mRNA_Ecto-sp13_S_contig17507.5261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17507.5261.1
Unique NamemRNA_Ecto-sp13_S_contig17507.5261.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17507.5261.1 vs. uniprot
Match: D7FVC9_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVC9_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 7.000e-19
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:    1 LFEASTAVLRRDPACLLAALCRDGGPLRADLDGTINVDRDW 123
            LFEASTAVLRRDPACLLAALC DGGPLRADL GTINVDRDW
Sbjct:   84 LFEASTAVLRRDPACLLAALCHDGGPLRADLGGTINVDRDW 124
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17507.5261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVC9_ECTSI7.000e-1995.12BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17507contigEcto-sp13_S_contig17507:3054..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score85.1
Seed ortholog evalue8.4e-15
Seed eggNOG ortholog2880.D7FVC9
Model size126
KEGG rclassRC00460,RC00461
KEGG koko:K11835,ko:K17868,ko:K21922
KEGG ReactionR11166
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515
Exons1
EggNOG free text desc.protein homooligomerization
EggNOG OGsKOG2723@1,KOG2723@2759
EC3.1.1.97,3.4.19.12
Cds size126
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03012,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462911.543019-CDS-Ecto-sp13_S_contig17507:3053..31791681462911.543019-CDS-Ecto-sp13_S_contig17507:3053..3179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17507 3054..3179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17507.5261.1prot_Ecto-sp13_S_contig17507.5261.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17507 3054..3179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17507.5261.1

>prot_Ecto-sp13_S_contig17507.5261.1 ID=prot_Ecto-sp13_S_contig17507.5261.1|Name=mRNA_Ecto-sp13_S_contig17507.5261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=42bp
LFEASTAVLRRDPACLLAALCRDGGPLRADLDGTINVDRDW*
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mRNA from alignment at Ecto-sp13_S_contig17507:3054..3179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17507.5261.1 ID=mRNA_Ecto-sp13_S_contig17507.5261.1|Name=mRNA_Ecto-sp13_S_contig17507.5261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17507:3054..3179+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTCGAGGCGTCGACAGCTGTCCTTCGACGAGATCCTGCTTGTCTTCT
GGCCGCTCTTTGCCGCGACGGCGGACCGCTGAGAGCGGACCTTGACGGTA
CCATCAACGTTGATAGAGACTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17507:3054..3179+

>mRNA_Ecto-sp13_S_contig17507.5261.1 ID=mRNA_Ecto-sp13_S_contig17507.5261.1|Name=mRNA_Ecto-sp13_S_contig17507.5261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17507:3054..3179+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTCGAGGCGTCGACAGCTGTCCTTCGACGAGATCCTGCTTGTCTTCT
GGCCGCTCTTTGCCGCGACGGCGGACCGCTGAGAGCGGACCTTGACGGTA
CCATCAACGTTGATAGAGACTGGTGA
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