mRNA_Ecto-sp13_S_contig17634.5333.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17634.5333.1
Unique NamemRNA_Ecto-sp13_S_contig17634.5333.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17634.5333.1 vs. uniprot
Match: D7G2J2_ECTSI (PPIase cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J2_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 4.630e-25
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:  175 KRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAAN 348
            KRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAAN
Sbjct:   14 KRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQENAERAKNQDALAAEAAN 71
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17634.5333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2J2_ECTSI4.630e-25100.00PPIase cyclophilin-type domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17634contigEcto-sp13_S_contig17634:1556..2818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score108.2
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D7G2J2
Model size350
KEGG koko:K01802
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
Cds size348
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462916.7319431-CDS-Ecto-sp13_S_contig17634:1555..16351681462916.7319431-CDS-Ecto-sp13_S_contig17634:1555..1635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17634 1556..1635 +
1681462916.7493913-CDS-Ecto-sp13_S_contig17634:2066..21631681462916.7493913-CDS-Ecto-sp13_S_contig17634:2066..2163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17634 2067..2163 +
1681462916.760113-CDS-Ecto-sp13_S_contig17634:2645..28161681462916.760113-CDS-Ecto-sp13_S_contig17634:2645..2816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17634 2646..2816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17634.5333.1prot_Ecto-sp13_S_contig17634.5333.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17634 1556..2816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17634.5333.1

>prot_Ecto-sp13_S_contig17634.5333.1 ID=prot_Ecto-sp13_S_contig17634.5333.1|Name=mRNA_Ecto-sp13_S_contig17634.5333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
AGVVCVFCLLDCPCFVASRTSRRRRRRARVLFAAASMSSWTEVMILMAWS
ICTATLTHKRAWEVDVEADDKDEGDDTTPSEAFLSLQRELEEKEKIQQEN
AERAKNQDALAAEAAN
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mRNA from alignment at Ecto-sp13_S_contig17634:1556..2818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17634.5333.1 ID=mRNA_Ecto-sp13_S_contig17634.5333.1|Name=mRNA_Ecto-sp13_S_contig17634.5333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1263bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17634:1556..2818+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGCGTCGTGTGTGTTTTCTGTTTGCTGGATTGTCCATGTTTCGTCGC
AAGCCGAACAAGCCGGAGGCGAAGAAGAAGGTGAAGATGTACGCAAATGA
AGCGGACAAAACCGTGAACGTGCACACTTGCAACGGGCAGGATTCAAAGT
GTTGGATTTGACATACATGTGATGCGACTCTCCAACCCATCGCAGCGTAC
ATCCCATCCGTGCTTTATAATTGTAGTGTGATATATCCGTACAGTTTTTG
GGCTCCTTGCTCTTCCAGTTCCGTTTTTCATGATGATGTAATACCAGCTA
GAAAGGTACGCCGCAGGTACCCACCGGTCTGTACTGCTGTAATGGATTTC
TCTATGTTTCGCCGCACACACATGCGCTCGTTGGAATATGCTCATGGAAG
AATAAACACACGCACAGAAAGATCACCATTTCGAGGTAATACTTGCTGGT
GTCATTTGTCATGGATGCAACGTTCGTTATCTTAAAATCTTTTCTCCTCC
GACTATTGCAGGGCCCGAGTCCTATTTGCGGCTGCTTCAATGTCAAGCTG
GACAGAAGTGATGATCTTGATGGCGTGGAGTATCTGTACTGCCACCCTGA
CCCATAAGGTCTCATTTGTAAACTTCACGTTGGCCGATGGTTGTATGTAG
ATGTGTGAAGTCGGCTTACTGTAGTTCCTCTCCAACAGGGTGCCGTGTTG
CTTTCAACTACACCGCAAAGCGGCGTTTATCTACCTTCCAGGAGAACGAT
ATAATGCGTACCCTGTTCTTAGACGTGGAGTGAAATACCATGTTGGAGGC
TAGCCGTGTCCCCGTAGTCGCCCGCGATGCCTGTGAGGTGCACGGCGTAG
ATGAAGTGGTTGCCCCACCAGTGCAGCGAGATTGACAGTACCAAATGATG
AAGGTCTTTGGGAAAACGCTCGTTCTCGTTCCCGAAAAACCCGTTTATTT
TTCGAGGACATTTAGCAGCTTCTAATTAGTAAATAGTATTTCGTTTTCGT
TCTTTGGCTTCGTCACATTTGTGCACGACAAGTCTAACCCCCCCCCTCTC
CCCCCCCCCGGTGCCCGGTGCGTGGACACTTGTTTCCCAGAGGGCCTGGG
AGGTGGATGTCGAGGCCGACGACAAAGATGAGGGGGATGACACTACCCCA
AGCGAGGCGTTTTTGTCGTTACAGAGGGAGCTGGAGGAGAAGGAGAAGAT
CCAGCAGGAGAACGCAGAGAGGGCGAAGAACCAGGACGCTCTTGCGGCAG
AGGCGGCGAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17634:1556..2818+

>mRNA_Ecto-sp13_S_contig17634.5333.1 ID=mRNA_Ecto-sp13_S_contig17634.5333.1|Name=mRNA_Ecto-sp13_S_contig17634.5333.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17634:1556..2818+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGCGTCGTGTGTGTTTTCTGTTTGCTGGATTGTCCATGTTTCGTCGC
AAGCCGAACAAGCCGGAGGCGAAGAAGAAGGGCCCGAGTCCTATTTGCGG
CTGCTTCAATGTCAAGCTGGACAGAAGTGATGATCTTGATGGCGTGGAGT
ATCTGTACTGCCACCCTGACCCATAAGAGGGCCTGGGAGGTGGATGTCGA
GGCCGACGACAAAGATGAGGGGGATGACACTACCCCAAGCGAGGCGTTTT
TGTCGTTACAGAGGGAGCTGGAGGAGAAGGAGAAGATCCAGCAGGAGAAC
GCAGAGAGGGCGAAGAACCAGGACGCTCTTGCGGCAGAGGCGGCGAAC
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