAGACGACGACGACGACGAC
GACGACGCGCCAGCCGCCTCTCCTCCTTGCACCAATCCTTCCTCTTCGAC
GGCTTCCACAGCCTCGACAGCAACACCGTTATCGTCGTCGATCACGACAA
CGCTAACAGCAGCCAAGACCGCGACGACGGCATCGGTCGGCGCCGACACC
TCATCCGCCCCCGGGGATGGAATCGCAGCGTCCCCTGGTGGGGTAACCGG
CGGTCGGTTCGAGCTCGGGGAGGACGAGGTGGCCGCGGCGGGGCGGCTGT
CACCGGGGGACTTCTTGAGAGCGGAGGTGGAGGGGCTGGTGCTGAGGTGT
GTCAACGCGGACCCGAACTACGGGTCCATGTGGTTTCACTGCCGACATCG
ACCTTCCGACACTGCAAAGTGAGTTGCCTACTGAGCCGCAAGGCAAGGGA
TGGGGGAGGGGGGCAAGTTTGTGGCACTTGTTATTCATTGCTGCTGTTGC
GTCTACTGATGTTGTTGCTGTGGTTGTAACGAATTATTTGATCGCTGCCG
CTGCTGCTGCTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGTCCTTAGGTTTTGCTGCTG
TGCGGCTCTTTGCTTTTGGGTTGTTTGCCCCTTGTTGAGGGAAGTGTGTT
AAAACCCCTTGTCTTTCGTCCAAAGGCACCTGCTCTCTTGGTGCCAGGTT
TGACCCGCAAGACAAACATCCAGACCACAAACGCGCCCCACAGCATGCAC
CCGTAGAGCATTTCCTGAATCGATTCCGTTTTCGCTCTCCGCCTCCGCTT
CTCCTCCTCTTTTTTGGGTAGGTCCATACTGATGATGTCCAAGGTGATGA
TGGCCGAGGAGCTCACCAACCTCCAGGACGTCTACCTCCACGCGGTCACG
CGGCACGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1784:748..1805+

>mRNA_Ecto-sp13_S_contig1784.5423.1 ID=mRNA_Ecto-sp13_S_contig1784.5423.1|Name=mRNA_Ecto-sp13_S_contig1784.5423.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1784:748..1805+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTTGGCGGCTGGTCTGGCGCGTGTTCCGCTGCATCAGCGGTGCCGGC
AGGCAGCAGCAGCAGCAGCAACAGCAGCGGCGGCGGTAGCAGCGGCAAGA
GTACCCAGGGGGGCGACGTGAGGGGATCAGTAGACGACGACGACGACGAC
GACGACGCGCCAGCCGCCTCTCCTCCTTGCACCAATCCTTCCTCTTCGAC
GGCTTCCACAGCCTCGACAGCAACACCGTTATCGTCGTCGATCACGACAA
CGCTAACAGCAGCCAAGACCGCGACGACGGCATCGGTCGGCGCCGACACC
TCATCCGCCCCCGGGGATGGAATCGCAGCGTCCCCTGGTGGGGTAACCGG
CGGTCGGTTCGAGCTCGGGGAGGACGAGGTGGCCGCGGCGGGGCGGCTGT
CACCGGGGGACTTCTTGAGAGCGGAGGTGGAGGGGCTGGTGCTGAGGTGT
GTCAACGCGGACCCGAACTACGGGTCCATGTGGTTTCACTGCCGACATCG
ACCTTCCGACACTGCAAAGTCCATACTGATGATGTCCAAGGTGATGATGG
CCGAGGAGCTCACCAACCTCCAGGACGTCTACCTCCACGCGGTCACGCGG
CAC
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