mRNA_Ecto-sp13_S_contig17702.5356.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: A0A6H5KAN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN8_9PHAE) HSP 1 Score: 375 bits (963), Expect = 1.510e-129 Identity = 204/228 (89.47%), Postives = 211/228 (92.54%), Query Frame = 1
Query: 1 DNEELHLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSFIMRRGKRGEVDSSEEKDRS 684
DNEEL+LVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSS+S LAARAGGGYANAWGCARGLVAE GLR GLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLP YP ++ V MQSAGASGAGM+STASVMWKT GLAPFYRGLSPTIVRAMVNHAATFLVYEASMS IMRRG+ G+VDSSEEKDRS
Sbjct: 47 DNEELNLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSSSPLAARAGGGYANAWGCARGLVAERGLRRGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPIYPADV------VKSRMQSAGASGAGMISTASVMWKTEGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSVIMRRGRSGDVDSSEEKDRS 268
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: D7FY68_ECTSI (Similar to Mitochondrial ornithine transporter 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY68_ECTSI) HSP 1 Score: 370 bits (951), Expect = 3.200e-125 Identity = 199/222 (89.64%), Postives = 208/222 (93.69%), Query Frame = 1
Query: 1 DNEELHLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSFIMRRGKRGEVDSS 666
DNEEL+LVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSS+PS++SSLAARAGGGYANAWGCARGLVAE+GLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLG GSGEDSSRGPVLLKTAVSGALAGIAAWLPTYP ++ V MQSAG SGAGM+STASVMWKT GLAPFYRGLSPTIVRAMVNHAATFLVYEASMSFIMRRG+RGEV SS
Sbjct: 195 DNEELNLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSSPSASSSLAARAGGGYANAWGCARGLVAEHGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGNGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPADV------VKSRMQSAGGSGAGMISTASVMWKTEGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSFIMRRGRRGEVASS 410
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: F0YBX9_AURAN (ZZ-type domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBX9_AURAN) HSP 1 Score: 126 bits (317), Expect = 1.220e-29 Identity = 78/207 (37.68%), Postives = 108/207 (52.17%), Query Frame = 1
Query: 22 VDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSFIMRRG 642
V L +AA SG G FV TPVER+KVVMQA + P + C R ++A++G+ G L GLG TL RE+P Y FYF+ YE L G P L + GA AG A+W+P YP +++ + A GAG + A +++ GG+ F+ G+SP + RA+VNHA TFLV+E + S + G
Sbjct: 1591 VGLALAACASGAAGGFVCTPVERLKVVMQAGYAGGPLA-----------------CFRDIIAQDGVSGLLTRGLGATLAREIPAYFFYFSAYEVVSGALAGSV--------PAALIPLLGGATAGAASWVPVYPIDVVKTAVQSET---GAAGDGAGALDVARALYRQGGVGVFWDGISPKLARAVVNHAVTFLVFEQTCSLWLAAG 1769
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: A0A0D2VZ19_CAPO3 (Solute carrier family 25 n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VZ19_CAPO3) HSP 1 Score: 110 bits (276), Expect = 5.520e-25 Identity = 78/205 (38.05%), Postives = 111/205 (54.15%), Query Frame = 1
Query: 34 VAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPV-PVPMQSAGASGA------GMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSF 627
+A+ +GLV + VVTPVER+KV MQA+ A ST C LV G+ GGL+ G PT+LREVP Y YF +Y+ KR G + S+ P LL A++G +AG+ AW+P YP +++ + P A +SG+ G++ A ++ GL F+RGL+PTI RA HAA FL YE ++ +
Sbjct: 192 LASCSAGLVATIVVTPVERVKVSMQASGGKAFKSTLD--------------CVLSLVRTAGISGGLFKGFVPTVLREVPSYGAYFISYDMAKRAFCQPGQ-DVSTLSPGLL--ALAGGIAGVMAWVPIYPIDVIKSRIQAQPSSALVAASSGSSSRPYSGVVDCAVRSYRAEGLGVFFRGLTPTIARAFPCHAAVFLGYELTLRY 379
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: A0A7S2CQ56_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CQ56_9EUKA) HSP 1 Score: 105 bits (261), Expect = 8.070e-25 Identity = 66/175 (37.71%), Postives = 95/175 (54.29%), Query Frame = 1
Query: 88 RIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYE 612
RIKVVMQA+ +S SS C R + ++GL G L+ GLG TLLRE+P Y+ YF YEA K LL ++ P + + + GA AG+ +W+P YP +++ L + G + A+ +W TGGLA F+ GL P + RA+VNHAATF +++
Sbjct: 1 RIKVVMQASSASTFSSPVE--------------CLRLVAQDDGLDGLLFRGLGATLLREIPAYSGYFLAYEAVKMWLL-------AAAFPTPMISLIGGAAAGVMSWVPVYPIDVIKTNLQASI----GDGGGRSFVGAAAEIWATGGLAAFWDGLGPKLARAVVNHAATFFIFD 150
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: A0A197JQH7_9FUNG (Mitochondrial carrier n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JQH7_9FUNG) HSP 1 Score: 108 bits (270), Expect = 1.030e-24 Identity = 73/205 (35.61%), Postives = 113/205 (55.12%), Query Frame = 1
Query: 13 LHLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPV-LLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAG-MMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASM 621
L L +G+A G+G+V + + +PVE +K+ MQA + + Y+ CAR L+ E+G+R GL G T++RE+PGYA ++A +E KR L G E+ + P+ LL SGA G++ W YP ++L + + Q+ GA ++ A +++ GG+ PF+RG SPTI+RA+ AATF YE M
Sbjct: 105 LTLTQIGIAGAGAGIVNAVLASPVELLKIKMQAQYGAGSTVR----------YSGPVDCARQLIKEHGIRHGLMRGYWITVIREIPGYAGFYAGFEGMKRYLTPVG--ENPATYPLGLLSLMASGASGGVSYWFACYPLDMLKSM----IQNQNNPPKGAFYIVDAAKQVYREGGIKPFFRGFSPTIIRAVPAAAATFTTYELVM 293
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: K0R061_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R061_THAOC) HSP 1 Score: 108 bits (269), Expect = 1.960e-24 Identity = 72/211 (34.12%), Postives = 103/211 (48.82%), Query Frame = 1
Query: 1 DNEELHLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASMSFIM 633
D + V L +AA SG V SF+V PVER+KV+MQA +S YAN C + ++ G G GLGPTL REVP YA YF Y + G L V GAL+G A W+P YP +++ ++ + G A + A +++ G++ F+ GL+P ++RA VNHA TF +Y M ++
Sbjct: 133 DGQTQTFVSLLLAASFSGFVTSFLVAPVERVKVMMQAQQNSV--------------YANELECIQAVLENEGWGGLFSRGLGPTLAREVPSYAIYFVVYGLLIKTSTASSIGS--------LAPLVCGALSGCACWVPVYPIDVVKTLV-----QNTEGGDSASSIDVAIQLYQDEGISAFFNGLTPKMLRASVNHAVTFWIYALMMDALV 316
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: A0A7S2BS92_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BS92_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.850e-24 Identity = 72/196 (36.73%), Postives = 100/196 (51.02%), Query Frame = 1
Query: 28 LGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEA 615
L +AA SG SFV TPVERIK VMQA+ G YA+ C ++ E+G+ G L GL TL RE+P Y Y YE K L+ D+ P+ + + GA AG+ +W+P YP +++ + G A ++KTGG+ F+ GLS ++RA+VNHA TFLV+EA
Sbjct: 67 LAIAAAISGAAASFVCTPVERIKCVMQASEK--------------GAYASPTACIGRVIEEDGVSGLLGRGLLVTLFREIPSYVGYLLGYEFMKSFLI------DTGAVPLAVVPIIGGAFAGVMSWVPVYPIDVVKTNI-----QAKEGGETETPFEVAVQLFKTGGVMVFWDGLSSKVLRAVVNHAVTFLVFEA 237
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: A0A0G4HKR9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HKR9_9ALVE) HSP 1 Score: 108 bits (270), Expect = 4.610e-24 Identity = 78/200 (39.00%), Postives = 105/200 (52.50%), Query Frame = 1
Query: 13 LHLVDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYE 612
L L VAAM +GLV SFVV P ERIKV++Q+ LS T G Y++ R ++ G +G + GLGPT+ REVP Y YF Y + + +G G L V GA AG A WLP YP +++ V + A GA + TA +W GG+ F+ GL+P +VRA+VNHA TF V++
Sbjct: 201 LSAFGLLVAAMFAGLVTSFVVAPFERIKVMLQS-LSEGGKETEK--ETDGFSYSDELSAWRAVILAEGWKGLMLRGLGPTIAREVPSYGIYFVAYS----LFMSPQTGATDLLGA--LAPLVGGAAAGCACWLPVYPIDVVKTAQQSTVGGSAEDAKGA--IETAREIWDRGGVGAFFDGLTPKLVRAVVNHAVTFFVFD 389
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Match: B8C9C7_THAPS (Mitochondrial carrier protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9C7_THAPS) HSP 1 Score: 105 bits (263), Expect = 8.110e-24 Identity = 67/200 (33.50%), Postives = 98/200 (49.00%), Query Frame = 1
Query: 22 VDLGVAAMGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCARGLVAENGLRGGLYAGLGPTLLREVPGYAFYFATYEACKRVLLGKGSGEDSSRGPVLLKTAVSGALAGIAAWLPTYPGELLLVVLPVPVPMQSAGASGAGMMSTASVMWKTGGLAPFYRGLSPTIVRAMVNHAATFLVYEASM 621
V L +AA SG V SF+V PVER+KV+MQA + YAN C + ++ G G GLGPTL RE+P Y YF Y + + + G + V GA++G A W+P YP +++ ++ + G A + A ++ G+ F+ GL+P ++RA VNHA TF VY+ M
Sbjct: 109 VTLLLAASFSGFVTSFLVAPVERVKVMMQAQQDAT--------------YANEIECIKAVLENEGWTGLFSRGLGPTLAREIPSYGIYFVVYGVLMQTTMAQSLGS--------VAPLVFGAMSGCACWIPVYPIDVVKTLV-----QNTEGGDSANSIEVAVQLYNEEGIGAFFNGLTPKMIRASVNHAVTFFVYDLMM 281 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17702.5356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17702.5356.1 >prot_Ecto-sp13_S_contig17702.5356.1 ID=prot_Ecto-sp13_S_contig17702.5356.1|Name=mRNA_Ecto-sp13_S_contig17702.5356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp MGSGLVGSFVVTPVERIKVVMQAALSSAPSSTSSLAARAGGGYANAWGCAback to top mRNA from alignment at Ecto-sp13_S_contig17702:607..3243+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17702.5356.1 ID=mRNA_Ecto-sp13_S_contig17702.5356.1|Name=mRNA_Ecto-sp13_S_contig17702.5356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2637bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17702:607..3243+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17702:607..3243+ >mRNA_Ecto-sp13_S_contig17702.5356.1 ID=mRNA_Ecto-sp13_S_contig17702.5356.1|Name=mRNA_Ecto-sp13_S_contig17702.5356.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17702:607..3243+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |