mRNA_Ecto-sp13_S_contig17537.5279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17537.5279.1
Unique NamemRNA_Ecto-sp13_S_contig17537.5279.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17537.5279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17537contigEcto-sp13_S_contig17537:2302..3666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size586
Hectar predicted targeting categoryother localisation
Exons2
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.68012-UTR-Ecto-sp13_S_contig17537:2301..23631681462912.68012-UTR-Ecto-sp13_S_contig17537:2301..2363Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17537 2302..2363 +
1681462912.6959414-UTR-Ecto-sp13_S_contig17537:3143..31531681462912.6959414-UTR-Ecto-sp13_S_contig17537:3143..3153Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17537 3144..3153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.710453-CDS-Ecto-sp13_S_contig17537:3153..36661681462912.710453-CDS-Ecto-sp13_S_contig17537:3153..3666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17537 3154..3666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17537.5279.1prot_Ecto-sp13_S_contig17537.5279.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17537 3154..3666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17537.5279.1

>prot_Ecto-sp13_S_contig17537.5279.1 ID=prot_Ecto-sp13_S_contig17537.5279.1|Name=mRNA_Ecto-sp13_S_contig17537.5279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MDTHRSKKRKRTNTPAGTSRAYPPPATLRAKKDGSQRSCVACGVSVRGGI
AGWAAGSARCVECGEEYHLGCVDRSVTYVRRAGWVCGVCNSNDHNRSRGE
RSAAAEAAAQLSASQQQRQQQQQQEGVDTPPSRVVHVLSSALTRLSSLPD
GGGGSGGGGKVTAGPRAPDGM
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mRNA from alignment at Ecto-sp13_S_contig17537:2302..3666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17537.5279.1 ID=mRNA_Ecto-sp13_S_contig17537.5279.1|Name=mRNA_Ecto-sp13_S_contig17537.5279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1365bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17537:2302..3666+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGCAGGTGCCGAATGTTGCGGTTGTTTCCCGGAAAATCCTGGAGATTT
CGTGGCCTGAAGGTAGGTTATTGGGGTGTTGCGTAAAGAACAAGGAGAAG
GTCATTGTTTAACGCAATAAGAAGTACCATGCGGTACGAGTCGTCGATAC
CCACTGACTTGACCGGGTTTCAAGACGCGATTGCTCCACACCATAGATGG
CGCGCAAGCCGACCAATACGTGCACGGACAAGCTCTCGACTAGATCTCTC
CAGGGCTACCCTTTTCGGCACTGGCAGCCTGTTGGTCTTGAGTATTCGAT
CTATGAAAGCCACTCAGGCCGGGGTGTGCAGCGAAATAGAGCCAGCAGGA
CGGCCGTTGACGGTTGCCAGCACAGGGTCCAGTGCGCTCACGTTGGTCAA
GACCTTGCAAGTTCTTGTGGTCGAAGTCATTCTCGATGTGTGAGATGAAG
ATTCCGCAGCAGCCTGATAAGAGAGTTGGCACGGGTCTCGAGGGGTGGCA
CAACCGTTGTAGTTGTTGTTGTGCTTTCAACGAGCAGTTCTTCGGCTTGT
AGTGGTGTATTACTTCGTGGACCTGCCCACGCATGTAGTCACGTACTGTA
GTACAGCAGTAGCAAAGTGGTGGGTTCGAACGTAATGTTTGAATTCCTTT
TGGTAGCCCGGGAATGAACGAATGAACCAATCTGCGAATCTCCAGTAACA
CCAGTTATTTGCTGAACTGCGAGCTGTTGATGGGAATGACCTTACAGATA
ATAGGCCTCACCCCCACAACCCTCCCACCGGTGCCCTCTTCGCTCGCTGT
GTGTTTGACGCTGTATCGACCACCAACCGCATACGGCAGCAGGTTAACGC
CCATGGACACTCACCGCAGCAAGAAGCGCAAGCGCACCAACACGCCGGCA
GGCACAAGCCGGGCATATCCCCCGCCGGCTACCCTCAGAGCGAAGAAAGA
CGGCAGTCAGCGCTCTTGCGTGGCTTGCGGCGTCAGCGTGCGTGGCGGGA
TCGCGGGATGGGCGGCGGGAAGCGCCAGGTGCGTAGAGTGTGGCGAAGAG
TACCACCTGGGCTGCGTGGACCGTTCGGTGACGTACGTGCGAAGAGCGGG
CTGGGTGTGCGGCGTGTGCAACAGCAACGACCACAATCGGTCGCGAGGTG
AAAGGTCAGCAGCAGCAGAAGCCGCGGCCCAGCTCTCAGCATCTCAGCAG
CAACGACAGCAGCAGCAGCAGCAAGAAGGGGTTGATACCCCACCCTCGCG
GGTCGTGCACGTATTGTCCTCGGCGCTCACACGTTTGTCCAGCTTACCCG
ATGGCGGCGGCGGCAGCGGCGGCGGCGGAAAAGTGACAGCGGGACCACGG
GCACCGGACGGGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17537:2302..3666+

>mRNA_Ecto-sp13_S_contig17537.5279.1 ID=mRNA_Ecto-sp13_S_contig17537.5279.1|Name=mRNA_Ecto-sp13_S_contig17537.5279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17537:2302..3666+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACTCACCGCAGCAAGAAGCGCAAGCGCACCAACACGCCGGCAGG
CACAAGCCGGGCATATCCCCCGCCGGCTACCCTCAGAGCGAAGAAAGACG
GCAGTCAGCGCTCTTGCGTGGCTTGCGGCGTCAGCGTGCGTGGCGGGATC
GCGGGATGGGCGGCGGGAAGCGCCAGGTGCGTAGAGTGTGGCGAAGAGTA
CCACCTGGGCTGCGTGGACCGTTCGGTGACGTACGTGCGAAGAGCGGGCT
GGGTGTGCGGCGTGTGCAACAGCAACGACCACAATCGGTCGCGAGGTGAA
AGGTCAGCAGCAGCAGAAGCCGCGGCCCAGCTCTCAGCATCTCAGCAGCA
ACGACAGCAGCAGCAGCAGCAAGAAGGGGTTGATACCCCACCCTCGCGGG
TCGTGCACGTATTGTCCTCGGCGCTCACACGTTTGTCCAGCTTACCCGAT
GGCGGCGGCGGCAGCGGCGGCGGCGGAAAAGTGACAGCGGGACCACGGGC
ACCGGACGGGATG
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