mRNA_Ecto-sp13_S_contig17696.5353.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig17696.5353.1
Unique Name	mRNA_Ecto-sp13_S_contig17696.5353.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5L5C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C8_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.280e-62
Identity = 114/126 (90.48%), Postives = 116/126 (92.06%), Query Frame = 3

Query:  183 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPESDD 560
            RCRCKNKKCSLACGC NRCTLRR APAPVRA GRSAS PTVGA QTRRVEGTSRPQPPIESRPRPSYS ANAMALF ASMRQQESHGAEQNDVEA TPES ASKDVSAGEAAES+ AELEDPESD+
Sbjct:  181 RCRCKNKKCSLACGCSNRCTLRRAAPAPVRAGGRSASPPTVGASQTRRVEGTSRPQPPIESRPRPSYSAANAMALFAASMRQQESHGAEQNDVEAGTPESPASKDVSAGEAAESKRAELEDPESDE 306

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 8.750e-60
Identity = 117/124 (94.35%), Postives = 118/124 (95.16%), Query Frame = 3

Query:  183 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPES 554
            RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQT RVEGT RPQP IESRPRPSYSVANAMALF ASMRQQESHGAEQNDVEA TPES ASKDVSAGEAAES+NAELEDPES
Sbjct:  869 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASMRQQESHGAEQNDVEAGTPESLASKDVSAGEAAESKNAELEDPES 992

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.290e-59
Identity = 117/124 (94.35%), Postives = 118/124 (95.16%), Query Frame = 3

Query:  183 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPES 554
            RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQT RVEGT RPQP IESRPRPSYSVANAMALF ASMRQQESHGAEQNDVEA TPES ASKDVSAGEAAES+NAELEDPES
Sbjct: 1888 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASMRQQESHGAEQNDVEAGTPESLASKDVSAGEAAESKNAELEDPES 2011

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5JR25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR25_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 3.710e-58
Identity = 112/127 (88.19%), Postives = 117/127 (92.13%), Query Frame = 3

Query:  180 TRCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPESDD 560
            TRCRCKNKKCSLACGCRNRCTLRR A APVRA GRSASRPTVGA QTRRVEGTSRPQPPIESRP+PS SVANAMALF ASMRQQESHGAEQNDVEA +PES ASKDVSAGEAAES+ A+L DPESD+
Sbjct:  356 TRCRCKNKKCSLACGCRNRCTLRRAAAAPVRAGGRSASRPTVGASQTRRVEGTSRPQPPIESRPQPSDSVANAMALFAASMRQQESHGAEQNDVEAGSPESPASKDVSAGEAAESKRAQLGDPESDE 482

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5JLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL0_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 5.570e-41
Identity = 88/124 (70.97%), Postives = 104/124 (83.87%), Query Frame = 3

Query:  183 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPES 554
            RCRCK++KCSLAC CR+RCTLRR A APVRA GRSA RPTVGA QT  ++  +RPQPPI++RP+PS  VANAMALF AS++ +ESH AEQ+DVEA TPES AS DVS+GEAAES+N +L DPES
Sbjct:  264 RCRCKDRKCSLACRCRSRCTLRRAASAPVRAGGRSAFRPTVGASQTGPIDCVARPQPPIDTRPQPSLRVANAMALFIASIKPRESHAAEQSDVEAGTPESPASNDVSSGEAAESKNEDLHDPES 387

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.550e-40
Identity = 89/126 (70.63%), Postives = 100/126 (79.37%), Query Frame = 3

Query:  183 RCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPESDD 560
            RCRCK++KCSLACGCR  CTLR   PAPVRA G SASRPTV A QT  +EG +RPQPPI++RP+PS   ANAMALF ASM+Q ESHGAEQND E  T ES ASK VS+GEAA+S N ELE PESD+
Sbjct:  399 RCRCKDRKCSLACGCRGLCTLRWAVPAPVRAGGMSASRPTVDASQTGPIEGVARPQPPIDTRPQPSGLDANAMALFAASMKQHESHGAEQNDEETGTTESPASKGVSSGEAADSENDELEGPESDE 524

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5KZT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT5_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.250e-39
Identity = 84/123 (68.29%), Postives = 98/123 (79.67%), Query Frame = 3

Query:  192 CKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTASMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPESDD 560
            CK++KCSLACGCR  CTLRR APAPVRA G SASRPTVGA QT  +EG +R QPP+++RP+PS  V+NAM LF ASM+QQESHGAEQND E  T ES AS   S+G+AA+S N ELE PESD+
Sbjct:  275 CKDRKCSLACGCRGHCTLRRAAPAPVRAGGMSASRPTVGASQTGPIEGVARHQPPVDTRPQPSVLVSNAMTLFAASMKQQESHGAEQNDEETGTTESPASNGDSSGQAADSENEELEGPESDE 397

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5L8Z0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z0_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.210e-30
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 2

Query:    2 PALVGLYQSMTNMALYREIIASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKDEV 187
            PALVGLYQSMTNMALYREIIASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKDE 
Sbjct:  601 PALVGLYQSMTNMALYREIIASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKDEA 662

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5LEX8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.310e-29
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 2

Query:    2 PALVGLYQSMTNMALYREIIASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKD 181
            PALVGLYQSMTNMA Y EIIASETE+PGE WVWQTEGRDGRHP+TSGDLEGE+GDGEKKD
Sbjct:   57 PALVGLYQSMTNMARYPEIIASETEHPGEPWVWQTEGRDGRHPSTSGDLEGEEGDGEKKD 116

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BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Match: A0A6H5KVP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP6_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 7.290e-28
Identity = 55/62 (88.71%), Postives = 61/62 (98.39%), Query Frame = 2

Query:    2 PALVGLYQSMTNMALYREIIASETEYPGEAWVWQTEGRDGRHPTTSGDLEGEDGDGEKKDEV 187
            P+LVGLYQSMT+MALYREIIASETE+PGE WVWQTEGRDGRHPTTSGDLEGE+GDG+KK+EV
Sbjct:  236 PSLVGLYQSMTDMALYREIIASETEHPGEPWVWQTEGRDGRHPTTSGDLEGENGDGQKKNEV 297

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig17696.5353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5L5C8_9PHAE	2.280e-62	90.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KTG2_9PHAE	8.750e-60	94.35	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L6D9_9PHAE	1.290e-59	94.35	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JR25_9PHAE	3.710e-58	88.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JLL0_9PHAE	5.570e-41	70.97	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0U7_9PHAE	1.550e-40	70.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZT5_9PHAE	1.250e-39	68.29	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L8Z0_9PHAE	1.210e-30	98.39	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5LEX8_9PHAE	3.310e-29	90.00	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KVP6_9PHAE	7.290e-28	88.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig17696	contig	Ecto-sp13_S_contig17696:962..1753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	562
Hectar predicted targeting category	other localisation
Exons	2
Cds size	444

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462918.3723748-UTR-Ecto-sp13_S_contig17696:961..1077	1681462918.3723748-UTR-Ecto-sp13_S_contig17696:961..1077	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig17696 962..1077 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462918.3905442-CDS-Ecto-sp13_S_contig17696:1077..1145	1681462918.3905442-CDS-Ecto-sp13_S_contig17696:1077..1145	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig17696 1078..1145 +
1681462918.4000316-CDS-Ecto-sp13_S_contig17696:1377..1753	1681462918.4000316-CDS-Ecto-sp13_S_contig17696:1377..1753	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig17696 1378..1753 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig17696.5353.1	prot_Ecto-sp13_S_contig17696.5353.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig17696 1078..1753 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig17696:962..1753+
coding sequence from alignment at Ecto-sp13_S_contig17696:962..1753+

protein sequence of mRNA_Ecto-sp13_S_contig17696.5353.1

>prot_Ecto-sp13_S_contig17696.5353.1 ID=prot_Ecto-sp13_S_contig17696.5353.1|Name=mRNA_Ecto-sp13_S_contig17696.5353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MGGTLPPRATWRARTVMEKRRTRCRCKNKKCSLACGCRNRCTLRRVAPAP
VRAAGRSASRPTVGAPQTRRVEGTSRPQPPIESRPRPSYSVANAMALFTA
SMRQQESHGAEQNDVEARTPESTASKDVSAGEAAESRNAELEDPESDD

mRNA from alignment at Ecto-sp13_S_contig17696:962..1753+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig17696.5353.1 ID=mRNA_Ecto-sp13_S_contig17696.5353.1|Name=mRNA_Ecto-sp13_S_contig17696.5353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17696:962..1753+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGGCCTTGGTTGGGTTATACCAAAGCATGACGAACATGGCACTGTATC
GCGAGATCATCGCATCAGAGACCGAGTATCCTGGAGAGGCCTGGGTATGG
CAGACCGAAGGGCGAGATGGGCGGCACCCTACCACCTCGGGCGACTTGGA
GGGCGAGGACGGTGATGGAGAAAAGAAGGACGAGGTCAGTCAAGGAGCAG
TGGCGGTGTCGTTAGGGCCACGGACCGAGGAACAGGCCAGGCATATCGAC
AGCCTTAACCGCGACAGGCGATCTACGCATCGTAGGCTTCTAGTGATGTG
TACGGTGGTGGTGAAGGCCATTTACTTGACCTGTCCGAGTATGCTTACAT
CGCCCCTGACCGAAAGACAGTCACGCTTGCGTGTGGTTGCAATCCGGACA
CGGCCCTGTGTAACAGGTGCAGGTGCAAGAACAAGAAGTGCTCGCTCGCT
TGCGGCTGCAGAAACCGTTGCACCCTACGGCGGGTGGCGCCGGCACCCGT
GCGTGCAGCGGGGAGGTCTGCGTCACGGCCTACGGTGGGTGCTCCTCAAA
CTAGACGGGTAGAGGGTACCTCCCGACCCCAGCCACCTATCGAGAGTCGA
CCACGGCCATCCTACAGTGTTGCCAACGCCATGGCACTCTTTACCGCTTC
TATGAGGCAGCAGGAATCGCACGGAGCGGAACAGAACGACGTGGAGGCGA
GGACCCCCGAGTCGACTGCGAGCAAGGACGTTTCCGCCGGCGAGGCCGCG
GAATCCAGGAACGCAGAGTTGGAGGACCCCGAGTCGGACGAT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17696:962..1753+

>mRNA_Ecto-sp13_S_contig17696.5353.1 ID=mRNA_Ecto-sp13_S_contig17696.5353.1|Name=mRNA_Ecto-sp13_S_contig17696.5353.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17696:962..1753+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGGCACCCTACCACCTCGGGCGACTTGGAGGGCGAGGACGGTGAT
GGAGAAAAGAAGGACGAGGTGCAGGTGCAAGAACAAGAAGTGCTCGCTCG
CTTGCGGCTGCAGAAACCGTTGCACCCTACGGCGGGTGGCGCCGGCACCC
GTGCGTGCAGCGGGGAGGTCTGCGTCACGGCCTACGGTGGGTGCTCCTCA
AACTAGACGGGTAGAGGGTACCTCCCGACCCCAGCCACCTATCGAGAGTC
GACCACGGCCATCCTACAGTGTTGCCAACGCCATGGCACTCTTTACCGCT
TCTATGAGGCAGCAGGAATCGCACGGAGCGGAACAGAACGACGTGGAGGC
GAGGACCCCCGAGTCGACTGCGAGCAAGGACGTTTCCGCCGGCGAGGCCG
CGGAATCCAGGAACGCAGAGTTGGAGGACCCCGAGTCGGACGAT