mRNA_Ecto-sp13_S_contig1782.5412.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1782.5412.1
Unique NamemRNA_Ecto-sp13_S_contig1782.5412.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 2.720e-49
Identity = 78/89 (87.64%), Postives = 80/89 (89.89%), Query Frame = 1 
Query:    1 SLSAFSACPR--LSSQGHTRRSALLPPPAALHLLTMGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            SLS F   P   LSSQGHTR SALLPPP ALHLLTMGSKALVNSHPK+FGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRV+ATEIGFTK
Sbjct:    8 SLSTFQRAPSASLSSQGHTRCSALLPPPVALHLLTMGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTK 96
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.860e-23
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG+KAL NSHPK +GKGG  CRVC+NQHG+I+KYG+ MCRQCFR +A +IGF K
Sbjct:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHK 54
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: UPI00189EBBD0 (40S ribosomal protein S29 n=1 Tax=Choloepus didactylus TaxID=27675 RepID=UPI00189EBBD0)

HSP 1 Score: 91.3 bits (225), Expect = 1.720e-22
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:   64 LLPPPAALHLLTMGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            +LP  ++LH   MG + L  SHP+ FG+G R CRVCSN+HGLIRKYGL MCRQCFR +A +IGF K
Sbjct:    4 ILPSFSSLHPWKMGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIK 69
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: Q209Q3_9CHLO (Ribosomal protein S29 subunit n=1 Tax=Chlamydomonas sp. ICE-L TaxID=309537 RepID=Q209Q3_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 3.340e-22
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG   + NSHPKN+G+G RHCRVCSN HGLIRKYGL +CRQCFR  A +IGF K
Sbjct:    1 MGHDTVWNSHPKNYGQGSRHCRVCSNVHGLIRKYGLNICRQCFREKAADIGFIK 54
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: G7YKF2_CLOSI (40S ribosomal protein S29 n=3 Tax=Digenea TaxID=6179 RepID=G7YKF2_CLOSI)

HSP 1 Score: 89.4 bits (220), Expect = 6.730e-22
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG   + +SHPK++G+G RHCRVCSN+HGLIRKYGL MCRQCFR++A  IGF K
Sbjct:    1 MGHANIWHSHPKDYGQGSRHCRVCSNRHGLIRKYGLNMCRQCFRMYANVIGFRK 54
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: A0A6J1U725_9SAUR (40S ribosomal protein S29 n=3 Tax=Euteleostomi TaxID=117571 RepID=A0A6J1U725_9SAUR)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-21
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG + L  SHP+ FG+G R CRVCSN+HGLIRKYGL MCRQCFR +A +IGFTK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFTK 54
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: A0A183ANC3_9TREM (40S ribosomal protein S29 n=1 Tax=Echinostoma caproni TaxID=27848 RepID=A0A183ANC3_9TREM)

HSP 1 Score: 88.2 bits (217), Expect = 1.930e-21
Identity = 36/54 (66.67%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG  ++ +SHPKN+G+G R CRVC+N+HGLIRKYGL MCRQCFR++A+ IGF K
Sbjct:    1 MGHASIYHSHPKNYGQGSRCCRVCANKHGLIRKYGLNMCRQCFRMYASVIGFRK 54
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: UPI00090E0E50 (Uncharacterized protein n=1 Tax=Xenopus laevis TaxID=8355 RepID=UPI00090E0E50)

HSP 1 Score: 88.6 bits (218), Expect = 2.350e-21
Identity = 38/54 (70.37%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG + L  SHP+ FG+G R CRVCSN+HGLIRKYGL MCRQCFR +A +IGFTK
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFTK 54
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: A0A368SFU2_SETIT (Uncharacterized protein n=1 Tax=Setaria italica TaxID=4555 RepID=A0A368SFU2_SETIT)

HSP 1 Score: 89.4 bits (220), Expect = 2.440e-21
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   43 GHTRRSALLPPPAALHLLTMGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            G T R  LLP  AA     MG   + NSHPKN+G G R CRVC+N HGLIRKYGL  CRQCFR +A +IGF K
Sbjct:   32 GFTGRDFLLP--AAAAAAAMGHSNVWNSHPKNYGPGSRVCRVCANPHGLIRKYGLMCCRQCFRSNAKDIGFIK 102
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BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Match: A0A7J7QR56_9CHLO (40S ribosomal protein S29 (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR56_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 2.610e-21
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:  100 MGSKALVNSHPKNFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK 261
            MG +A+ NSHPK++GKGGR CRVCSNQ G+IRKY L +CRQCFR +A +IGF K
Sbjct:    1 MGHEAVWNSHPKDYGKGGRKCRVCSNQGGIIRKYNLNICRQCFREYANDIGFIK 54
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1782.5412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJK2_ECTSI2.720e-4987.64Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A835YKD0_9STRA2.860e-2370.37Putative 40S ribosomal protein RPS29 n=1 Tax=Tribo... [more]
UPI00189EBBD01.720e-2262.1240S ribosomal protein S29 n=1 Tax=Choloepus didact... [more]
Q209Q3_9CHLO3.340e-2270.37Ribosomal protein S29 subunit n=1 Tax=Chlamydomona... [more]
G7YKF2_CLOSI6.730e-2268.5240S ribosomal protein S29 n=3 Tax=Digenea TaxID=61... [more]
A0A6J1U725_9SAUR1.360e-2170.3740S ribosomal protein S29 n=3 Tax=Euteleostomi Tax... [more]
A0A183ANC3_9TREM1.930e-2166.6740S ribosomal protein S29 n=1 Tax=Echinostoma capr... [more]
UPI00090E0E502.350e-2170.37Uncharacterized protein n=1 Tax=Xenopus laevis Tax... [more]
A0A368SFU2_SETIT2.440e-2160.27Uncharacterized protein n=1 Tax=Setaria italica Ta... [more]
A0A7J7QR56_9CHLO2.610e-2168.5240S ribosomal protein S29 (Fragment) n=1 Tax=Scene... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1782contigEcto-sp13_S_contig1782:725..2655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score161.4
Seed ortholog evalue1.9e-37
Seed eggNOG ortholog2880.D7FJK2
Preferred namerps29
Model size261
KEGG koko:K02980,ko:K20308
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.ribosomal protein
EggNOG OGsCOG0199@1,KOG3506@2759
Ec32 ortholog descriptionsimilar to 40S ribosomal protein S29
Ec32 orthologEc-04_006420.1
Cds size261
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462923.3220625-CDS-Ecto-sp13_S_contig1782:724..8911681462923.3220625-CDS-Ecto-sp13_S_contig1782:724..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1782 725..891 -
1681462923.3331256-CDS-Ecto-sp13_S_contig1782:2561..26551681462923.3331256-CDS-Ecto-sp13_S_contig1782:2561..2655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1782 2562..2655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1782.5412.1prot_Ecto-sp13_S_contig1782.5412.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1782 725..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1782.5412.1

>prot_Ecto-sp13_S_contig1782.5412.1 ID=prot_Ecto-sp13_S_contig1782.5412.1|Name=mRNA_Ecto-sp13_S_contig1782.5412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
SLSAFSACPRLSSQGHTRRSALLPPPAALHLLTMGSKALVNSHPKNFGKG
GRHCRVCSNQHGLIRKYGLYMCRQCFRVHATEIGFTK
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mRNA from alignment at Ecto-sp13_S_contig1782:725..2655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1782.5412.1 ID=mRNA_Ecto-sp13_S_contig1782.5412.1|Name=mRNA_Ecto-sp13_S_contig1782.5412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1782:725..2655- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTGAGTGCATTTTCAGCGTGCCCCCGCCTCTCCTCTCAGGGCCACAC
ACGCCGCTCCGCCCTCCTTCCTCCTCCGGCAGCTCTACACTTATGTGAGT
CATACCGTCCGAGAATGGTCCAATGGGTGGCTGCTACAACATCGTATTGA
TTGCGACTGGTTTGGTTGCTTGTGTTCACGAATCAGGCACACCGTCACCT
TGGGTGTTATCCAACCCCCAGCCATTTAGCTAAGACGCAGCAATGCACCG
TTCGGGAAGTGGTGTCCGGTCTGATGTCGTGAGAGTCTGCCTGAAAAGGC
GAACACTAACCCTTTCACAACCCTCTGAGGATCTCGAGGCTCTACAGGAC
ACGTGTTGAAGCTCTGAGCACGTGCTATGATTCATCTCTTGCTTGGTGCG
ATCGACTTCTCAGCAACCAAAACACAAGTAGACGGCAGGAGCACCTGAGC
AACGTCCTTTTGCGAAGGGGGCTGGTGCTCCTGCAATGACTTGGTCTTAT
TGAATGAAGCAATGGCGTTGTCTCGCCCGGTGCTGCGGCCGTGCCCACCC
TACTTGTAGACCCAGCCCGTACCGCCTGTACTAATGCGCAACAATATGCG
GTTGTGTTATCATTTGGCAAGCACCGTGGCTTGAAAGCTTTTCTGCGTGA
GCCTCTCTCTGCGCTCTCTTATGCGTTTTCAACACGGATGTTTTAGGTAT
GGTGCAACACGGATGTTTTGGGTGTGGATGGATGTTCCAACAGCAGTGTT
GCTTTGGTACCAAGTTGTGACCCAACCAGAAAGTTCGTACAATCACGTGC
TTTGACACCGTTTCTCTTTACATTGAACAGTAGTGCATCGCATTTGCAAA
GTTTCGCGACGCTCTTGAAAAGTTGGAAATATCAAAATATCGACATAATG
CGGGGGCGTGTCTGCCTCCTAACGAAAGTCACCTTGGCGGCAAATGCCGC
CCCCACCCCCTGCAGGCGCGGGCCCTCACCCTGAGCACGTGTGGAGACGC
GGTGATGCGATCGTTTGGCATGTAAACCTAAGGTTGTGCCGTACAAGGAC
ACGTTGTTATTGGACCCTGTCGCCCGTGATCACAATGACAAATCATATTC
AGAGCGGGCTGACAACAGTGCACTCACAATGTGACTAGTGTAGCCTGATG
GGCTTGGCGACAGCGGTCAGCAGGTAAGTTTCCAGGAAGACATTCTCCGC
CATGATTTCGGAACTGACAGGCGAACAAATACATGATTCCACGGCGAACC
AACAACGTATGGAAAGATTTCGTCAGCGAGCTAGGGAAAAATTGTAACTG
GTGTGCGAGACGGCAGCAACCGGTGGGAGGGCACTGCGCAGTTCGGCAGG
GCGAAAGCGTCCGTTCACGCCCGGAAGCCCCCAAAGTGTTTGATTTCGTA
TCAAAGTGCGATGAAGCAAAAGCAGCTCCAAATTCCGCAACCAAAATGTT
TTCCTGTGGATCGTTGAAATCGTACAGCCGCAGTAGCAGCAAGGTGTCCA
GTATATCACGGTATCCCAAGCAATCATTCCCCTATCGCGAAATAGCCCTA
TCTCGCCAAAACTTGATATCACGTGGTGCGTGTTTAGCCTGGTTGAACTC
TGGTACGTTACCACGACCCGATCCGTCGATAGTTATTCGGCGATTGTCGG
CACTTTTGTGGCTGCCCTGCCCGATAATCATCTCATGCATTTTGGGTGCC
GTTGGCACCAATGACGCTGCCTTAATTTTTTGTGGCTTTGTTTCGTGTGC
TCCGCCGTTTTCAGTAACCATGGGTTCCAAGGCTTTGGTTAACTCGCACC
CGAAGAACTTCGGCAAAGGTGGACGCCACTGCCGCGTGTGCTCCAACCAG
CACGGGTTGATCCGCAAGTACGGACTCTACATGTGCCGTCAGTGCTTCCG
CGTGCACGCGACTGAAATTGGATTCACCAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1782:725..2655-

>mRNA_Ecto-sp13_S_contig1782.5412.1 ID=mRNA_Ecto-sp13_S_contig1782.5412.1|Name=mRNA_Ecto-sp13_S_contig1782.5412.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1782:725..2655- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTGAGTGCATTTTCAGCGTGCCCCCGCCTCTCCTCTCAGGGCCACAC
ACGCCGCTCCGCCCTCCTTCCTCCTCCGGCAGCTCTACACTTATTAACCA
TGGGTTCCAAGGCTTTGGTTAACTCGCACCCGAAGAACTTCGGCAAAGGT
GGACGCCACTGCCGCGTGTGCTCCAACCAGCACGGGTTGATCCGCAAGTA
CGGACTCTACATGTGCCGTCAGTGCTTCCGCGTGCACGCGACTGAAATTG
GATTCACCAAG
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