mRNA_Ecto-sp13_S_contig17485.5251.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig17485.5251.1
Unique NamemRNA_Ecto-sp13_S_contig17485.5251.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig17485.5251.1 vs. uniprot
Match: A0A6H5KWI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWI4_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 3.040e-40
Identity = 198/221 (89.59%), Postives = 202/221 (91.40%), Query Frame = 1 
Query:    1 QVVAVVVAGVIGSRYLLVQKGGERGRSGGRRXXXXXXXXXASPKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVTDLPARPPXXXXXXXXXXXXXXXAMKGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---YSIKPEKSKRKPILSLFKRDTGPQRSTTMQEALSDE 654
            +VVAVVVAGVIGSRYLLVQ+GG+        XXXXXXXXX +PKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAV DLPARPPXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   YSIKPEKSKRKPILSLFKRDTGPQRSTTMQEALSDE
Sbjct:  236 EVVAVVVAGVIGSRYLLVQRGGKXXXXXXXXXXXXXXXXXXAPKSPLAGIGQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVADLPARPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSIKPEKSKRKPILSLFKRDTGPQRSTTMQEALSDE 456
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig17485.5251.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWI4_9PHAE3.040e-4089.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig17485contigEcto-sp13_S_contig17485:74..3670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score147.1
Seed ortholog evalue9.4e-33
Seed eggNOG ortholog2880.D8LKD4
Model size654
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2CI7K@1,2S3QS@2759
Cds size654
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462910.8524778-CDS-Ecto-sp13_S_contig17485:73..1651681462910.8524778-CDS-Ecto-sp13_S_contig17485:73..165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17485 74..165 +
1681462910.865429-CDS-Ecto-sp13_S_contig17485:484..6511681462910.865429-CDS-Ecto-sp13_S_contig17485:484..651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17485 485..651 +
1681462910.8736875-CDS-Ecto-sp13_S_contig17485:1360..14431681462910.8736875-CDS-Ecto-sp13_S_contig17485:1360..1443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17485 1361..1443 +
1681462910.8831027-CDS-Ecto-sp13_S_contig17485:2198..23221681462910.8831027-CDS-Ecto-sp13_S_contig17485:2198..2322Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17485 2199..2322 +
1681462910.8971508-CDS-Ecto-sp13_S_contig17485:3482..36701681462910.8971508-CDS-Ecto-sp13_S_contig17485:3482..3670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig17485 3483..3670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig17485.5251.1prot_Ecto-sp13_S_contig17485.5251.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig17485 74..3670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig17485.5251.1

>prot_Ecto-sp13_S_contig17485.5251.1 ID=prot_Ecto-sp13_S_contig17485.5251.1|Name=mRNA_Ecto-sp13_S_contig17485.5251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
QVVAVVVAGVIGSRYLLVQKGGERGRSGGRRRGRGGGGGGASPKSPLAGI
GQPRVSPEVAAADLKKRADSLKSANFDVDLDLFGDAVTDLPARPPPPAPP
AAEPSPSPADAMKGVVAAASDSAAAAAEVESVTTAEAESAAGPPPIEAAP
AAPPAVAAEPAPATPEPAPAAVAEPTPSPSTSYSIKPEKSKRKPILSLFK
RDTGPQRSTTMQEALSDE
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mRNA from alignment at Ecto-sp13_S_contig17485:74..3670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig17485.5251.1 ID=mRNA_Ecto-sp13_S_contig17485.5251.1|Name=mRNA_Ecto-sp13_S_contig17485.5251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17485:74..3670+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTGGCTGTGGTGGTTGCCGGGGTGATCGGGTCTAGGTACCTGCT
GGTCCAGAAAGGCGGTGAACGTGGCCGGAGTGGAGGCCGGAGGTGAGACG
GGGAAAGGGGATGAGCGGGTAGATAAAGTTACCTCGCATCAAGGCCAGAT
TCGCGTCCAAGATCACGTCACGCTTGTATGTGTTACTGCTTGCTGCATGG
ATATTTACTTGTGAGAATCACCACCCCCCCCGCCTGCTGTTCATCTGATT
CCATCTTGCATGGTTGGTTCCAAACTTGAAGACAACAAAAAATCGGGGGC
CCAAAACTTGTCTCGCTTTTGTCGTTATACATTTCAAAAGAAAACTGCTG
CGTCTCATTTTTGAGAATTACCCTAAGGCCCACGCAATGTCTTTCGTAAA
ACACAAAATAGACGAGGGAGAGGAGGGGGAGGGGGCGGTGCTTCCCCTAA
GTCTCCGCTAGCGGGGATCGGACAGCCCCGGGTTTCGCCGGAGGTGGCGG
CGGCCGACCTGAAGAAGCGAGCGGATAGCCTGAAGAGCGCCAACTTTGAC
GTGGACCTCGACCTCTTCGGCGACGCCGGTGAGGCAGAGAAAAATGTTGC
CTCTTGTGTGTTTGATTATTATTATTATTATTAGCATAGACTGCGCTAGC
CGGATGACCAATGAAAATATGTCAGTCTTAGTGCGGTGGAACAGAAGAAA
CCGAACACTTGTGAAAGTCATACGCGTATGTGTCTGTTTGAATTGGCATC
GACCCCACTAGCAATGAACTGACGTAAGTCTCAGTGCGTCTCGAAATGGA
CGAAACCCCAACTTGTGAAGGACCCGTGTGTGTCACGTGTGTGTTGTTTT
CGTCCTACCTAGCGCTAGTCTAAACCATTTAGCGTATCCGTCGGGGTGGC
GTTTGTGTTCAGAGGGCACCCGACCCTTCCTTCTTGCATGCAAGAATCTT
ATGCACATCCCTATGTGTCTTAACACGTCCCATGCTTTCAGTAGTTTCTT
TCTTTTTTATGTACAATGTCGTATTTTTTTTAGGAGGGAGGCTCGCGGTT
CCCCGTGTTCTGTCTGTTCCTATTCCCTACCCACCACACGTGGGTGCTTA
ATATGCACGTCTGGGATCGTCGTGGCAAGTTGTGCCGCATTGATCCTCCA
CTGTCAACAACATCAACATCAACCAACACCACCACCACCAACACAATCAT
CATCGACAACACCTGCTATGTCTGCAACATGTACACGACGACATGTACAC
GACGACATGTACACGACGACATGTACGACGTGTACAGTAACCGACTTGCC
GGCTAGACCGCCTCCACCGGCACCTCCGGCGGCGGAACCGTCCCCTTCCC
CGGCCGACGCAATGAAGGGGGTAAGTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTACTTCTGCGGCTGCTGTTGTTGGTCGCGCATTAAAGCAGTTTAT
TTGTTCGTCTTCGAGGGTAGGAGTGTTTCAGTGAATGCAAGATGTTTTTC
TAAGAGTCTGAACACAGGAATTCTACCCGAAACCCTCTAACAAACAGCAG
GCTGTATTTTGACCATTTGTTTTCCTCCTCGTGAGGTGTTTCAATTTCGA
GTATTGTGGAGATTGCAGGCTTTTTTCTTGTCCAAAATCCCCCCCGCCCC
CAACCAAATCGCGACTAGTGATACAGACAGTCCTTGAACCACCTTGGGCA
AAGTGGGAAGGGACGATCGGCCATCGGCGGTCGGTCCCGTGAGAACAATG
TTCCATCCTTTCGAGAGTACGCGTGGTCAACTGTCTAGATGTAACCGCTA
AGGCATGCAACGAAAAATGAGTACGCCGTCCCCGTCGCCTTTTTCTGGTT
CATCCTCGTGAAACGTAGCTAGGCCGGCGAAAAACTGGGCAGCATATCGC
TCCGTCCCGGCATTATAGGGATGCGAGGTCAATGGTCTAACTACTACGAT
ATGCGTGTACATGAAAATCGGTGGACATGCTGGGCTGGTGGGAAGGGAAG
ATTGACCATCAGTGGTCGGTGCTGTGAGAACAATTATCCTTACTCTCGAG
GACGCATGGTCTATGGTCTATCAGCTAAGTCATGCAAAACATAAGATCAC
CCATTCATCCACGCCTGTCCCGCAGGTCGTTGCGGCGGCGTCTGATTCCG
CCGCCGCAGCAGCAGAGGTGGAAAGCGTAACAACCGCTGAGGCTGAAAGT
GCGGCGGGACCCCCGCCGATTGAGGCTGCTCCCGCAGCCCCCCCTGCTGG
TGAGTTGTCACTTTGGCAGGCATTGTTGTGGTGGCTTGTTTTGCTACTGT
ATGGTATTTTTGTCGAAAACCCACATCAAGATACAGTTTTCGACAACACC
ATCCTTGAGTTCTACACAAGTGTGTGGTATGCAATCTGCTGGTGTGGAGG
TATGTGGCTTTCGTGTGTGCGTGGTTACCGAGGGCGCCGCAGCTTGCGAA
CCTGCGAGACGAGAAACGCCTTCCGGGGCTGAACATCTTGACCAAAGAAC
AGGTGCTGAATCAAGGAATCCTTGAACTAAAGTCATATGCATAGGCCCTC
TGGGCGTTTGGTTAAGATTTTTGTTATGATTGCGGTTGAGCGCCCCGGCA
CTTGTTTTCGATTTTTTTTTTTTGTAGCGTCCCGCGGGGCGTTTGTTTTG
ATGGAGGCATTTACTCCGTGCTGTTACGGGCACCCATCTCTCTGTCGTTT
TGGGGAGCAGTGTAACTGTCGACGGTTTGTATTTGTCGGTTTCGTAGACA
AAGGCGTTGATTGGTTGACGGCTCCTGGGCTGGGCACATCTCGTTGTGAT
TGCGGCGGACCTATGTTTCGAAATGTTGAAACTAGAAATTTGTCAGCGCC
ACATGTGCTAGTCAACGGCAAGTAACACTTTGCTCGGTACCTCCGCCCCC
CCTGTGGGTTGCTCTTGCCGCCGCTGTGACGCCAACATACTCTACGTGTC
CCACTTTGTCGAGCAGGTCGGTCAAGCGAGATCGCATTAGAGGGGGGGAA
GAGTTTGGAGCAATGTGTTCCTTACCGTTTTAATTCGGAAGTGTGGCGTT
GACAAGTTCCTTCAGCCAATGTGTGCTAAAACCCGCCCATATGTTATTCT
CATATCATATTTTCTTCCCCGATCAAATTCCCAGCAGTTTGTTCTTCTGT
AGCCGAACCGGCACCTAGACATCATTTCCTTCGACCTACTGTACGTAAAT
TGTACCTCCTGTCGTTACCTTATTTCTCGTGATACAGCAGTAACTCTCTC
CCCCAAACAACAAGTTTACCCCGCAGTCGCGAATCCTGCCACTAACCGGC
ACGTGCCTAAATATTTATTACTCCGACCTGTAAATGATTTGTGTGCATAC
CCCCGTGGATAACCTGTTTCCTGTGATCCCTCTGTTTCCCCCAAACAATT
ACCCCGCAGTTGCGGCCGAACCGGCACCTGCCACTCCCGAACCGGCACCT
GCCGCCGTCGCCGAACCTACTCCCTCGCCGTCCACTTCCTACTCCATCAA
GCCCGAGAAATCTAAGCGCAAGCCCATCCTCAGCCTCTTCAAGCGCGACA
CGGGGCCGCAGCGGTCCACGACCATGCAGGAAGCCCTCTCGGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig17485:74..3670+

>mRNA_Ecto-sp13_S_contig17485.5251.1 ID=mRNA_Ecto-sp13_S_contig17485.5251.1|Name=mRNA_Ecto-sp13_S_contig17485.5251.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig17485:74..3670+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTGGCTGTGGTGGTTGCCGGGGTGATCGGGTCTAGGTACCTGCT
GGTCCAGAAAGGCGGTGAACGTGGCCGGAGTGGAGGCCGGAGACGAGGGA
GAGGAGGGGGAGGGGGCGGTGCTTCCCCTAAGTCTCCGCTAGCGGGGATC
GGACAGCCCCGGGTTTCGCCGGAGGTGGCGGCGGCCGACCTGAAGAAGCG
AGCGGATAGCCTGAAGAGCGCCAACTTTGACGTGGACCTCGACCTCTTCG
GCGACGCCGTAACCGACTTGCCGGCTAGACCGCCTCCACCGGCACCTCCG
GCGGCGGAACCGTCCCCTTCCCCGGCCGACGCAATGAAGGGGGTCGTTGC
GGCGGCGTCTGATTCCGCCGCCGCAGCAGCAGAGGTGGAAAGCGTAACAA
CCGCTGAGGCTGAAAGTGCGGCGGGACCCCCGCCGATTGAGGCTGCTCCC
GCAGCCCCCCCTGCTGTTGCGGCCGAACCGGCACCTGCCACTCCCGAACC
GGCACCTGCCGCCGTCGCCGAACCTACTCCCTCGCCGTCCACTTCCTACT
CCATCAAGCCCGAGAAATCTAAGCGCAAGCCCATCCTCAGCCTCTTCAAG
CGCGACACGGGGCCGCAGCGGTCCACGACCATGCAGGAAGCCCTCTCGGA
CGAG
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