prot_Ecto-sp13_S_contig17536.5278.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig17536.5278.1
Unique Nameprot_Ecto-sp13_S_contig17536.5278.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length104
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Match: D8LL47_ECTSI (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL47_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 4.860e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 0 
Query:   50 QELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR 103
            QELLDPAEVRRAS+IEILDE+EEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR
Sbjct:  274 QELLDPAEVRRASKIEILDEIEEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR 327
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BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Match: A0A6H5JEL0_9PHAE (Leucine carboxyl methyltransferase 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL0_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.170e-24
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 0 
Query:   50 QELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGEDTVARLSGNPVLSR 103
            QELLDPAEVRRAS+IEILDEVEEWELIMHHYCLVVAAKGE TVARLSGNPVLSR
Sbjct:  209 QELLDPAEVRRASKIEILDEVEEWELIMHHYCLVVAAKGEHTVARLSGNPVLSR 262
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BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Match: A0A835YKC0_9STRA (Leucine carboxyl methyltransferase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKC0_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.790e-6
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 0 
Query:   50 QELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGE 89
            + +LD A+V RA+ IE LDEVEEW LIM HYCL +AA+GE
Sbjct:  278 ERVLDAAQVARAARIEPLDEVEEWTLIMSHYCLALAARGE 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17536.5278.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL47_ECTSI4.860e-2596.30Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
A0A6H5JEL0_9PHAE1.170e-2496.30Leucine carboxyl methyltransferase 1 n=1 Tax=Ectoc... [more]
A0A835YKC0_9STRA1.790e-665.00Leucine carboxyl methyltransferase 1 n=1 Tax=Tribo... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150coord: 23..95
e-value: 3.6E-12
score: 47.9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17536contigEcto-sp13_S_contig17536:402..1326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17536.5278.1mRNA_Ecto-sp13_S_contig17536.5278.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig17536 2..2618 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig17536.5278.1 ID=prot_Ecto-sp13_S_contig17536.5278.1|Name=mRNA_Ecto-sp13_S_contig17536.5278.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MATKRLAGNKSISYDASPYVVPARKHASGGVQWVTLQSVIMFVCDVDSQQ
ELLDPAEVRRASEIEILDEVEEWELIMHHYCLVVAAKGEDTVARLSGNPV
LSR*
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