mRNA_Ecto-sp13_S_contig17781.5390.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17781.5390.1
Unique NamemRNA_Ecto-sp13_S_contig17781.5390.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17781.5390.1 vs. uniprot
Match: A0A6H5JRD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD4_9PHAE)

HSP 1 Score: 372 bits (956), Expect = 3.850e-128
Identity = 192/231 (83.12%), Postives = 200/231 (86.58%), Query Frame = 1 
Query:    1 QTYDDAAHPADITQSWSECDAQFCDYVEIATTMTITCATD---------------TNSTIASTCTNIAVSDLGSYSGTYREIAGTSSYEEIFYMAGGTDYYYVYLSNGAWFIQPNVVDYPKYRTYDDAAHPADITQSWAECDNTYCDYVEVATSMAITCAADTVNTTASTCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRV 648
            +TYDDAAHPADITQSWSECDAQFCDYVEI TTMTITCAT                 +   A+TCTNIAVSDLGSYSGTYRE+AGTSSYEE+FYMAGGTDYYYVYLSN AW+I PNVVDYPKYRTYDDAAHPADITQSWAECDN YCDYVEVATSMAITCAA       +TCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYL+NSAWYISPNVVDYPKYRV
Sbjct:   66 RTYDDAAHPADITQSWSECDAQFCDYVEITTTMTITCATAWLFLSHPRAACVSVAKSVKTAATCTNIAVSDLGSYSGTYREVAGTSSYEELFYMAGGTDYYYVYLSNSAWYISPNVVDYPKYRTYDDAAHPADITQSWAECDNVYCDYVEVATSMAITCAA-------ATCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLANSAWYISPNVVDYPKYRV 289
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BLAST of mRNA_Ecto-sp13_S_contig17781.5390.1 vs. uniprot
Match: D8LB13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB13_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 4.820e-126
Identity = 192/215 (89.30%), Postives = 200/215 (93.02%), Query Frame = 1 
Query:    1 QTYDDAAHPADITQSWSECDAQFCDYVEIATTMTITCATDTNSTIASTCTNIAVSDLGSYSGTYREIAGTSSYEEIFYMAGGTDYYYVYLSNGAWFIQPNVVDYPKYRTYDDAAHPADITQSWAECDNTYCDYVEVATSMAITCAADTVNTTASTCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLSNSAWYISPNVVDYPKYR 645
            +TYDDAAHPADITQSW+EC+AQFCDYVEIATTMTITCAT       +TCTNIAVSDLGSYSGTYRE+AGTSSY+E+FYMAGGTDYYYVYLS GAWFIQPNVVDYPKYRTYDDAAHPADITQSWAECDNTYCDYVEVATSMAITCAA       +TCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLSNSAWYISPNVVDYPKYR
Sbjct:  188 RTYDDAAHPADITQSWAECEAQFCDYVEIATTMTITCAT-------ATCTNIAVSDLGSYSGTYREVAGTSSYDELFYMAGGTDYYYVYLSGGAWFIQPNVVDYPKYRTYDDAAHPADITQSWAECDNTYCDYVEVATSMAITCAA-------ATCTSIAISGLGDFSGTYREIAGTSSYDELYYMAGGTDYYYVYLSNSAWYISPNVVDYPKYR 388
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BLAST of mRNA_Ecto-sp13_S_contig17781.5390.1 vs. uniprot
Match: A0A6H5JUT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.870e-25
Identity = 49/86 (56.98%), Postives = 64/86 (74.42%), Query Frame = 1 
Query:  142 TCTNIAVSDLGSYSGTYREIAGTSSYEEIFYMAGGTDYYYVYLSNGAWFIQPNVVDYPKYRTYDDAAHPADITQSWAECDNTYCDY 399
            TCT + +SD G +SGTY E+A TS Y++ + MA G + Y +YL NGAW +QP    YP+YRTYDDA++PADIT  W ECDN+YCD+
Sbjct:   84 TCTKVVLSDFGDFSGTYAEVADTS-YDKQYSMAAGVETYSIYLDNGAWNMQPIEAVYPRYRTYDDASNPADITLEWVECDNSYCDF 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17781.5390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JRD4_9PHAE3.850e-12883.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB13_ECTSI4.820e-12689.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUT7_9PHAE1.870e-2556.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17781contigEcto-sp13_S_contig17781:312..2997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size649
Hectar predicted targeting categoryother localisation
Exons6
Cds size375
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17781.5390.1prot_Ecto-sp13_S_contig17781.5390.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17781 1446..2997 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.5902832-UTR-Ecto-sp13_S_contig17781:311..4291681462921.5902832-UTR-Ecto-sp13_S_contig17781:311..429Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17781 312..429 +
1681462921.6101124-UTR-Ecto-sp13_S_contig17781:928..9491681462921.6101124-UTR-Ecto-sp13_S_contig17781:928..949Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17781 929..949 +
1681462921.6242766-UTR-Ecto-sp13_S_contig17781:1310..14451681462921.6242766-UTR-Ecto-sp13_S_contig17781:1310..1445Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17781 1311..1445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462921.641006-CDS-Ecto-sp13_S_contig17781:1445..14951681462921.641006-CDS-Ecto-sp13_S_contig17781:1445..1495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17781 1446..1495 +
1681462921.6538403-CDS-Ecto-sp13_S_contig17781:1804..19191681462921.6538403-CDS-Ecto-sp13_S_contig17781:1804..1919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17781 1805..1919 +
1681462921.672042-CDS-Ecto-sp13_S_contig17781:2418..24391681462921.672042-CDS-Ecto-sp13_S_contig17781:2418..2439Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17781 2419..2439 +
1681462921.6854134-CDS-Ecto-sp13_S_contig17781:2808..29971681462921.6854134-CDS-Ecto-sp13_S_contig17781:2808..2997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17781 2809..2997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17781.5390.1

>prot_Ecto-sp13_S_contig17781.5390.1 ID=prot_Ecto-sp13_S_contig17781.5390.1|Name=mRNA_Ecto-sp13_S_contig17781.5390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MGHGSYNQTLSTIRSTGHTTTPHILRTLPKAGPNAIILTVTTSKWRHPWP
SRARQIPSTPRHRRALASPSQAWETFPEPTGRLLAPVPTTSSTTWPEELI
TTTCTFPTAHGTYRLTLSTTRSTG*
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mRNA from alignment at Ecto-sp13_S_contig17781:312..2997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17781.5390.1 ID=mRNA_Ecto-sp13_S_contig17781.5390.1|Name=mRNA_Ecto-sp13_S_contig17781.5390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2686bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17781:312..2997+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACATACGACGACGCCGCACATCCCGCGGACATCACCCAGAGTTGGAG
CGAATGCGATGCTCAATTCTGCGACTACGTAGAAATTGCAACAACCATGA
CCATCACGTGCGCGACAGGTGAGGTTGAGCCTGGTACTTGTTAATGGGGA
AATTTCGCTCGAGAAGTGTCAAGGCATGCGTACTGTCGTTGGAAGAAGAT
GCCACAGTATTGGGTGGAAGGAGTACGTCAAGGTACCGCTTGCTCGGGTG
TCTCCACAAGATTTTGTGCAGAGCGAAGGCAAGCGCACGTTCCCGTAGCT
TCCCCCCCCCTCTCCCCCCGGACAAGTTCTCACACTCATCTGGCGTTGAA
CTACACGAACCTAATTATCTACAAATACCACGTCATTGACACTTGCGCTG
TGAATGCGGTCCCAGATTCTGACCTCCGCTGCAAGTGCTTAGTTTTCGCA
AATAATTTATTGCTCCGCCGTATCATTCCCCAAGTTTCGTGTTTCATTTT
TCGAGTATTGGCCGTCTCAAGCCGACTGTCGCTAGGTGTATTTGTGTGAG
GGAAGAAAGCTAAACGATCGTGACTCATCCCGTTCTGTTGTGTTCGTCGT
CTGTGCTGCCTCTGCAGATACGAACTCCACGATAGCATGTGAGACCCCAG
TGAACGTTGATCAGAACGTGGGCGCGTACAGGGCAGCTCGGTAATGACTA
CGACGACCGGGCACACCCTAGTTGCCCACGCTAAGGCTCCAGCTTTTGCC
GTGGTTATGCGTTGAGTGGATACACCTGCGCTAAATTGCTGTAGCGTTCC
TGCGTGGCCGTGCGCAAACCACTTTGAAGAGTACGCTGCTGGCTTGTGTC
CATTGTTGTCTTCGCTTATGTCTGTTGGCCCTAGCAACATCTACCAGGAC
GCCTGCTGCATCCCTGATGCGCCAGTTGTGTAGCCTGGTTCTTTCTTTCT
CACGCGCATGCGGGTTGTGTATCCGTTGCCAAATCCGTAAAAAATGCAGC
GACGTGCACTAACATCGCCGTCTCGGACTTGGGGAGCTATTCCGGAACCT
ACCGGGAGATTGCTGGCACCAGTTCCTACGAAGAGATCTTCTACATGGCC
GGAGGGACCGATTACTACTACGTGTACCTTTCTAATGGGGCATGGTTCAT
ACAACCAAACGTTGTCGACTATCCGAAGTACAGGGTGAGTGAGTTCAATA
CCCCAGCATTCGAGAGGCGTCTCAAAGGCCGATCTTGCTTGCTGTAGCGG
CCTTGTGTGATGCATTCCCTCAAGGTTGTTTTGTGCCCCACAGCATTTCG
TCGCGATGCGTCGAAAACGATAGATGCATGAGGGTCAAAGACCCCCCGAT
ATACTGGTGTTTTACCGTCGTCCTTGTTTTTTCCCCGTGATGCTTGATGT
ATATAGTGCGACGAATCTGTGATGTGGGGTTCTTTCCGAAATCATTCAAT
GGTGAGTTGCGCACCCCGTACCCCTGCTTCTTACGTAACACAGACATACG
ACGACGCCGCACATCCTGCGGACATTACCCAAAGCTGGGCCGAATGCGAT
AATACTTACTGTGACTACGTCGAAGTGGCGACATCCATGGCCATCACGTG
CGCGGCAGGTGAGATTGGGCCTTGTACGTCCCCAGTCAGGACTTTCAGTC
GACAAGTTCAACGCATACGTAGCTGCAAGAGGGTAACGCCATATCGGGCA
GCAGAAACAAGTTAGCCTCCCGCACGTCCAAGTTTCCATGTTTTTGTGCA
TGACGAAGGGAAAGACCAGTCTCTGCAAGCCTCCCACCCCTCGGGACAAC
TTGCACATGGCGTTGAACGACGCCATCCCAATCGTCTTCAAATACCACAC
TCGCGTGCGCTGTCAAATCACACGTGCGCTGTCAATACGTTCGCAAGTTC
TCACCTCTGCCGCAACTGTAATTTTCTTTCGTGAAGCATTTTACTACTGA
GCCGTATGATCTCCCCAGTTTTGGGTGCTATTTTTTCGGGTATTCACCGC
CTCCAGCCGCGACGGTAGCTACGTGGATTAGGTCTGAGAGGGAAAGCAGC
TAACCAATGCGACCCAACCCGTTCGTTCGATGTTCGTCGTCTGTGCCGCC
TCTGCAGATACCGTCAACACCACGGCATGTGAGACCCGAGCGGACGTTGA
CCAGAACTTGGGCGCGCATAAAAAAATACCTCGCTACTTCTTTGTTACTT
AAGGCAACAATTGGCGCGCCCCATGTTTACACATTTCCCGTTCATCGTTT
CCACTCCCTCTAAATAGTTGTATCCTTCCTCAGTTGCCGTGCATAGACTC
CTTTATAGAGTGCGCCACCACTTTGTGTCCATCGTCTTATTGTGCGATTG
CCATGGACGATAGCAAATTGCCAGCGAGACGCTCTGGTTTATCGCTGACG
CTCGAGAAACGTAGGTAGTTGTTTCGTCAACACGTTGTTGTTTCTCTGTC
ATCCTCACAAGCGTTGGTTTTTCGTTTCCAAATTCGTCAAAATACAGCGA
CGTGCACTAGCATCGCCATCTCAGGCTTGGGAGACTTTTCCGGAACCTAC
CGGGAGATTGCTGGCACCAGTTCCTACGACGAGCTCTACTACATGGCCGG
AGGAACTGATTACTACTACGTGTACCTTTCCAACAGCGCATGGTACATAT
CGCCTAACGTTGTCGACTACCCGAAGTACAGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17781:312..2997+

>mRNA_Ecto-sp13_S_contig17781.5390.1 ID=mRNA_Ecto-sp13_S_contig17781.5390.1|Name=mRNA_Ecto-sp13_S_contig17781.5390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17781:312..2997+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCATGGTTCATACAACCAAACGTTGTCGACTATCCGAAGTACAGG
ACATACGACGACGCCGCACATCCTGCGGACATTACCCAAAGCTGGGCCGA
ATGCGATAATACTTACTGTGACTACGTCGAAGTGGCGACATCCATGGCCA
TCACGTGCGCGGCAGATACCGTCAACACCACGGCATCGACGTGCACTAGC
ATCGCCATCTCAGGCTTGGGAGACTTTTCCGGAACCTACCGGGAGATTGC
TGGCACCAGTTCCTACGACGAGCTCTACTACATGGCCGGAGGAACTGATT
ACTACTACGTGTACCTTTCCAACAGCGCATGGTACATATCGCCTAACGTT
GTCGACTACCCGAAGTACAGGGTGA
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