prot_Ecto-sp13_S_contig17639.5334.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17639.5334.1
Unique Nameprot_Ecto-sp13_S_contig17639.5334.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length107
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17639.5334.1 vs. uniprot
Match: A0A087SF20_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SF20_AUXPR)

HSP 1 Score: 107 bits (268), Expect = 9.110e-28
Identity = 67/108 (62.04%), Postives = 75/108 (69.44%), Query Frame = 0 
Query:    1 MTNEGCPVAHPKLSRRPSARRMIAWPSSKMNLSTCGLMLSCLV--VATRPARSISLSKWPMFPTMALFFILAMSAAMMIPLFPVVVMKMSPVPTTVSSFTTRKPSIAA 106
            MTNEGCPVA P+LSRRPSA  M  WPS KM  ST GLM+  ++   ++RPA SISLSK PM PTMALFF+ AM  AMM+ LFPVVV KMS V    S   T  PSI A
Sbjct:   10 MTNEGCPVAQPRLSRRPSASTMTPWPSGKMKRSTWGLMVWRVMPGFSSRPAMSISLSKCPMLPTMALFFMAAMWRAMMMSLFPVVVTKMSAVDRQSSRGCTWYPSIVA 117
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BLAST of mRNA_Ecto-sp13_S_contig17639.5334.1 vs. uniprot
Match: A0A7K0CW95_9ACTN (Uncharacterized protein n=1 Tax=Streptomyces smaragdinus TaxID=2585196 RepID=A0A7K0CW95_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 1.220e-12
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 0 
Query:   26 PSSKMNLSTCGLMLSCLVVAT--RPARSISLSKWPMFPTMALFFILAMSAAMMIPLFPVVVMKMSPVPTTVS 95
            PS K+ + T GL  S  +  +  RPA SISLSKWPMFPT+A  FI AMS A M+ LFPVVVMKMS V TT S
Sbjct:    5 PSGKVQVWTWGLTSSFTIPGSWARPAMSISLSKWPMFPTIAWCFIRAMSEARMMSLFPVVVMKMSAVSTTSS 76
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BLAST of mRNA_Ecto-sp13_S_contig17639.5334.1 vs. uniprot
Match: A0A0B3SGF0_9RHOB (Uncharacterized protein n=1 Tax=Mameliella alba TaxID=561184 RepID=A0A0B3SGF0_9RHOB)

HSP 1 Score: 60.8 bits (146), Expect = 9.940e-10
Identity = 43/85 (50.59%), Postives = 52/85 (61.18%), Query Frame = 0 
Query:   22 MIAWPSSKMNLSTCGLMLSCLVVATRPARSISLSKWPMFPTMALFFILAMSAAMMIPLFPVVVMKMSPVPTTVSSFTTRKPSIAA 106
            M+  P     +STC LML  L   +  A  ISLSKWPM PT+A+ FI  M +  +  L PVVVMK+S + TT SS  T KPSIAA
Sbjct:    1 MMRCPLGSSIMSTCSLMLVHLWFFSA-ATWISLSKWPMLPTIAMSFISRMCSMRITSLLPVVVMKISALDTTSSSVVTSKPSIAA 84
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BLAST of mRNA_Ecto-sp13_S_contig17639.5334.1 vs. uniprot
Match: A0A7C9AKT5_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AKT5_OPUST)

HSP 1 Score: 53.5 bits (127), Expect = 1.200e-6
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 0 
Query:   51 SISLSKWPMFPTMALFFILAMSAAMMIPLFPVVVMKMSPVPTTVSSFTTRKPSIAA 106
            SISLSKWPM  TMALFFI  M + M++ L PVVV KMS   TT S   T +PSI A
Sbjct:    2 SISLSKWPMLQTMALFFIFLMWSTMIMSLLPVVVTKMSASETTSSKVRTWRPSIRA 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17639.5334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A087SF20_AUXPR9.110e-2862.04Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A7K0CW95_9ACTN1.220e-1261.11Uncharacterized protein n=1 Tax=Streptomyces smara... [more]
A0A0B3SGF0_9RHOB9.940e-1050.59Uncharacterized protein n=1 Tax=Mameliella alba Ta... [more]
A0A7C9AKT5_OPUST1.200e-660.71Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 44..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..106
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 52..60
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 61..84
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 32..43
NoneNo IPR availableTMHMMTMhelixcoord: 62..84
NoneNo IPR availableTMHMMTMhelixcoord: 30..47

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17639contigEcto-sp13_S_contig17639:1720..2040 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17639.5334.1mRNA_Ecto-sp13_S_contig17639.5334.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17639 780..3526 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17639.5334.1 ID=prot_Ecto-sp13_S_contig17639.5334.1|Name=mRNA_Ecto-sp13_S_contig17639.5334.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MTNEGCPVAHPKLSRRPSARRMIAWPSSKMNLSTCGLMLSCLVVATRPAR
SISLSKWPMFPTMALFFILAMSAAMMIPLFPVVVMKMSPVPTTVSSFTTR
KPSIAA*
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