mRNA_Ecto-sp13_S_contig17718.5363.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17718.5363.1
Unique NamemRNA_Ecto-sp13_S_contig17718.5363.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: D7FTF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTF6_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 7.600e-43
Identity = 67/70 (95.71%), Postives = 68/70 (97.14%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CPSSCSGHGKCLSMSEAASEWDGRVLVRP VVYTSVWDA +LHGCVCDPGWMGHDCSQLECPRGDDPFTT
Sbjct:  121 CPSSCSGHGKCLSMSEAASEWDGRVLVRPSVVYTSVWDADILHGCVCDPGWMGHDCSQLECPRGDDPFTT 190
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A7S0JRF9_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JRF9_CAFRO)

HSP 1 Score: 99.4 bits (246), Expect = 1.040e-22
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFT 207
            C S CSGHG+C+SM EAA+E +G  L+R  V+Y   WDA VL GCVCDP W G+DCSQ  CPRGDDP T
Sbjct:  129 CASDCSGHGRCMSMREAAAEVNGFSLLRK-VLYDEPWDADVLRGCVCDPEWEGYDCSQRRCPRGDDPLT 196
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A5A8DK87_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DK87_CAFRO)

HSP 1 Score: 99.4 bits (246), Expect = 1.080e-22
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFT 207
            C S CSGHG+C+SM EAA+E +G  L+R  V+Y   WDA VL GCVCDP W G+DCSQ  CPRGDDP T
Sbjct:  111 CASDCSGHGRCMSMREAAAEVNGFSLLRK-VLYDEPWDADVLRGCVCDPEWEGYDCSQRRCPRGDDPLT 178
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A7S1XM25_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XM25_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.530e-22
Identity = 39/68 (57.35%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    7 SSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            S CSGHG C+++SEA  +W+GR L RP +VY   WDAH + GCVCD G+ G +CS++ CP GDDP TT
Sbjct:  130 SECSGHGNCMTISEATFQWNGRNLSRPGLVYDESWDAHKITGCVCDHGFQGFNCSEIACPAGDDPKTT 197
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A7S2WG44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WG44_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.850e-22
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   13 CSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            C G G+CLS+ +A S WDG+ L RP+  YT  WDA  + GCVCD G+ G+DCS+ +CP GDDP TT
Sbjct:  128 CGGRGQCLSLRQAGSSWDGQALTRPNAPYTDPWDADKIFGCVCDMGFTGYDCSERQCPSGDDPLTT 193
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A7S2RYU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYU0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.770e-21
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   13 CSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            C G G+CLS+ +A S WDG+ L RP+  YT  WDA  + GCVCD G+ G+DCS+ +CP GDDP TT
Sbjct:  128 CGGRGQCLSLRQAGSSWDGQALTRPNAPYTDPWDADKIFGCVCDMGFTGYDCSERQCPSGDDPLTT 193
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A7S4A8Q6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8Q6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.820e-19
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 
Query:    1 CPSS-----CSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFT 207
            CP+S     CSGHG+C++   AAS WDGR L+RPHV Y   WDA  + GC+CD G+ G +CS+++CPRGD P T
Sbjct:  109 CPTSLDGTICSGHGQCVTSGWAASHWDGRNLLRPHVEYPH-WDAEKISGCLCDRGFSGFNCSRVDCPRGDVPET 181
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A0P1A7V1_PLAHL (Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7V1_PLAHL)

HSP 1 Score: 85.5 bits (210), Expect = 7.910e-18
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGR-VLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP+SCSG+G+C+S+ +AA  +D R   VR    YT +WDA  + GC CDPG++G DCS+ ECP+GD+PFTT
Sbjct:   84 CPNSCSGNGRCVSIRDAAELYDDRNFFVR--TTYT-LWDADKIMGCQCDPGYIGFDCSERECPKGDNPFTT 151
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: D0NQ83_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQ83_PHYIT)

HSP 1 Score: 82.4 bits (202), Expect = 9.580e-17
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP++CSG+G+C+SM +AA+  D R  +     Y S+WDA  + GC CDPG+ G DCSQ ECP+GD+P TT
Sbjct:  106 CPNACSGNGRCISMRDAATLQDDRNFL-VSTTY-SLWDADKIMGCQCDPGFSGFDCSQRECPKGDNPLTT 173
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BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Match: A0A0W8D933_PHYNI (EGF-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D933_PHYNI)

HSP 1 Score: 80.5 bits (197), Expect = 4.530e-16
Identity = 37/70 (52.86%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 CPSSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPGWMGHDCSQLECPRGDDPFTT 210
            CP+ CSG+G+C+SM +AA+  D R        Y S+WDA  + GC CDPG+ G DCSQ ECP+GD+P TT
Sbjct:  107 CPNLCSGNGRCISMRDAATIQDDRNFF-VSTTY-SLWDADKIMGCQCDPGFTGFDCSQRECPKGDNPLTT 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17718.5363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTF6_ECTSI7.600e-4395.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0JRF9_CAFRO1.040e-2263.77Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A5A8DK87_CAFRO1.080e-2263.77Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A7S1XM25_9STRA9.530e-2257.35Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WG44_9STRA9.850e-2256.06Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2RYU0_9STRA1.770e-2156.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4A8Q6_9STRA4.820e-1954.05Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0P1A7V1_PLAHL7.910e-1854.93Teneurin-1 and related extracellular matrix protei... [more]
D0NQ83_PHYIT9.580e-1752.86Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A0W8D933_PHYNI4.530e-1652.86EGF-like domain-containing protein n=10 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17718contigEcto-sp13_S_contig17718:3413..3622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score156.4
Seed ortholog evalue5e-36
Seed eggNOG ortholog2880.D7FTF6
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.regulation of canonical Wnt signaling pathway involved in osteoblast differentiation
EggNOG OGsKOG1225@1,KOG1225@2759
Cds size210
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462919.4669056-CDS-Ecto-sp13_S_contig17718:3412..36221681462919.4669056-CDS-Ecto-sp13_S_contig17718:3412..3622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17718 3413..3622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17718.5363.1prot_Ecto-sp13_S_contig17718.5363.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17718 3413..3622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17718.5363.1

>prot_Ecto-sp13_S_contig17718.5363.1 ID=prot_Ecto-sp13_S_contig17718.5363.1|Name=mRNA_Ecto-sp13_S_contig17718.5363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
CPSSCSGHGKCLSMSEAASEWDGRVLVRPHVVYTSVWDAHVLHGCVCDPG
WMGHDCSQLECPRGDDPFTT
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mRNA from alignment at Ecto-sp13_S_contig17718:3413..3622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17718.5363.1 ID=mRNA_Ecto-sp13_S_contig17718.5363.1|Name=mRNA_Ecto-sp13_S_contig17718.5363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17718:3413..3622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCATCAAGTTGTTCCGGGCATGGGAAGTGCCTATCGATGTCTGAGGC
AGCCTCGGAGTGGGATGGGAGAGTCCTCGTTAGGCCGCACGTCGTGTACA
CATCGGTGTGGGACGCGCATGTCTTGCACGGCTGCGTCTGCGACCCGGGG
TGGATGGGCCACGACTGTAGCCAGCTGGAGTGTCCGAGGGGAGACGACCC
GTTCACGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17718:3413..3622+

>mRNA_Ecto-sp13_S_contig17718.5363.1 ID=mRNA_Ecto-sp13_S_contig17718.5363.1|Name=mRNA_Ecto-sp13_S_contig17718.5363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17718:3413..3622+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCATCAAGTTGTTCCGGGCATGGGAAGTGCCTATCGATGTCTGAGGC
AGCCTCGGAGTGGGATGGGAGAGTCCTCGTTAGGCCGCACGTCGTGTACA
CATCGGTGTGGGACGCGCATGTCTTGCACGGCTGCGTCTGCGACCCGGGG
TGGATGGGCCACGACTGTAGCCAGCTGGAGTGTCCGAGGGGAGACGACCC
GTTCACGACG
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