mRNA_Ecto-sp13_S_contig17527.5273.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: D7G4K9_ECTSI (Cyclin D2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K9_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 1.780e-132 Identity = 220/275 (80.00%), Postives = 224/275 (81.45%), Query Frame = 1
Query: 1 RFALASTAARAIVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLSFGGPTTAGARGGDDAGHGVSSTRAAGGAVAASVAGLPSDTHNDNNN-SNRDLLGQGSGSRTVRPWSVDEGSPRGGPVAGGGPAKAARYRRSDKHLALRALHHLECCGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQVHSTFN 822
RFALASTAARA+VSSHAAVMICEGYSEIRLGAREPSLSSSSRRLL FG SN DLLGQGSG RTVRPWSVDEGSPRGGP GGGPAKAARYRR+D+HLALRALHHLECCGDLLIRQLKTLPRLDIFQ LQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNP+QVHSTFN
Sbjct: 128 RFALASTAARAVVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLPFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISNSDLLGQGSGGRTVRPWSVDEGSPRGGPGQGGGPAKAARYRRNDQHLALRALHHLECCGDLLIRQLKTLPRLDIFQSLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPSQVHSTFN 402
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A6H5JEY8_9PHAE (Cyclin N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY8_9PHAE) HSP 1 Score: 374 bits (960), Expect = 1.380e-121 Identity = 208/274 (75.91%), Postives = 215/274 (78.47%), Query Frame = 1
Query: 1 RFALASTAARAIVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLSFGGPTTAGARGGDDAGHGVSSTRAAGGAVAASVAGLPSDTHNDNNNSNRDLLGQGSGSRTVRPWSVDEGSPRGGPVAGGGPAKAARYRRSDKHLALRALHHLECCGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQVHSTFN 822
RFALASTAARAIVSSHAAV+I EGYSEIR+GAREPSLSSSS RLL FGGP A DLL QG G RTVRPW VDEGSPRGGPV GGGPAKAAR RR+D+HL LRALHHLECCGDLLIRQLKTLPRLD+FQ +QS AVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGG QVMNT EAIHICDSQY P+QVHSTFN
Sbjct: 259 RFALASTAARAIVSSHAAVIIREGYSEIRIGAREPSLSSSSARLLPFGGPAAAXXXXXXXXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXDLLAQGGGGRTVRPWLVDEGSPRGGPVQGGGPAKAARCRRNDQHLVLRALHHLECCGDLLIRQLKTLPRLDMFQSVQSGAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGGQVMNTPEAIHICDSQYTPSQVHSTFN 527
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A2V0PPT4_9CHLO (Cyclin-A2-like n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PPT4_9CHLO) HSP 1 Score: 62.4 bits (150), Expect = 1.730e-7 Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 1
Query: 547 LTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 807
+T HMRA+LVDW VEVA ++RL + LH TI+ LD L+KV + R +LQL G+ C M E I D+ Y+P Q+
Sbjct: 130 MTPHMRAILVDWLVEVALEYRLCSDTLHLTIALLDRFLSKVPISRDQLQLAGIAC-MWAASKYEEIYAPTAREFCFITDNTYSPEQL 215
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A6A1W9N1_9ROSI (B-like cyclin n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1W9N1_9ROSI) HSP 1 Score: 58.9 bits (141), Expect = 3.060e-6 Identity = 45/135 (33.33%), Postives = 63/135 (46.67%), Query Frame = 1
Query: 427 RALHHLECCG--------DLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 807
R L +CCG +L + + P D + +Q + A MRAVL+DW VEVA ++RL L ++ +D L+ +V R RLQLLGV C MI + C N E +I D Y +V
Sbjct: 234 RNLMDPQCCGTIAYDIYKNLRVSEANKSPSTDFMEMIQKE--------INASMRAVLIDWLVEVAEEYRLLPDTLFLAVNYIDRYLSGNSVKRQRLQLLGVACMMIAAKYEEIC-APNVDEFCYITDHTYEKQEV 359
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A0D2NRM8_9CHLO (Cyclin-A1-1 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2NRM8_9CHLO) HSP 1 Score: 58.2 bits (139), Expect = 3.730e-6 Identity = 48/145 (33.10%), Postives = 66/145 (45.52%), Query Frame = 1
Query: 373 GGPAKAARYRRSDKHLALRALHHLECCGDLLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 807
G P A Y R LH +EC + PR +R+Q Q +T HMRA+LVDW VEVA ++RL + LH T++ LD L+ + R +LQL G+ C M + E I D+ Y P Q+
Sbjct: 37 GNPLACAEYARD----IFDHLHEIEC-------DCRADPR--YMERVQ--------QDMTPHMRAILVDWLVEVAMEYRLCSDTLHLTVALLDRFLSVARIGRDQLQLAGIAC-MWAAAKYEEIYAPSAREFCFITDNTYTPKQL 159
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A8C4ACX5_9TELE (Cyclin-F n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4ACX5_9TELE) HSP 1 Score: 58.2 bits (139), Expect = 6.230e-6 Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 559 MRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQY 792
MR +LVDW VEVA S++ LH T++ +D L + AVP+ RLQLLG+ C ++ T+ ++ EA+ + D+ Y
Sbjct: 307 MRYILVDWLVEVATMKDFSSLTLHVTVACVDRYLAQRAVPKARLQLLGIACMVVCTRYMSK-DILTIREAVWLTDNTY 383
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: UPI0002C2EBEE (cyclin-A1-4-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C2EBEE) HSP 1 Score: 57.8 bits (138), Expect = 7.240e-6 Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 1
Query: 460 LLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQY 792
LL ++ P +D +R+Q+ + A MRAVL+DW +EVA +FRL L T++ +D L+ A+ R RLQLLGV C MI + V E +I D+ Y
Sbjct: 245 LLESEVNRRPAMDFIERVQND--------IDARMRAVLIDWLIEVAEEFRLVPDTLFLTVNYVDRYLSGNAIKRQRLQLLGVACMMIAAKYEE-IHVPEVEEFCYITDNTY 346
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: UPI000C875A44 (cyclin-A1-4-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI000C875A44) HSP 1 Score: 57.4 bits (137), Expect = 9.300e-6 Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 460 LLIRQLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 807
L I + K P +D +++Q + A MRA+L+DW VEVA ++RL L+ T++ +D L+ V R RLQLLGV C +I ++ C E +I D+ Y +V
Sbjct: 206 LRIAETKKRPSMDFIEKIQKD--------INASMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSTNEVNRQRLQLLGVACMLIASKYEEIC-APQVEEFCYITDNTYFKEEV 312
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A068URS1_COFCA (Cyclin N-terminal domain-containing protein n=5 Tax=Coffea TaxID=13442 RepID=A0A068URS1_COFCA) HSP 1 Score: 57.4 bits (137), Expect = 9.690e-6 Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 472 QLKTLPRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQY 792
++K P +D +R+Q + A MRA+L+DW VEVA ++RL L+ TI+ +D L+ + R RLQLLGV C MI ++ C E +I D+ Y
Sbjct: 246 EVKKRPAIDFMERVQKD--------INASMRAILIDWLVEVAEEYRLVPETLYLTINYIDRYLSGNVMDRQRLQLLGVACMMIASKYEEIC-APQVEEFCYITDNTY 343
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Match: A0A371FP54_MUCPR (B-like cyclin (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371FP54_MUCPR) HSP 1 Score: 57.4 bits (137), Expect = 1.210e-5 Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 487 PRLDIFQRLQSRAVLGPTQFLTAHMRAVLVDWCVEVACQFRLSTIALHATISSLDVCLTKVAVPRCRLQLLGVVCAMIQTQAGGGCQVMNTSEAIHICDSQYNPAQV 807
P LD +++Q+ L A MRA+L+DW VEVA ++RL L T++ +D L+ A+ R +LQLLGV C MI + C E ++ D+ Y+ QV
Sbjct: 302 PSLDFMEKIQND--------LNASMRAILMDWLVEVAEEYRLLPDTLFLTVNCIDRYLSGNAMNRQQLQLLGVACMMIAAKYEEIC-APKVEEFCYVTDNTYSKEQV 399 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17527.5273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig17527.5273.1 >prot_Ecto-sp13_S_contig17527.5273.1 ID=prot_Ecto-sp13_S_contig17527.5273.1|Name=mRNA_Ecto-sp13_S_contig17527.5273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp RFALASTAARAIVSSHAAVMICEGYSEIRLGAREPSLSSSSRRLLSFGGPback to top mRNA from alignment at Ecto-sp13_S_contig17527:1..3667- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig17527.5273.1 ID=mRNA_Ecto-sp13_S_contig17527.5273.1|Name=mRNA_Ecto-sp13_S_contig17527.5273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17527:1..3667- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17527:1..3667- >mRNA_Ecto-sp13_S_contig17527.5273.1 ID=mRNA_Ecto-sp13_S_contig17527.5273.1|Name=mRNA_Ecto-sp13_S_contig17527.5273.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17527:1..3667- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |