mRNA_Ecto-sp13_S_contig17708.5358.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17708.5358.1
Unique NamemRNA_Ecto-sp13_S_contig17708.5358.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17708.5358.1 vs. uniprot
Match: A0A6H5KBR4_9PHAE (Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBR4_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 1.580e-64
Identity = 141/211 (66.82%), Postives = 148/211 (70.14%), Query Frame = -3 
Query:    3 MVAPTKKADLSRVKEEAGTAPPIAKTMASGTTXXXXXXXXTPQQQHKKAGVMPLPSTTAGTPQPSAAAMASMFGSFPGMFNAAAFAAAXXXAFPAGAKGLPKLAPVAPAXXXXXSPPVLCPPPKTXXXXXXXXXXXXXXXXXXXXXXXXSETASATAADAVKLEDVKGGTGGPLPAGRIAGGEHQAVSPQQSAALGAAGIGGIAGGAGTPP 635
            M APTKK DLSRVKEEAGT PPIA +MAS TT        TPQQQ KK GVMPLP TTAGTPQPSAAAMASMFGSFPGMFNAAAFAAA   AFPAGAKGLPKLAPVA A     SP VLC  PKT                         ET  ATAADAVKLE+VKGG GG LPAG IAGG  QA+SPQ+ A+LGAAG+GG+AG  GTPP
Sbjct:    1 MAAPTKKVDLSRVKEEAGTDPPIAISMASDTTTTPSTTNVTPQQQ-KKVGVMPLPPTTAGTPQPSAAAMASMFGSFPGMFNAAAFAAAAAAAFPAGAKGLPKLAPVAAATPATGSPAVLCLAPKTPAAAAGKPPSSKRRKRGRNEDGDAPETGGATAADAVKLEEVKGGAGGALPAGSIAGGGKQAISPQRVASLGAAGMGGVAGXXGTPP 210
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BLAST of mRNA_Ecto-sp13_S_contig17708.5358.1 vs. uniprot
Match: D7FWU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU6_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.440e-34
Identity = 105/144 (72.92%), Postives = 110/144 (76.39%), Query Frame = -3 
Query:    3 MASMFGSFPGMFNAAAFAAAXXXAFPAGAKGLPKLAPVAPAXXXXXSPPVLCPPPKTXXXXXXXXXXXXXXXXXXXXXXXXSETASATAA-DAVKLEDVKGGTGGPLPAGRIAGGEHQAVSPQQSAALGAAGIGGIAGGAGTPP 431
            MASMFGSFPGMFNAAAFAAAXXX    GAKGLPKLAPV   XXXXXSP VLC  PKT  XXXXXXXXXXXX           ET  ATAA DAVKLE+V G  GGPLPAGRIAG E QA+SPQQ A+LGAAG+GG+AGG G PP
Sbjct:    1 MASMFGSFPGMFNAAAFAAAXXXXXXXGAKGLPKLAPVXXXXXXXXSPAVLCLAPKTTAXXXXXXXXXXXXKRGRNEDGDAPETGGATAAADAVKLEEVNGAAGGPLPAGRIAGREQQAISPQQVASLGAAGMGGVAGGGGAPP 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17708.5358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KBR4_9PHAE1.580e-6466.82Protein CASP (Fragment) n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU6_ECTSI5.440e-3472.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17708contigEcto-sp13_S_contig17708:629..1433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size805
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462918.9679008-UTR-Ecto-sp13_S_contig17708:628..6551681462918.9679008-UTR-Ecto-sp13_S_contig17708:628..655Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17708 629..655 +
1681462918.9888077-UTR-Ecto-sp13_S_contig17708:1078..14331681462918.9888077-UTR-Ecto-sp13_S_contig17708:1078..1433Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17708 1079..1433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462918.977041-CDS-Ecto-sp13_S_contig17708:655..10781681462918.977041-CDS-Ecto-sp13_S_contig17708:655..1078Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17708 656..1078 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17708.5358.1prot_Ecto-sp13_S_contig17708.5358.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17708 656..1078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17708.5358.1

>prot_Ecto-sp13_S_contig17708.5358.1 ID=prot_Ecto-sp13_S_contig17708.5358.1|Name=mRNA_Ecto-sp13_S_contig17708.5358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MPPIPAAPRAADCCGETAWCSPPAILPAGKGPPVPPFTSSSFTASAAVAL
AVSEASSSSFRPRFLRLLGEGLPAAAADVFGGGHNTGGEAAAAAAGATGA
SLGSPFAPAGKAAAAAAANAAALNIPGKLPNMEAMAAAEG*
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mRNA from alignment at Ecto-sp13_S_contig17708:629..1433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17708.5358.1 ID=mRNA_Ecto-sp13_S_contig17708.5358.1|Name=mRNA_Ecto-sp13_S_contig17708.5358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=805bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17708:629..1433+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGGCGTCCCTGCCCCTCCGGCTATGCCCCCAATCCCCGCGGCTCC
GAGAGCAGCCGACTGCTGCGGAGAGACGGCTTGGTGTTCCCCGCCGGCTA
TCCTGCCCGCAGGTAAGGGTCCCCCTGTTCCTCCCTTCACATCCTCGAGC
TTCACGGCATCGGCTGCTGTAGCGCTCGCTGTCTCCGAGGCATCGTCATC
TTCGTTTCGGCCACGCTTTCTCCGCTTGCTGGGCGAGGGCTTGCCGGCGG
CGGCAGCAGATGTCTTTGGTGGCGGACACAACACCGGCGGCGAAGCTGCT
GCCGCTGCCGCTGGTGCAACCGGTGCCAGCTTGGGCAGCCCCTTCGCCCC
CGCGGGAAAAGCGGCCGCCGCTGCCGCCGCGAACGCGGCGGCGTTGAACA
TCCCCGGGAAGCTGCCGAACATGGAGGCCATGGCTGCTGCTGAAGGCTGA
GGCGTCCCGGCTGTTGTTGATGGCAGCGGCATCACGCCCGCTTTTTTGTG
TTGTTGCTGGGGTGTGACGTTGTTCGAGCTCGGAGTTGTTGTGGTACCAG
AGGCCATCGTTTTTGCGATAGGTGGAGCAGTGCCGGCTTCCTCTTTGACC
CTGCTCAGGTCTGCTTTCTTCGTTGGAGCCACCATGGGCTGGCTCACTAG
GACCGTTCCCAGTCCCGCTCCACTCTTGGCGGCGTTAATCCTTCCACGTG
GAACGCTGTGTCTCAGGCAAGCTCCAGGACTCGAAAACGCCCGTGAGCTC
GTCGGCCAGCGGCACACCTGATGTTCGATTTCGTTTTTTTCCTTTCAAAT
AGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17708:629..1433+

>mRNA_Ecto-sp13_S_contig17708.5358.1 ID=mRNA_Ecto-sp13_S_contig17708.5358.1|Name=mRNA_Ecto-sp13_S_contig17708.5358.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17708:629..1433+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCAATCCCCGCGGCTCCGAGAGCAGCCGACTGCTGCGGAGAGAC
GGCTTGGTGTTCCCCGCCGGCTATCCTGCCCGCAGGTAAGGGTCCCCCTG
TTCCTCCCTTCACATCCTCGAGCTTCACGGCATCGGCTGCTGTAGCGCTC
GCTGTCTCCGAGGCATCGTCATCTTCGTTTCGGCCACGCTTTCTCCGCTT
GCTGGGCGAGGGCTTGCCGGCGGCGGCAGCAGATGTCTTTGGTGGCGGAC
ACAACACCGGCGGCGAAGCTGCTGCCGCTGCCGCTGGTGCAACCGGTGCC
AGCTTGGGCAGCCCCTTCGCCCCCGCGGGAAAAGCGGCCGCCGCTGCCGC
CGCGAACGCGGCGGCGTTGAACATCCCCGGGAAGCTGCCGAACATGGAGG
CCATGGCTGCTGCTGAAGGCTGA
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