mRNA_Ecto-sp13_S_contig17518.5269.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17518.5269.1
Unique NamemRNA_Ecto-sp13_S_contig17518.5269.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: D7FV81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV81_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 3.840e-63
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATA 297
            RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATA
Sbjct:  234 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATA 332
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A7S1YNE2_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YNE2_9STRA)

HSP 1 Score: 119 bits (298), Expect = 2.370e-32
Identity = 60/101 (59.41%), Postives = 78/101 (77.23%), Query Frame = 1 
Query:    4 DRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK---ATVLLQTSATA 297
            D +VQNMV TTDVGFPIRLEGLV ++   F +YEPELFPGLIYR+  P++ FLIFVSGKVV+TGAK+   L++ F K+YP L +++K   A++   T+ATA
Sbjct:   34 DFKVQNMVGTTDVGFPIRLEGLVYAHS-TFASYEPELFPGLIYRLVSPRVVFLIFVSGKVVITGAKTENDLKEAFAKLYPVLFEYRKVHVASLPASTNATA 133
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A059LCR3_9CHLO (Transcription factor TFIID n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LCR3_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 3.990e-31
Identity = 57/92 (61.96%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVL 276
            ++ ++QNMV + DV FPIRLEGL AS    FC+YEPELFPGLIYRM DPKI  LIFVSGKVVLTGAK   ++   F+ +YP L +FKK  +L
Sbjct:   29 KEFKIQNMVGSCDVRFPIRLEGL-ASTHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKRRDEIYRAFENIYPVLKEFKKGGIL 119
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A5J9V955_9POAL (Uncharacterized protein n=2 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V955_9POAL)

HSP 1 Score: 118 bits (295), Expect = 6.690e-31
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK 264
            +D ++QNMVA+ DV FPIRLEGL A N G F NYEPE+FPGLIYRM DPKI  L+FVSGKVVLTGAK  +Q+   F+ +YP L QF+K
Sbjct:  151 QDFKIQNMVASCDVKFPIRLEGL-ALNCGIFANYEPEIFPGLIYRMADPKIVLLVFVSGKVVLTGAKVREQIYTAFENIYPMLSQFRK 237
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A1D2AC59_AUXPR (Uncharacterized protein n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC59_AUXPR)

HSP 1 Score: 117 bits (293), Expect = 1.020e-30
Identity = 57/92 (61.96%), Postives = 71/92 (77.17%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVL 276
            ++ ++QNMV + DV FPIRLEGL AS+   FC+YEPELFPGLIYRM DPKI  LIFVSGKVVLTGAK  +++   F+ +YP L +FKK  +L
Sbjct:  112 KEFKIQNMVGSCDVRFPIRLEGL-ASSHSVFCSYEPELFPGLIYRMVDPKIVLLIFVSGKVVLTGAKRREEIYQAFENIYPVLKEFKKGGLL 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: UPI0019D41AE8 (TATA box-binding protein-like 2 isoform X2 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0019D41AE8)

HSP 1 Score: 114 bits (286), Expect = 1.800e-30
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    4 DRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKA 267
            D ++QNMV + DV FPIRLEGLV ++Q  FC+YEPELFPGLIYRM  P+I  LIFVSGKVVLTGAK   ++ D F+ +YP L  FKKA
Sbjct:   74 DFKIQNMVGSCDVRFPIRLEGLVLTHQQ-FCSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKDRSEIYDAFENIYPILKGFKKA 160
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A835ASQ1_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835ASQ1_9POAL)

HSP 1 Score: 114 bits (285), Expect = 2.860e-30
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK 264
            +D ++QNMV   DV FPIRLEGL  ++ G F NYEPE+FPGLIYRM DPKI  L+FVSGKVVLTGAK  +Q+   F+ +YP L QF+K
Sbjct:   74 KDFKIQNMVGACDVKFPIRLEGLALAS-GQFANYEPEIFPGLIYRMADPKIVILVFVSGKVVLTGAKVREQIYTAFENIYPMLVQFRK 160
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A507C8B1_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C8B1_9FUNG)

HSP 1 Score: 115 bits (288), Expect = 4.620e-30
Identity = 55/87 (63.22%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:    4 DRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKK 264
            D ++QN+V + DV FPIRLEGL AS+   F NYEPELFPGLIYRM DPK+  LIFVSGKVVLTGAK+ + + D F+K++P L  +KK
Sbjct:  136 DFKIQNIVGSCDVKFPIRLEGL-ASDHSAFANYEPELFPGLIYRMVDPKVVLLIFVSGKVVLTGAKTREHIYDAFEKIFPVLSMYKK 221
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BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A804J2E1_MUSAM (Uncharacterized protein n=2 Tax=Musa TaxID=4640 RepID=A0A804J2E1_MUSAM)

HSP 1 Score: 114 bits (285), Expect = 7.500e-30
Identity = 54/89 (60.67%), Postives = 68/89 (76.40%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKA 267
            +D ++QN+V + DV FPIRLEGL  S+ G FC+YEPELFPGLIYRMK PKI  LIFVSGK+V+TGAK   +    F+ +YP L +F+KA
Sbjct:  111 KDFKIQNIVGSCDVKFPIRLEGLAYSH-GAFCSYEPELFPGLIYRMKQPKIVLLIFVSGKIVITGAKVRDETYTAFENIYPVLTEFRKA 198
[Close]
BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Match: A0A061R1E7_9CHLO (Transcription initiation factor TFIID TATA-box-binding protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R1E7_9CHLO)

HSP 1 Score: 117 bits (292), Expect = 7.540e-30
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 RDRRVQNMVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFVSGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATV 273
            ++ ++QN+V + DV FPIRLEGL  S+Q  FCNYEPELFPGLIYRMK PKI  LIFVSGKVVLTGAK   ++   F+++YP L +F+KA V
Sbjct:  189 KEFKIQNIVGSCDVQFPIRLEGLSWSHQ-MFCNYEPELFPGLIYRMKQPKIVLLIFVSGKVVLTGAKHRNEIYQAFEQLYPVLREFRKADV 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17518.5269.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV81_ECTSI3.840e-63100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1YNE2_9STRA2.370e-3259.41Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A059LCR3_9CHLO3.990e-3161.96Transcription factor TFIID n=1 Tax=Helicosporidium... [more]
A0A5J9V955_9POAL6.690e-3165.91Uncharacterized protein n=2 Tax=Eragrostis curvula... [more]
A0A1D2AC59_AUXPR1.020e-3061.96Uncharacterized protein n=3 Tax=Auxenochlorella pr... [more]
UPI0019D41AE81.800e-3064.77TATA box-binding protein-like 2 isoform X2 n=1 Tax... [more]
A0A835ASQ1_9POAL2.860e-3062.50Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]
A0A507C8B1_9FUNG4.620e-3063.22Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A804J2E1_MUSAM7.500e-3060.67Uncharacterized protein n=2 Tax=Musa TaxID=4640 Re... [more]
A0A061R1E7_9CHLO7.540e-3062.64Transcription initiation factor TFIID TATA-box-bin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17518contigEcto-sp13_S_contig17518:2497..3170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score193.4
Seed ortholog evalue4.8e-47
Seed eggNOG ortholog2880.D7FV81
Model size297
KEGG koko:K03120
KEGG Pathwayko03022,ko05016,ko05165,ko05166,ko05168,ko05169,ko05203,map03022,map05016,map05165,map05166,map05168,map05169,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000126,GO:0000428,GO:0000976,GO:0000977,GO:0000979,GO:0000981,GO:0000983,GO:0000988,GO:0000989,GO:0000995,GO:0001012,GO:0001016,GO:0001046,GO:0001047,GO:0001067,GO:0001075,GO:0001085,GO:0001091,GO:0001092,GO:0001098,GO:0001099,GO:0001102,GO:0001134,GO:0001179,GO:0001186,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005672,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006359,GO:0006360,GO:0006366,GO:0006367,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0008301,GO:0009058,GO:0009059,GO:0009303,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022607,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032196,GO:0032774,GO:0032991,GO:0033613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042790,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0090576,GO:0097159,GO:0097659,GO:0097718,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:1990837,GO:2000112,GO:2001141
Exons2
EggNOG free text desc.DNA-templated transcription, initiation
EggNOG OGsCOG2101@1,KOG3302@2759
Cds size276
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.0043423-CDS-Ecto-sp13_S_contig17518:2496..26131681462912.0043423-CDS-Ecto-sp13_S_contig17518:2496..2613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17518 2497..2613 -
1681462912.0190406-CDS-Ecto-sp13_S_contig17518:2990..31491681462912.0190406-CDS-Ecto-sp13_S_contig17518:2990..3149Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17518 2991..3149 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462912.031471-UTR-Ecto-sp13_S_contig17518:3149..31701681462912.031471-UTR-Ecto-sp13_S_contig17518:3149..3170Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig17518 3150..3170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17518.5269.1prot_Ecto-sp13_S_contig17518.5269.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17518 2497..3149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17518.5269.1

>prot_Ecto-sp13_S_contig17518.5269.1 ID=prot_Ecto-sp13_S_contig17518.5269.1|Name=mRNA_Ecto-sp13_S_contig17518.5269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MVATTDVGFPIRLEGLVASNQGCFCNYEPELFPGLIYRMKDPKICFLIFV
SGKVVLTGAKSAQQLEDGFKKMYPTLCQFKKATVLLQTSATA
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mRNA from alignment at Ecto-sp13_S_contig17518:2497..3170-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17518.5269.1 ID=mRNA_Ecto-sp13_S_contig17518.5269.1|Name=mRNA_Ecto-sp13_S_contig17518.5269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=674bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17518:2497..3170- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGACCGGCGGGTCCAGAACATGGTGGCAACGACGGACGTTGGGTTTCC
TATTCGCCTGGAAGGCTTGGTGGCCTCGAACCAAGGATGCTTCTGCAACT
ACGAACCCGAGCTGTTTCCGGGGCTGATTTACCGTATGAAAGATCCCAAG
ATATGCTTCCTCATCTTCGTTTCGGGAAAGGTATTGTACACAAGCACGGA
GACGTCACCAAGTCGCAAACAACCTAGATTCAACCAAACTGACGGTGGCT
GTCGAGCTGACGTTTCCGGGAGCTTCGCTTCCTTTGGACCCGTTTCCTCT
TTCTGAGAGGGCTGAGCATTGGAGTTGACGCCGGGTTCGCATCACTATGA
ACAGTGCTCGAGGGTTAGGATTGTTTGGTTGGAAAGGGTGCTTGAGTCTG
CTATGTGTCCACCAACGCGCCTGGTGTGATACCTTTTACAGCAGCGCTCG
ATTCCTTTGGTGGTGATGGTGCTTGACCATTGTCCTCTCATCCAATGATG
AGAAGTGCCCCGGCCGTGTTGACTGCTGCAATGTGATTGATTCAAACGGA
ATTCCAGGTGGTGCTGACAGGGGCTAAGAGCGCCCAACAGCTCGAGGATG
GCTTCAAAAAGATGTACCCTACGCTGTGTCAATTCAAGAAAGCCACGGTC
CTCTTGCAGACCTCGGCTACCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17518:2497..3170-

>mRNA_Ecto-sp13_S_contig17518.5269.1 ID=mRNA_Ecto-sp13_S_contig17518.5269.1|Name=mRNA_Ecto-sp13_S_contig17518.5269.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17518:2497..3170- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGCAACGACGGACGTTGGGTTTCCTATTCGCCTGGAAGGCTTGGT
GGCCTCGAACCAAGGATGCTTCTGCAACTACGAACCCGAGCTGTTTCCGG
GGCTGATTTACCGTATGAAAGATCCCAAGATATGCTTCCTCATCTTCGTT
TCGGGAAAGGTGGTGCTGACAGGGGCTAAGAGCGCCCAACAGCTCGAGGA
TGGCTTCAAAAAGATGTACCCTACGCTGTGTCAATTCAAGAAAGCCACGG
TCCTCTTGCAGACCTCGGCTACCGCT
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