mRNA_Ecto-sp13_S_contig176.5312.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig176.5312.1
Unique NamemRNA_Ecto-sp13_S_contig176.5312.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig176.5312.1 vs. uniprot
Match: D8LDB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB3_ECTSI)

HSP 1 Score: 630 bits (1624), Expect = 7.300e-227
Identity = 318/338 (94.08%), Postives = 322/338 (95.27%), Query Frame = 1 
Query:    1 MINPFIRAVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTADTTRENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGEAIVCVYDSDDLFDNACSEGLGILPEAEAPSATPGDGISNVDVPRVEQNGSSLSFSVAWGDGGGAGGFEDTAPFIDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFTATEETAAKAEATNRGGDGGEGGTVLALVLAGGLVFGLVAWLAITSSRRRQRRRWLGTATEAEALPEDTFIRLSDPYSGVH 1014
            M NPFIR VAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTA+TT ENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGE IVCVY SDDLFDNACSEGLGILPEAEAPSAT GDGISNVDVPRVEQNGS LSFSV WGDGGGAGGFEDTAPF+DIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSF A EETAA  +ATN GGDGGEGGTVLALVLAGGLV GLVAWLAITSSRRRQRRRWLGTA EAEALPEDTF+RLSDPYSG H
Sbjct:   19 MTNPFIRGVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTANTTSENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWAIRSSWDGTISGEGIVCVYHSDDLFDNACSEGLGILPEAEAPSATQGDGISNVDVPRVEQNGSYLSFSVTWGDGGGAGGFEDTAPFVDIWLVAEQSDPPAWVELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAAMEETAADVDATNGGGDGGEGGTVLALVLAGGLVLGLVAWLAITSSRRRQRRRWLGTANEAEALPEDTFVRLSDPYSGFH 356
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BLAST of mRNA_Ecto-sp13_S_contig176.5312.1 vs. uniprot
Match: A0A6H5KP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP04_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.160e-73
Identity = 114/126 (90.48%), Postives = 116/126 (92.06%), Query Frame = 1 
Query:  637 MLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFTATEETAAKAEATNRGGDGGEGGTVLALVLAGGLVFGLVAWLAITSSRRRQRRRWLGTATEAEALPEDTFIRLSDPYSGVH 1014
            MLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSF ATEETAA  +ATN GGDGGEGGTVLALVL GGL  GLVAWLAITSSRR+QRRRWLGTA EAEALPEDTFIRLS PYSG H
Sbjct:    1 MLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYACSDFVSFAATEETAADGDATNSGGDGGEGGTVLALVLVGGLFSGLVAWLAITSSRRKQRRRWLGTANEAEALPEDTFIRLSGPYSGFH 126
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig176.5312.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDB3_ECTSI7.300e-22794.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KP04_9PHAE1.160e-7390.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig176contigEcto-sp13_S_contig176:1732..5084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1045
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001870.1
Cds size1017
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig176.5312.1prot_Ecto-sp13_S_contig176.5312.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig176 1760..5084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.8092358-UTR-Ecto-sp13_S_contig176:1731..17591681462914.8092358-UTR-Ecto-sp13_S_contig176:1731..1759Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig176 1732..1759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462914.822684-CDS-Ecto-sp13_S_contig176:1759..19771681462914.822684-CDS-Ecto-sp13_S_contig176:1759..1977Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig176 1760..1977 -
1681462914.8390987-CDS-Ecto-sp13_S_contig176:2313..24911681462914.8390987-CDS-Ecto-sp13_S_contig176:2313..2491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig176 2314..2491 -
1681462914.85042-CDS-Ecto-sp13_S_contig176:2733..29641681462914.85042-CDS-Ecto-sp13_S_contig176:2733..2964Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig176 2734..2964 -
1681462914.8602984-CDS-Ecto-sp13_S_contig176:3956..40971681462914.8602984-CDS-Ecto-sp13_S_contig176:3956..4097Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig176 3957..4097 -
1681462914.8771818-CDS-Ecto-sp13_S_contig176:4835..50841681462914.8771818-CDS-Ecto-sp13_S_contig176:4835..5084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig176 4836..5084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig176.5312.1

>prot_Ecto-sp13_S_contig176.5312.1 ID=prot_Ecto-sp13_S_contig176.5312.1|Name=mRNA_Ecto-sp13_S_contig176.5312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp
MINPFIRAVAVVALAKAASADASFSNVKISQFQQAGLDLSFLVSWDTADT
TRENPSSGSGLIDIWLETRQTEASSMVETVLQQGVENTGSMWMDAGDSWA
IRSSWDGTISGEAIVCVYDSDDLFDNACSEGLGILPEAEAPSATPGDGIS
NVDVPRVEQNGSSLSFSVAWGDGGGAGGFEDTAPFIDIWLVAEQSDPPAW
VELVVEQNVENDMLSHQEVSMDWSMMGWDLTRDGQLQSCVYDTQDYDNYA
CSDFVSFTATEETAAKAEATNRGGDGGEGGTVLALVLAGGLVFGLVAWLA
ITSSRRRQRRRWLGTATEAEALPEDTFIRLSDPYSGVH*
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mRNA from alignment at Ecto-sp13_S_contig176:1732..5084-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig176.5312.1 ID=mRNA_Ecto-sp13_S_contig176.5312.1|Name=mRNA_Ecto-sp13_S_contig176.5312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig176:1732..5084- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAAACCCTTTCATCCGAGCCGTAGCGGTGGTGGCTCTTGCCAAGGC
AGCATCTGCGGATGCGAGCTTCTCAAACGTCAAGATCTCCCAATTTCAGC
AAGCGGGCCTAGATCTGTCCTTCCTGGTATCTTGGGACACCGCCGATACC
ACCCGTGAGAATCCGTCTTCTGGATCGGGGTTGATCGATATTTGGCTCGA
GACCAGACAGACGGAGGCCTCTTCCATGGTCGAGACCGTCCTCCAGCAGG
TAGTTGTTAATTGCTACGGCAGGACAACGTGAGATTCAGGGACGGCTTTG
AAAGAAGTTGCACTGCAATGGCTGGGATTGTCACGGCTCATTATTTAGAT
GGTTATGGTCAGAGGACGAGGGCCAGGAAACAGCACGCTCTCTTTCTGCG
ACGTCTAACGTACGAAGTACCAGTCAGTGTACGCATACGAAACAATTGCA
GTCTCCATGTATTCTGGGTGCCACGTCGTCAAACAAATCATGTCCGTTCA
CCCTTTACACACCACAGTACTTGTTGAAGAACGCCCAGCCAATTTCTCCC
TGGGTTCGCTGGACATGATGTATGATTGGGTCGTTGGGGAGGATCATGTA
TGTACAAGGTTGCGCCACACACCGTACGATAGGTTGCAGTTCCTCCGAAA
AAAAAGTGCGACTTGTTGAGCGAACCCGGTTGGTCGAACACCCTTCCTTA
TTAGCCCTCCTGGTTGTACAAGTTATATCGGCTTGAGTCTAGCTGGGCCG
AGCGCCCGCATTTCAAGAATGACGGGGGAAGCGCACTGCGGAAGCAGACT
TGCCACCGCCACCAAGTGCGACTCACGAACACGTGTGTGCCGGTCAGCGC
CATCAATGGCACCCAAAATCTCAGCTTTTCCACGGCTTCCACAACGGTGA
ATATTCATCTGCTCTGGTCCTCTCCCCGGAGACAATAATTCAACTTCCAA
GACTCCTCATAAACTTATTTCGTTTCTGAACCCACAGGGTGTCGAAAACA
CCGGTTCGATGTGGATGGACGCGGGTGATTCTTGGGCGATTCGTTCATCT
TGGGACGGCACCATCAGTGGGGAGGCAATCGTTTGTGTGTACGACTCCGA
CGACCTCTTCGACAACGCCTGCAGCGAGGTGCGGGCGGAGAACCTAGCAC
GGAAAACAACCACATCAAGACAGACACGCTAACAACAAATCCGTCAATGC
AAGGGCGCCCGTCAAAGGTCATCCCACACAACATCATACACTGTAGATAC
TCCGGGACTGCGATTCACCGAATACCTCACGGCGCTTCGCACTTTGTGAT
GTGCTAGACTGGTCCGGTGAAAACCCGGCGTACTCCGTCCCGGCTTTGTA
CGGATGCGACGTGAATGGTCTACTGACTACGGCATGCACGGCCTAAGCAC
ACCCCACCCACCCCATCCCCGGAACGGCCTGAAACAAGTTGTTGCTTTTG
TCCTTTTCTTGAGGATTACCCACTTCACGCAAACAGGTTGCTGTGGACGC
ATGGTTTGCTACTAGTGACGACGTTTCACGCATATATTGAGGGGGACAGG
TGCTCTCTTGGTGCGCTATGAATATGTCTTTCGTGTGATCATGTAATGGT
GGTTCACAAGAGAGGACCCTAGCCTAACCCTAGGGTACCCCGACAAAAAT
ATGAGTCCCTTCCGCGGGTCCCCTATGCCATTAAAGGAATTAGATTACTC
GGCCCCCTCGATTCCTCCAAAATGTGAAACGGGTAACTAGGTGTGGGAGG
ATTGTTTTTGCGTACCCTCGACCGGTGCAATAAATAGCCTTCATCAAGCA
AGCAAGGTCTATTTGCCTATTCATCCTCGGGCGCGGTTTCATCCTCGGGC
GCGAACCCTCGCCGGCAGCATCATGACACCGTGACTACAGCTACGAATTG
AAAACTTTTCCGGCTACACAGAACCTCGATCCCTCGACTCCCGTCGACGA
AGCAAACAACAACAGTTTTGAGAAAGCATACATGAGGCACAGTTTTCTGC
CGGGAAAGCACTCAAGTTCGCTCCGTCTTGACCGTGGGCAATGTCTGCGT
TCCACCGATACCGAATTCCTCATACCTCTAACGCTTTAACTTCTTCTTTC
CTTCCTCACCATGCCCAAAGGGGCTTGGCATCCTTCCCGAGGCAGAAGCT
CCGTCCGCAACCCCAGGGGACGGCATCAGCAACGTCGACGTCCCGCGTGT
CGAACAGAATGGGTCATCTCTGTCGTTTTCGGTTGCGTGGGGGGACGGCG
GGGGTGCTGGAGGGTTCGAAGACACTGCCCCTTTCATCGACATCTGGCTT
GTCGCTGAGCAGTCCGACCCTCCGGCGTGGGTTGAGCTCGTGGTCGAGCA
GGTGAGTGGGAATCGTGACGTGTTCTGCCGGGTAGGCATGGTTGGACGCT
GTGTGGTTCGATCCAGCATGCAGAGACTGAATGTGCCCCCGTATGTCCTG
GTGCTACAACTTCAACCGCCTTTGCCACGGTCCATTACACCCAGAAAAAA
AGAGATTGAAAAATTGCTGAGGCCGTGCAGAGTTGTGAGCACGGACGCAC
TCACACACACGACGACCGCCTCCCCCTCGCTGACATCACGCAGAATGTAG
AAAACGACATGCTGTCGCACCAGGAGGTCAGCATGGATTGGTCGATGATG
GGCTGGGACCTGACTCGCGATGGGCAGCTCCAGTCCTGCGTGTACGATAC
CCAAGACTACGACAATTACGCGTGCAGCGACTTCGTGTCCTTCACGGCAA
CGGAGGAAACCGCAGCCAAAGGTATGATTATTGATGTAACGTTGCAGTCC
GGTGGTTTCATGAGTTTTTCCCCGAACGAGTGAAGCGCCTCCTTCGTTTC
TTTTCCAAAGCAGGCTCTCTCGTTGATTGAAACTTCGAGGGATCGAGGGA
GGCGTTCACGTTCTCTTTCCTTCCATTTGTGGGTAGAGATAAGCCCCCTA
ACCCTGTGTTTTTTCTCAGCAGGCTTTCTCGTTGAGTAACACTTTGTTTG
AGACATGGTAGGAGACTTTCACGTCTTTCCTTCCGTCCATTGCTCGGAAC
CCCCCTCATCACATTCCTGCACTTCCAAACCGCCCTCCTCCTCGTTGTAT
CCGGCAGCCGAAGCCACCAACAGAGGCGGCGACGGAGGAGAAGGCGGCAC
GGTTCTTGCTTTGGTTCTAGCGGGGGGTCTTGTTTTCGGCCTGGTGGCCT
GGCTGGCCATCACCTCGTCCCGCCGTAGGCAAAGGAGGAGGTGGCTGGGC
ACCGCGACTGAGGCGGAAGCCCTCCCCGAGGACACCTTCATCCGCCTTTC
GGACCCCTACTCCGGCGTCCATTGATGACGAAGGCGACGAAGAATTATTG
CCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig176:1732..5084-

>mRNA_Ecto-sp13_S_contig176.5312.1 ID=mRNA_Ecto-sp13_S_contig176.5312.1|Name=mRNA_Ecto-sp13_S_contig176.5312.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig176:1732..5084- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAAACCCTTTCATCCGAGCCGTAGCGGTGGTGGCTCTTGCCAAGGC
AGCATCTGCGGATGCGAGCTTCTCAAACGTCAAGATCTCCCAATTTCAGC
AAGCGGGCCTAGATCTGTCCTTCCTGGTATCTTGGGACACCGCCGATACC
ACCCGTGAGAATCCGTCTTCTGGATCGGGGTTGATCGATATTTGGCTCGA
GACCAGACAGACGGAGGCCTCTTCCATGGTCGAGACCGTCCTCCAGCAGG
GTGTCGAAAACACCGGTTCGATGTGGATGGACGCGGGTGATTCTTGGGCG
ATTCGTTCATCTTGGGACGGCACCATCAGTGGGGAGGCAATCGTTTGTGT
GTACGACTCCGACGACCTCTTCGACAACGCCTGCAGCGAGGGGCTTGGCA
TCCTTCCCGAGGCAGAAGCTCCGTCCGCAACCCCAGGGGACGGCATCAGC
AACGTCGACGTCCCGCGTGTCGAACAGAATGGGTCATCTCTGTCGTTTTC
GGTTGCGTGGGGGGACGGCGGGGGTGCTGGAGGGTTCGAAGACACTGCCC
CTTTCATCGACATCTGGCTTGTCGCTGAGCAGTCCGACCCTCCGGCGTGG
GTTGAGCTCGTGGTCGAGCAGAATGTAGAAAACGACATGCTGTCGCACCA
GGAGGTCAGCATGGATTGGTCGATGATGGGCTGGGACCTGACTCGCGATG
GGCAGCTCCAGTCCTGCGTGTACGATACCCAAGACTACGACAATTACGCG
TGCAGCGACTTCGTGTCCTTCACGGCAACGGAGGAAACCGCAGCCAAAGC
CGAAGCCACCAACAGAGGCGGCGACGGAGGAGAAGGCGGCACGGTTCTTG
CTTTGGTTCTAGCGGGGGGTCTTGTTTTCGGCCTGGTGGCCTGGCTGGCC
ATCACCTCGTCCCGCCGTAGGCAAAGGAGGAGGTGGCTGGGCACCGCGAC
TGAGGCGGAAGCCCTCCCCGAGGACACCTTCATCCGCCTTTCGGACCCCT
ACTCCGGCGTCCATTGA
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